Rh5DG193200
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
N/A
Physical Location & Seq
Forward (+)
21513037 .. 21513372
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG193200.1

Sequence Viewer

Length: 336 bp
ATGCCTCCGGAGTACCTAGTCGGTTGCAATGTGGCTACCTTGAAAGGGGATGTGTTTAGTTTTGGCGTTCTGATGCTGGAAATCGCAACGGGGAGATGCCCAAGCCTACTCAACGAGCTTAATGGCAAGAAAAGGGGGTTAGTGGAATGGGCCAAGCGAATGATCACAAGTAATCGCCAAATGGAAATGGTGGATTCGAGGATTCTAAGGCAGGATTTGGATAAAGTTATAGTTGAGCAATATATGTCCATTGCTTGTTTGTGCACTTTTAATAATGATAAAGGGAGGCCCCCAATGAGAGAGGTCGTTGAGCTTCTAAATGAACTTTCAATGTGA

Protein Analysis

111

Amino Acids

12.61

Weight (kDa)

6.27

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 106 4.8e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 7
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 45
AgsI TTSAA 2 cut(s) 43, 330
AluBI AGCT 2 cut(s) 118, 313
AluI AGCT 2 cut(s) 118, 313
Alw21I GWGCWC 1 cut(s) 266
Alw44I GTGCAC 1 cut(s) 262
Aor13HI TCCGGA 1 cut(s) 7
AoxI GGCC 2 cut(s) 150, 287
ApaLI GTGCAC 1 cut(s) 262
AspS9I GGNCC 2 cut(s) 150, 288
BaeGI GKGCMC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 266
BclI TGATCA 1 cut(s) 162
BfaI CTAG 1 cut(s) 17
BmgT120I GGNCC 2 cut(s) 150, 288
BmiI GGNNCC 1 cut(s) 290
BmsI GCATC 2 cut(s) 63, 86
BsaWI WCCGGW 1 cut(s) 7
Bsc4I CCNNNNNNNGG 1 cut(s) 45
Bse3DI GCAATG 2 cut(s) 34, 249
BseAI TCCGGA 1 cut(s) 7
BseGI GGATG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 45
BseMI GCAATG 2 cut(s) 34, 249
BseSI GKGCMC 1 cut(s) 266
BshFI GGCC 2 cut(s) 152, 289
BsiHKAI GWGCWC 1 cut(s) 266
BsiSI CCGG 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 45
BsnI GGCC 2 cut(s) 152, 289
Bsp1286I GDGCHC 1 cut(s) 266
Bsp13I TCCGGA 1 cut(s) 7
Bsp143I GATC 1 cut(s) 162
BspANI GGCC 2 cut(s) 152, 289
BspEI TCCGGA 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 290
BsrDI GCAATG 2 cut(s) 34, 249
BssMI GATC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 55
BstKTI GATC 1 cut(s) 165
BstMBI GATC 1 cut(s) 162
BstSLI GKGCMC 1 cut(s) 266
BsuRI GGCC 2 cut(s) 152, 289
BtsCI GGATG 1 cut(s) 55
Cfr13I GGNCC 2 cut(s) 150, 288
Csp6I GTAC 1 cut(s) 13
CviJI RGCY 6 cut(s) 35, 105, 118, 152, 289, 313
CviKI_1 RGCY 6 cut(s) 35, 105, 118, 152, 289, 313
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 1 cut(s) 206
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
EcoO109I RGGNCCY 1 cut(s) 288
FaiI YATR 3 cut(s) 230, 243, 245
FbaI TGATCA 1 cut(s) 162
FokI GGATG 1 cut(s) 62
FspBI CTAG 1 cut(s) 17
HaeIII GGCC 2 cut(s) 152, 289
HapII CCGG 1 cut(s) 8
HinfI GANTC 2 cut(s) 194, 202
HpaII CCGG 1 cut(s) 8
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 1 cut(s) 264
HpyCH4V TGCA 2 cut(s) 27, 264
HpyF3I CTNAG 1 cut(s) 206
Kpn2I TCCGGA 1 cut(s) 7
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 1 cut(s) 162
LpnPI CCDG 3 cut(s) 21, 62, 197
LweI GCATC 2 cut(s) 63, 86
MaeI CTAG 1 cut(s) 17
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MhlI GDGCHC 1 cut(s) 266
MnlI CCTC 4 cut(s) 15, 192, 279, 295
MroI TCCGGA 1 cut(s) 7
MseI TTAA 2 cut(s) 120, 270
MspI CCGG 1 cut(s) 8
NdeII GATC 1 cut(s) 162
NlaIV GGNNCC 1 cut(s) 290
PfeI GAWTC 2 cut(s) 194, 202
PspN4I GGNNCC 1 cut(s) 290
PspPI GGNCC 2 cut(s) 150, 288
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SaqAI TTAA 2 cut(s) 120, 270
Sau3AI GATC 1 cut(s) 162
Sau96I GGNCC 2 cut(s) 150, 288
SduI GDGCHC 1 cut(s) 266
SetI ASST 5 cut(s) 18, 41, 120, 306, 315
SfaNI GCATC 2 cut(s) 63, 86
SspMI CTAG 1 cut(s) 17
TaqI TCGA 1 cut(s) 197
TfiI GAWTC 2 cut(s) 194, 202
Tru1I TTAA 2 cut(s) 120, 270
Tru9I TTAA 2 cut(s) 120, 270
TspDTI ATGAA 1 cut(s) 336
VneI GTGCAC 1 cut(s) 262
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.