Rh5DG198200

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
N/A
Physical Location & Seq
Reverse (-)
22083588 .. 22084292
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG198200.1

Sequence Viewer

Length: 705 bp
ATGTGTACTATTTCTGAATTTTCGAGGCTTGGTAATTTATCTCGTGTTCATGGCTGGATCCGCACTGCAATTAAGTGTATTGTTGTTGAACTTGATCTTTCTCTCTATTGTGAGACCTGTGAGGACAAACCACGAAGGAAAAAAAAATCGAGTTCCCGCAAAGCCTTTTCATGTGCAAGACGTACACTGCAGGTTTTGAAGGTGTGGTCAAATTGTGTTGCTTATAATCCTCCTACATTGGGTTGTTTTCCATCACTCAAGTTCCTCCAGGCTACACTTAAATATCCTAATGATGTCTCCAAGCTCTTTCCTCACCTTCCTGTGCTCGAGAATTTGACTATAGATGGAACACTTTTAATTGAACGAGTTTTGATATTAAACATTTCTGCGCCTAAACTGAGGAACTTAAGCATAAGTTTGCAAGTTGAAAATCATAGTGGAGATGGGCACAATTTTTATATTGATGCTCCCAAGCTTGAAAACCTTGATCTGGAGCTAGATGGCTATTCAAACTATTTTATTGAGAGTGCAAAGTCCCCAGTCCAACCCAATTTTACTGTTTACAGCTCGTCAGGAATTGATGCCAACTGCGTAACTGTGCCACTAGCACTGATATCACATGTCAAATATCTGTCTCTGGATATTGATGTTGAGTATCTGGAGGTGATTCTAGCCTTTCTTGTTCCTCAACTATATATTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

234

Amino Acids

26.33

Weight (kDa)

7.55

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 225
Acc36I ACCTGC 1 cut(s) 181
AciI CCGC 2 cut(s) 61, 157
AclWI GGATC 2 cut(s) 52, 65
AcsI RAATTY 2 cut(s) 17, 331
AfaI GTAC 2 cut(s) 7, 184
AfiI CCNNNNNNNGG 2 cut(s) 239, 490
AflII CTTAAG 1 cut(s) 406
AflIII ACRYGT 1 cut(s) 619
AgsI TTSAA 6 cut(s) 89, 199, 362, 428, 479, 510
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 4 cut(s) 304, 475, 496, 567
AluI AGCT 4 cut(s) 304, 475, 496, 567
Alw21I GWGCWC 1 cut(s) 327
Alw26I GTCTC 3 cut(s) 107, 301, 639
AlwI GGATC 2 cut(s) 52, 65
Ama87I CYCGRG 1 cut(s) 326
ApoI RAATTY 2 cut(s) 17, 331
AspLEI GCGC 1 cut(s) 391
AsuHPI GGTGA 2 cut(s) 305, 676
AvaI CYCGRG 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 450
BamHI GGATCC 1 cut(s) 57
BauI CACGAG 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 327
BccI CCATC 4 cut(s) 259, 338, 437, 494
BciT130I CCWGG 1 cut(s) 269
BcoDI GTCTC 3 cut(s) 107, 301, 639
BfaI CTAG 3 cut(s) 497, 605, 671
BfmI CTRYAG 2 cut(s) 188, 339
BfrI CTTAAG 1 cut(s) 406
BfuAI ACCTGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 326
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 269
BmrI ACTGGG 1 cut(s) 533
BmsI GCATC 2 cut(s) 454, 571
BmuI ACTGGG 1 cut(s) 533
BpmI CTGGAG 3 cut(s) 251, 512, 680
BpuEI CTTGAG 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 490
Bse1I ACTGG 1 cut(s) 539
BseBI CCWGG 1 cut(s) 269
BseLI CCNNNNNNNGG 2 cut(s) 239, 490
BseMII CTCAG 1 cut(s) 389
BseNI ACTGG 1 cut(s) 539
BseSI GKGCMC 1 cut(s) 450
BsiHKAI GWGCWC 1 cut(s) 327
BsiHKCI CYCGRG 1 cut(s) 326
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 2 cut(s) 239, 490
BsmAI GTCTC 3 cut(s) 107, 301, 639
BsmFI GGGAC 1 cut(s) 520
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 2 cut(s) 327, 450
Bsp143I GATC 3 cut(s) 57, 94, 487
BspACI CCGC 2 cut(s) 61, 157
BspCNI CTCAG 1 cut(s) 390
BspLI GGNNCC 1 cut(s) 59
BspMAI CTGCAG 1 cut(s) 192
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 2 cut(s) 52, 65
BspTI CTTAAG 1 cut(s) 406
BspTNI GGTCTC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 539
BssMI GATC 3 cut(s) 57, 94, 487
BssSI CACGAG 1 cut(s) 42
Bst2BI CACGAG 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 2 cut(s) 559, 598
BstAFI CTTAAG 1 cut(s) 406
BstDEI CTNAG 1 cut(s) 398
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 3 cut(s) 60, 97, 490
BstMAI GTCTC 3 cut(s) 107, 301, 639
BstMBI GATC 3 cut(s) 57, 94, 487
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstNI CCWGG 1 cut(s) 269
BstNSI RCATGY 1 cut(s) 623
BstSCI CCNGG 1 cut(s) 267
BstSFI CTRYAG 2 cut(s) 188, 339
BstSLI GKGCMC 1 cut(s) 450
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
BtsI GCAGTG 2 cut(s) 63, 185
BtsIMutI CAGTG 3 cut(s) 63, 185, 608
BveI ACCTGC 1 cut(s) 181
CfoI GCGC 1 cut(s) 391
Csp6I GTAC 2 cut(s) 6, 183
CviAII CATG 3 cut(s) 50, 171, 620
CviQI GTAC 2 cut(s) 6, 183
DdeI CTNAG 1 cut(s) 398
DpnI GATC 3 cut(s) 59, 96, 489
DpnII GATC 3 cut(s) 57, 94, 487
Eco31I GGTCTC 1 cut(s) 107
Eco32I GATATC 1 cut(s) 615
Eco88I CYCGRG 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 267
EcoRV GATATC 1 cut(s) 615
FaeI CATG 3 cut(s) 53, 174, 623
FaqI GGGAC 1 cut(s) 520
FatI CATG 3 cut(s) 49, 170, 619
FauI CCCGC 1 cut(s) 164
FspBI CTAG 3 cut(s) 497, 605, 671
GlaI GCGC 1 cut(s) 390
GsuI CTGGAG 3 cut(s) 251, 512, 680
HhaI GCGC 1 cut(s) 391
Hin1II CATG 3 cut(s) 53, 174, 623
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HindIII AAGCTT 1 cut(s) 473
HinfI GANTC 1 cut(s) 667
HphI GGTGA 2 cut(s) 305, 676
Hpy166II GTNNAC 3 cut(s) 6, 185, 562
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 5 cut(s) 328, 491, 573, 638, 659
Hpy8I GTNNAC 3 cut(s) 6, 185, 562
HpyAV CCTTC 3 cut(s) 129, 193, 326
HpyCH4III ACNGT 2 cut(s) 559, 598
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 5 cut(s) 68, 176, 190, 421, 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpyF3I CTNAG 1 cut(s) 398
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 3 cut(s) 53, 174, 623
HspAI GCGC 1 cut(s) 389
Kzo9I GATC 3 cut(s) 57, 94, 487
LmnI GCTCC 2 cut(s) 472, 493
LweI GCATC 2 cut(s) 454, 571
MaeI CTAG 3 cut(s) 497, 605, 671
MaeII ACGT 1 cut(s) 181
MaeIII GTNAC 1 cut(s) 592
MalI GATC 3 cut(s) 59, 96, 489
MboI GATC 3 cut(s) 57, 94, 487
MflI RGATCY 1 cut(s) 57
MhlI GDGCHC 2 cut(s) 327, 450
MluCI AATT 9 cut(s) 17, 34, 69, 211, 331, 357, 451, 550, 576
MmeI TCCRAC 1 cut(s) 568
MnlI CCTC 8 cut(s) 18, 115, 240, 275, 321, 393, 655, 696
MseI TTAA 6 cut(s) 72, 279, 356, 377, 407, 703
MspCI CTTAAG 1 cut(s) 406
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 60
NdeII GATC 3 cut(s) 57, 94, 487
NlaIII CATG 3 cut(s) 53, 174, 623
NlaIV GGNNCC 1 cut(s) 59
NspI RCATGY 1 cut(s) 623
PaeR7I CTCGAG 1 cut(s) 326
PciI ACATGT 1 cut(s) 619
PfeI GAWTC 1 cut(s) 667
PscI ACATGT 1 cut(s) 619
PsiI TTATAA 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 59
PstI CTGCAG 1 cut(s) 192
PsuI RGATCY 1 cut(s) 57
RsaI GTAC 2 cut(s) 7, 184
RsaNI GTAC 2 cut(s) 6, 183
SaqAI TTAA 6 cut(s) 72, 279, 356, 377, 407, 703
Sau3AI GATC 3 cut(s) 57, 94, 487
ScrFI CCNGG 1 cut(s) 269
SduI GDGCHC 2 cut(s) 327, 450
SfaNI GCATC 2 cut(s) 454, 571
SfcI CTRYAG 2 cut(s) 188, 339
Sfr274I CTCGAG 1 cut(s) 326
SlaI CTCGAG 1 cut(s) 326
SmlI CTYRAG 3 cut(s) 257, 326, 406
SmoI CTYRAG 3 cut(s) 257, 326, 406
Sse9I AATT 9 cut(s) 17, 34, 69, 211, 331, 357, 451, 550, 576
SsiI CCGC 2 cut(s) 61, 157
SspMI CTAG 3 cut(s) 497, 605, 671
StyD4I CCNGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 559, 598
TaiI ACGT 1 cut(s) 184
TaqI TCGA 3 cut(s) 23, 149, 327
TasI AATT 9 cut(s) 17, 34, 69, 211, 331, 357, 451, 550, 576
TatI WGTACW 1 cut(s) 5
TfiI GAWTC 1 cut(s) 667
Tru1I TTAA 6 cut(s) 72, 279, 356, 377, 407, 703
Tru9I TTAA 6 cut(s) 72, 279, 356, 377, 407, 703
TscAI CASTG 3 cut(s) 70, 192, 615
TspDTI ATGAA 2 cut(s) 38, 159
TspRI CASTG 3 cut(s) 70, 192, 615
Vha464I CTTAAG 1 cut(s) 406
XapI RAATTY 2 cut(s) 17, 331
XceI RCATGY 1 cut(s) 623
XhoI CTCGAG 1 cut(s) 326
XspI CTAG 3 cut(s) 497, 605, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.