Rh5DG202200

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
N/A
Physical Location & Seq
Forward (+)
22381924 .. 22382226
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG202200.1

Sequence Viewer

Length: 303 bp
ATGTGGAAGAACATATGGGCTACTGTTCCCAATCTAGTATTTTACCATCTACCTCACTCCATAACTGCTCATTTCGTGGCCTTTGTCAATCGCATACTTTTCTTTCGTGACTCATCATCTGCCATTCAAATGTTCCATCTTCATTTCACTTCTTGCCATGCAGAGGATTTCATTCACATTGATAGATGGATTCGCGCTGCAATTATGTGTCATGTTGTTGAGATGTATCTTTATGTAGACTCGTATGATTGCGAGCTGCTTGAGTTGAGTTGCCTGAAAGCCTTTTCACATGCAAAACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.89

Weight (kDa)

6.53

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 237
AccII CGCG 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 1 cut(s) 128
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 2 cut(s) 197, 256
AspLEI GCGC 1 cut(s) 197
BbvI GCAGC 2 cut(s) 184, 243
BccI CCATC 3 cut(s) 54, 144, 180
BfaI CTAG 1 cut(s) 35
BisI GCNGC 2 cut(s) 198, 257
BlsI GCNGC 2 cut(s) 199, 258
BpuEI CTTGAG 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 163
BseXI GCAGC 2 cut(s) 184, 243
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 163
BsnI GGCC 1 cut(s) 80
BspANI GGCC 1 cut(s) 80
BspFNI CGCG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 254
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 293
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 184, 243
BsuRI GGCC 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 254
CfoI GCGC 1 cut(s) 197
CviAII CATG 3 cut(s) 158, 212, 290
CviJI RGCY 4 cut(s) 20, 80, 256, 281
CviKI_1 RGCY 4 cut(s) 20, 80, 256, 281
FaeI CATG 3 cut(s) 161, 215, 293
FatI CATG 3 cut(s) 157, 211, 289
FauNDI CATATG 1 cut(s) 14
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 198, 257
Fsp4HI GCNGC 2 cut(s) 198, 257
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 196
GluI GCNGC 2 cut(s) 198, 257
HaeIII GGCC 1 cut(s) 80
HhaI GCGC 1 cut(s) 197
Hin1II CATG 3 cut(s) 161, 215, 293
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HinfI GANTC 3 cut(s) 110, 190, 239
Hpy166II GTNNAC 1 cut(s) 238
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 3 cut(s) 161, 200, 293
Hsp92II CATG 3 cut(s) 161, 215, 293
HspAI GCGC 1 cut(s) 195
LpnPI CCDG 1 cut(s) 287
Lsp1109I GCAGC 2 cut(s) 184, 243
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 107
MboII GAAGA 2 cut(s) 19, 131
MluCI AATT 1 cut(s) 201
MlyI GAGTC 2 cut(s) 104, 233
MnlI CCTC 2 cut(s) 63, 157
MslI CAYNNNNRTG 1 cut(s) 128
MvnI CGCG 1 cut(s) 195
NdeI CATATG 1 cut(s) 14
NlaIII CATG 3 cut(s) 161, 215, 293
NmuCI GTSAC 1 cut(s) 107
NspI RCATGY 1 cut(s) 293
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 2 cut(s) 199, 258
PleI GAGTC 2 cut(s) 104, 233
PpsI GAGTC 2 cut(s) 104, 233
RseI CAYNNNNRTG 1 cut(s) 128
SatI GCNGC 2 cut(s) 198, 257
SchI GAGTC 2 cut(s) 104, 233
SetI ASST 2 cut(s) 55, 258
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 1 cut(s) 201
SspMI CTAG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 25
TasI AATT 1 cut(s) 201
TfiI GAWTC 1 cut(s) 190
TseFI GTSAC 1 cut(s) 107
TseI GCWGC 2 cut(s) 197, 256
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 131, 160
XceI RCATGY 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.