Rh5DG202600

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
N/A
Physical Location & Seq
Forward (+)
22396431 .. 22396883
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG202600.1

Sequence Viewer

Length: 297 bp
ATGCATGATCTGTACAATTTTTTTATTGATGCCCCGAAGCTGGAAAAACTTGATCTCCAAGAGGGTTCTCTACCGAATTTTAATTTTAACAACACAAAATCATTAGTCGAAGCCAATCTCTATTTATATCCCAATGAAGATTATGTAGAAGAGGACTCTGTTAAACGTGCAACTGAGTTTCTGGCACAAATTTCAACTGATTTCATGGAGCATTTATCAGCTATAGATGGATCTCTAGAAGTCAATGGCTTTGATTTCACCATCTCTGAGCCTGATTTGAAGAAATTAAGCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

98

Amino Acids

11.26

Weight (kDa)

4.23

Isoelectric Point (pI)

32.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 238
AcsI RAATTY 2 cut(s) 76, 189
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 2 cut(s) 195, 280
AluBI AGCT 2 cut(s) 40, 221
AluI AGCT 2 cut(s) 40, 221
AlwI GGATC 1 cut(s) 238
ApoI RAATTY 2 cut(s) 76, 189
AsuHPI GGTGA 1 cut(s) 250
BccI CCATC 2 cut(s) 221, 269
BfaI CTAG 1 cut(s) 236
BfmI CTRYAG 1 cut(s) 222
BmsI GCATC 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMII CTCAG 2 cut(s) 165, 258
BslI CCNNNNNNNGG 1 cut(s) 40
Bsp1407I TGTACA 1 cut(s) 12
Bsp143I GATC 3 cut(s) 7, 52, 230
BspCNI CTCAG 2 cut(s) 166, 259
BspPI GGATC 1 cut(s) 238
BsrGI TGTACA 1 cut(s) 12
BssMI GATC 3 cut(s) 7, 52, 230
Bst6I CTCTTC 1 cut(s) 144
BstAUI TGTACA 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 174, 267
BstKTI GATC 3 cut(s) 10, 55, 233
BstMBI GATC 3 cut(s) 7, 52, 230
BstSFI CTRYAG 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
Csp6I GTAC 1 cut(s) 13
CviAII CATG 2 cut(s) 5, 205
CviJI RGCY 5 cut(s) 40, 113, 221, 249, 271
CviKI_1 RGCY 5 cut(s) 40, 113, 221, 249, 271
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 2 cut(s) 174, 267
DpnI GATC 3 cut(s) 9, 54, 232
DpnII GATC 3 cut(s) 7, 52, 230
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 8, 208
FaiI YATR 5 cut(s) 6, 127, 144, 206, 224
FatI CATG 2 cut(s) 4, 204
FspBI CTAG 1 cut(s) 236
Hin1II CATG 2 cut(s) 8, 208
HinfI GANTC 1 cut(s) 155
HphI GGTGA 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 4, 170
HpyF3I CTNAG 2 cut(s) 174, 267
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 2 cut(s) 8, 208
Kzo9I GATC 3 cut(s) 7, 52, 230
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 3 cut(s) 26, 167, 285
LweI GCATC 1 cut(s) 19
MaeI CTAG 1 cut(s) 236
MaeII ACGT 1 cut(s) 166
MalI GATC 3 cut(s) 9, 54, 232
MboI GATC 3 cut(s) 7, 52, 230
MboII GAAGA 3 cut(s) 149, 161, 292
MflI RGATCY 1 cut(s) 230
MluCI AATT 5 cut(s) 16, 76, 82, 189, 284
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 2 cut(s) 55, 145
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 5 cut(s) 81, 87, 162, 287, 295
NdeII GATC 3 cut(s) 7, 52, 230
NlaIII CATG 2 cut(s) 8, 208
NsiI ATGCAT 1 cut(s) 6
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PsuI RGATCY 1 cut(s) 230
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SaqAI TTAA 5 cut(s) 81, 87, 162, 287, 295
Sau3AI GATC 3 cut(s) 7, 52, 230
SchI GAGTC 1 cut(s) 149
SetI ASST 3 cut(s) 42, 169, 223
SfaNI GCATC 1 cut(s) 19
SfcI CTRYAG 1 cut(s) 222
Sse9I AATT 5 cut(s) 16, 76, 82, 189, 284
SspMI CTAG 1 cut(s) 236
TaiI ACGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 108
TasI AATT 5 cut(s) 16, 76, 82, 189, 284
TatI WGTACW 1 cut(s) 12
Tru1I TTAA 5 cut(s) 81, 87, 162, 287, 295
Tru9I TTAA 5 cut(s) 81, 87, 162, 287, 295
TspDTI ATGAA 2 cut(s) 150, 193
XapI RAATTY 2 cut(s) 76, 189
XbaI TCTAGA 1 cut(s) 235
XspI CTAG 1 cut(s) 236
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.