Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

43370595 .. 43375340

Gene Structure 4746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG329600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGATTCGACTTGCCATTCCACATTGAGGCATGAATTCCGACTGTGCCGGGTGTACATAGTATCGGGGAGTTCTCGAGCATTCGATAGGCGCCCGCCGGAAGGAAGCGGATATGCATCACATCGACGAAGTAATTTAACGGGGGCAAGTGCTTCTTCATCTCACCAGGCAGCAATGGTAGCAGAGAAAACAAGCTCATCATCTGATACTCGTTCAAATTCAGGAGACCAAGCTGATTTCCAAGCAGAGAATAATGATTTGGAAATGGATGATGATCTTCAACCTCTATGGGAATGGGAGCAGCTAAACTTACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

105

Amino Acids

11.71

Weight (kDa)

5.02

Isoelectric Point (pI)

59.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	90
AciI	CCGC	2 cut(s)	95, 108
AcsI	RAATTY	2 cut(s)	35, 217
AcyI	GRCGYC	1 cut(s)	91
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	27, 101
AgsI	TTSAA	2 cut(s)	216, 281
AjnI	CCWGG	1 cut(s)	165
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	3 cut(s)	195, 233, 304
AluI	AGCT	3 cut(s)	195, 233, 304
Alw26I	GTCTC	1 cut(s)	219
Ama87I	CYCGRG	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	170, 301
ApoI	RAATTY	2 cut(s)	35, 217
AspLEI	GCGC	1 cut(s)	93
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	75
BanI	GGYRCC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	182, 313
BciT130I	CCWGG	1 cut(s)	167
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	94
BisI	GCNGC	2 cut(s)	171, 302
BlsI	GCNGC	2 cut(s)	172, 303
Bme1390I	CCNGG	2 cut(s)	50, 167
BmeT110I	CYCGRG	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	2 cut(s)	50, 167
BmsI	GCATC	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	50
BsaBI	GATNNNNATC	2 cut(s)	115, 273
BsaHI	GRCGYC	1 cut(s)	91
BsaI	GGTCTC	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 101
Bse3DI	GCAATG	1 cut(s)	180
Bse8I	GATNNNNATC	2 cut(s)	115, 273
BseBI	CCWGG	1 cut(s)	167
BseGI	GGATG	1 cut(s)	274
BseJI	GATNNNNATC	2 cut(s)	115, 273
BseLI	CCNNNNNNNGG	2 cut(s)	27, 101
BseMI	GCAATG	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	182, 313
BshNI	GGYRCC	1 cut(s)	90
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	49, 98
BslI	CCNNNNNNNGG	2 cut(s)	27, 101
BsmAI	GTCTC	1 cut(s)	219
BsmI	GAATGC	1 cut(s)	80
Bso31I	GGTCTC	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	75
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	2 cut(s)	95, 108
BspLI	GGNNCC	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	90
BspTNI	GGTCTC	1 cut(s)	219
BsrDI	GCAATG	1 cut(s)	180
BsrGI	TGTACA	1 cut(s)	54
BssMI	GATC	1 cut(s)	274
BssNI	GRCGYC	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	91
BstAUI	TGTACA	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	274
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	48, 165
BstV1I	GCAGC	2 cut(s)	182, 313
BtsCI	GGATG	1 cut(s)	274
Cac8I	GCNNGC	1 cut(s)	95
CfoI	GCGC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	3 cut(s)	195, 233, 304
CviKI_1	RGCY	3 cut(s)	195, 233, 304
CviQI	GTAC	1 cut(s)	55
DinI	GGCGCC	1 cut(s)	92
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
Eco31I	GGTCTC	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	75
EcoRI	GAATTC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	118
EgeI	GGCGCC	1 cut(s)	92
EheI	GGCGCC	1 cut(s)	92
FaeI	CATG	1 cut(s)	35
FaiI	YATR	4 cut(s)	33, 59, 114, 289
FalI	AAGNNNNNCTT	2 cut(s)	139, 171
FatI	CATG	1 cut(s)	31
FauI	CCCGC	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	171, 302
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	2 cut(s)	171, 302
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	2 cut(s)	171, 302
HaeII	RGCGCY	1 cut(s)	94
HapII	CCGG	2 cut(s)	49, 98
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	91
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	49, 98
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	41, 205
Hpy188III	TCNNGA	2 cut(s)	75, 222
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	129
HpyAV	CCTTC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
Hsp92I	GRCGYC	1 cut(s)	91
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	1 cut(s)	91
KasI	GGCGCC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	5 cut(s)	62, 111, 152, 179, 207
Lsp1109I	GCAGC	2 cut(s)	182, 313
LweI	GCATC	1 cut(s)	125
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	2 cut(s)	147, 269
MluCI	AATT	3 cut(s)	35, 133, 217
Mly113I	GGCGCC	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	2 cut(s)	21, 294
Mph1103I	ATGCAT	1 cut(s)	118
MseI	TTAA	1 cut(s)	137
MspI	CCGG	2 cut(s)	49, 98
MspR9I	CCNGG	2 cut(s)	50, 167
Mva1269I	GAATGC	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	179
NarI	GGCGCC	1 cut(s)	91
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	118
PaeR7I	CTCGAG	1 cut(s)	75
PctI	GAATGC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	172, 303
PluTI	GGCGCC	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	92
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	2 cut(s)	171, 302
Sau3AI	GATC	1 cut(s)	274
ScrFI	CCNGG	2 cut(s)	50, 167
SetI	ASST	4 cut(s)	197, 235, 286, 306
SfaNI	GCATC	1 cut(s)	125
SfoI	GGCGCC	1 cut(s)	92
Sfr274I	CTCGAG	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	3 cut(s)	35, 133, 217
SsiI	CCGC	2 cut(s)	95, 108
SspDI	GGCGCC	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	48, 165
TaaI	ACNGT	1 cut(s)	45
TaqI	TCGA	4 cut(s)	8, 76, 84, 124
TasI	AATT	3 cut(s)	35, 133, 217
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TseI	GCWGC	2 cut(s)	170, 301
TspDTI	ATGAA	2 cut(s)	48, 147
XapI	RAATTY	2 cut(s)	35, 217
XhoI	CTCGAG	1 cut(s)	75
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.