Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

64160975 .. 64168803

Gene Structure 7829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG405700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGCAAGCCGGCATTGATAAGCTTGCTGATGCTGTTGGCCTTACTCTTGGTCCCAGAGGGAGGAATGTTGTGTTGGATGAGTACGGTAGCCCTAAAGTGGTGAATGATGGAGTAACAATTGCTAGAGCTATTGAGCTACCTGATGCTATGGAAAATGCTGGCGCAGCTCTCATTAGGGAGGTTGCTAGTAAGACCAATGATTCTGCTGGTGACGGCACAACAACAGCATCCATTCTTGCACGCGAGATAATCAAGCTTGGGCTTTTGAGTGTCACCTCTGGTGCAAATCCCGTTTCAATTAAGAAGGGGATTGATAAAACTGTACAGGCATTGGTGGACGAACTAGAGAACAAGTCTAGGCCTGTTAAGGGTCGTGATGATGTTAAAGCTGTTGCATCTATTTCTGCTGGGAATGATGAGCAAATTGGAACAATGATTGCTGATGCTATCGACAAGGTTGGACCTGATGGTGTTTTGTCCATTGAGTCTTCATCCTCATTTGAGACGACCGTCGAAGTGGAAGAAGGAATGGAGATTGACAGAGGATATATCTCCCCTCAATTTGTTACAAACCCGGAGAAATTGATTGTTGAGTTTGAGAATGCAAGAGTCTTGATTACAGACCAGAAGATTTCAGCTATCAAGGACATAATTCCCCTGTTAGAAAAGACCACTCAGTTGAGAAGCCCTCTGCTTATTATTGCTGAGGATGTCTCTGGGGAGGCTTTGGCGACTCTTGTTGTCAACAAGTTGAGGGGTATACTGAATGTTGCTGCCATCAAAGCCCCAGGTTTTGGTGAGCGCAGAAAGGCTCTCCTCCAAGATATTGCCATTTTGACTGGTGCCGAGTTTCAAGCCAATGATCTTGGTCTACTGATTGAGAACACCACAGTTGAGCAGCTTGGTTTGGCCAGAAAGGTGACAATCTCGAAGGACTCCACTACCATCATTGCTGATCAAGCTTCAAAGGATGAGTTGCAATCTAGAATTGCACAATTGAAAAAGGAGTTGTCTGAAACAGATTCTGTATATGACACTGAGAAATTGGCTGAGAGGATTGCCAAACTATCTGGGGGAGTTGCTGTTATAAAGGTTGGTGCTGCTACTGAAACCGAACTTGAGGACCGTAAGCTCCGTATTGAGGATGCCAAGAATGCCACTTTTGCTGCCATAGAGGAAGGGATTGTTCCTGGTGGCGGTGCTGCATTGGTACATCTTTCAACATATGTCCCTGCAATCAAGGACAGACTTGAAGATGCAGATGAGAAGCTAGGCGCTGACATTGTGCAGAAGGTAACTACCACACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005840 GO:0006457 GO:0006458 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0022414 GO:0022626 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051082 GO:0061077 GO:0061458 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

436

Amino Acids

46.18

Weight (kDa)

4.74

Isoelectric Point (pI)

28.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	8 - 429	2.1e-55	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1088
AccB1I	GGYRCC	1 cut(s)	842
AccB7I	CCANNNNNTGG	1 cut(s)	794
AccI	GTMKAC	2 cut(s)	760, 871
AccII	CGCG	1 cut(s)	243
AciI	CCGC	1 cut(s)	1197
AcoI	YGGCCR	1 cut(s)	909
AfaI	GTAC	3 cut(s)	83, 324, 1212
AfiI	CCNNNNNNNGG	6 cut(s)	60, 97, 368, 794, 1141, 1196
AgsI	TTSAA	6 cut(s)	297, 854, 966, 1000, 1221, 1253
AjnI	CCWGG	2 cut(s)	787, 1189
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
Alw26I	GTCTC	2 cut(s)	497, 718
AlwNI	CAGNNNCTG	1 cut(s)	1025
AoxI	GGCC	3 cut(s)	37, 359, 909
ApeKI	GCWGC	6 cut(s)	164, 773, 898, 1100, 1166, 1202
AspLEI	GCGC	3 cut(s)	164, 804, 1277
AspS9I	GGNCC	3 cut(s)	50, 461, 1123
AsuC2I	CCSGG	1 cut(s)	575
AsuHPI	GGTGA	5 cut(s)	112, 221, 265, 809, 931
AvaII	GGWCC	3 cut(s)	50, 461, 1123
BalI	TGGCCA	1 cut(s)	911
BanI	GGYRCC	1 cut(s)	842
BbsI	GAAGAC	1 cut(s)	480
BbvCI	CCTCAGC	1 cut(s)	705
BbvI	GCAGC	6 cut(s)	176, 760, 910, 1087, 1153, 1189
BccI	CCATC	4 cut(s)	101, 461, 785, 953
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	2 cut(s)	789, 1191
BclI	TGATCA	1 cut(s)	955
BcnI	CCSGG	1 cut(s)	575
BcoDI	GTCTC	2 cut(s)	497, 718
BfaI	CTAG	6 cut(s)	123, 186, 344, 357, 984, 1271
BfoI	RGCGCY	1 cut(s)	1278
BisI	GCNGC	6 cut(s)	165, 774, 899, 1101, 1167, 1203
BlsI	GCNGC	6 cut(s)	166, 775, 900, 1102, 1168, 1204
Bme1390I	CCNGG	3 cut(s)	575, 789, 1191
Bme18I	GGWCC	3 cut(s)	50, 461, 1123
BmgT120I	GGNCC	3 cut(s)	50, 461, 1123
BmiI	GGNNCC	2 cut(s)	52, 844
BmrFI	CCNGG	3 cut(s)	575, 789, 1191
BmsI	GCATC	7 cut(s)	19, 133, 236, 404, 433, 1135, 1246
BoxI	GACNNNNGTC	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	480
BplI	GAGNNNNNCTC	4 cut(s)	673, 705, 698, 730
Bpu10I	CCTNAGC	1 cut(s)	705
BpuEI	CTTGAG	1 cut(s)	1139
BpuMI	CCSGG	1 cut(s)	575
BsaJI	CCNNGG	1 cut(s)	787
BsaXI	ACNNNNNCTCC	2 cut(s)	1068, 1098
Bsc4I	CCNNNNNNNGG	6 cut(s)	60, 97, 368, 794, 1141, 1196
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	844
Bse3DI	GCAATG	1 cut(s)	948
BseBI	CCWGG	2 cut(s)	789, 1191
BseDI	CCNNGG	1 cut(s)	787
BseGI	GGATG	6 cut(s)	82, 227, 491, 715, 976, 1150
BseLI	CCNNNNNNNGG	6 cut(s)	60, 97, 368, 794, 1141, 1196
BseMI	GCAATG	1 cut(s)	948
BseMII	CTCAG	4 cut(s)	689, 696, 1029, 1041
BseNI	ACTGG	1 cut(s)	844
BseRI	GAGGAG	1 cut(s)	806
BseXI	GCAGC	6 cut(s)	176, 760, 910, 1087, 1153, 1189
BseYI	CCCAGC	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	1307
Bsh1236I	CGCG	1 cut(s)	243
Bsh1285I	CGRYCG	1 cut(s)	510
BshFI	GGCC	3 cut(s)	39, 361, 911
BshNI	GGYRCC	1 cut(s)	842
BsiEI	CGRYCG	1 cut(s)	510
BsiSI	CCGG	2 cut(s)	9, 575
BslFI	GGGAC	2 cut(s)	36, 1214
BslI	CCNNNNNNNGG	6 cut(s)	60, 97, 368, 794, 1141, 1196
BsmAI	GTCTC	2 cut(s)	497, 718
BsmBI	CGTCTC	1 cut(s)	497
BsmFI	GGGAC	2 cut(s)	36, 1214
BsmI	GAATGC	2 cut(s)	607, 1159
BsnI	GGCC	3 cut(s)	39, 361, 911
Bsp1407I	TGTACA	1 cut(s)	322
Bsp143I	GATC	2 cut(s)	862, 955
BspACI	CCGC	1 cut(s)	1197
BspANI	GGCC	3 cut(s)	39, 361, 911
BspCNI	CTCAG	4 cut(s)	688, 697, 1030, 1042
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	52, 844
BspT107I	GGYRCC	1 cut(s)	842
BsrDI	GCAATG	1 cut(s)	948
BsrFI	RCCGGY	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	844
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	787
BssMI	GATC	2 cut(s)	862, 955
BssNAI	GTATAC	1 cut(s)	761
Bst1107I	GTATAC	1 cut(s)	761
Bst2UI	CCWGG	2 cut(s)	789, 1191
Bst4CI	ACNGT	5 cut(s)	86, 322, 511, 892, 1127
BstAUI	TGTACA	1 cut(s)	322
BstC8I	GCNNGC	5 cut(s)	6, 10, 24, 160, 241
BstDEI	CTNAG	5 cut(s)	675, 705, 1038, 1050, 1308
BstF5I	GGATG	6 cut(s)	82, 227, 491, 715, 976, 1150
BstFNI	CGCG	1 cut(s)	243
BstH2I	RGCGCY	1 cut(s)	1278
BstHHI	GCGC	3 cut(s)	164, 804, 1277
BstKTI	GATC	2 cut(s)	865, 958
BstMAI	GTCTC	2 cut(s)	497, 718
BstMBI	GATC	2 cut(s)	862, 955
BstMCI	CGRYCG	1 cut(s)	510
BstMWI	GCNNNNNNNGC	5 cut(s)	164, 782, 959, 1154, 1163
BstNI	CCWGG	2 cut(s)	789, 1191
BstPAI	GACNNNNGTC	1 cut(s)	509
BstSCI	CCNGG	3 cut(s)	573, 787, 1189
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	6 cut(s)	176, 760, 910, 1087, 1153, 1189
BstV2I	GAAGAC	1 cut(s)	480
BstZ17I	GTATAC	1 cut(s)	761
BsuRI	GGCC	3 cut(s)	39, 361, 911
BtsCI	GGATG	6 cut(s)	82, 227, 491, 715, 976, 1150
BtsIMutI	CAGTG	1 cut(s)	1035
Cac8I	GCNNGC	5 cut(s)	6, 10, 24, 160, 241
CaiI	CAGNNNCTG	1 cut(s)	1025
CfoI	GCGC	3 cut(s)	164, 804, 1277
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	3 cut(s)	50, 461, 1123
Csp6I	GTAC	3 cut(s)	82, 323, 1211
CviQI	GTAC	3 cut(s)	82, 323, 1211
DdeI	CTNAG	5 cut(s)	675, 705, 1038, 1050, 1308
DpnI	GATC	2 cut(s)	864, 957
DpnII	GATC	2 cut(s)	862, 955
EaeI	YGGCCR	1 cut(s)	909
Eco147I	AGGCCT	1 cut(s)	361
Eco47I	GGWCC	3 cut(s)	50, 461, 1123
EcoRII	CCWGG	2 cut(s)	787, 1189
Esp3I	CGTCTC	1 cut(s)	497
FaqI	GGGAC	2 cut(s)	36, 1214
FauNDI	CATATG	1 cut(s)	1225
FbaI	TGATCA	1 cut(s)	955
FblI	GTMKAC	2 cut(s)	760, 871
Fnu4HI	GCNGC	6 cut(s)	165, 774, 899, 1101, 1167, 1203
FokI	GGATG	6 cut(s)	89, 214, 478, 722, 983, 1157
Fsp4HI	GCNGC	6 cut(s)	165, 774, 899, 1101, 1167, 1203
FspBI	CTAG	6 cut(s)	123, 186, 344, 357, 984, 1271
GlaI	GCGC	3 cut(s)	163, 803, 1276
GluI	GCNGC	6 cut(s)	165, 774, 899, 1101, 1167, 1203
GsaI	CCCAGC	1 cut(s)	411
HaeII	RGCGCY	1 cut(s)	1278
HaeIII	GGCC	3 cut(s)	39, 361, 911
HapII	CCGG	2 cut(s)	9, 575
HhaI	GCGC	3 cut(s)	164, 804, 1277
Hin6I	GCGC	3 cut(s)	162, 802, 1275
HinP1I	GCGC	3 cut(s)	162, 802, 1275
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HindIII	AAGCTT	3 cut(s)	20, 254, 960
HinfI	GANTC	6 cut(s)	200, 485, 609, 733, 935, 1022
HpaII	CCGG	2 cut(s)	9, 575
HphI	GGTGA	5 cut(s)	112, 221, 265, 809, 931
Hpy166II	GTNNAC	4 cut(s)	337, 745, 761, 872
Hpy188I	TCNGA	1 cut(s)	1015
Hpy188III	TCNNGA	4 cut(s)	374, 613, 928, 984
Hpy8I	GTNNAC	4 cut(s)	337, 745, 761, 872
Hpy99I	CGWCG	1 cut(s)	515
HpyAV	CCTTC	5 cut(s)	298, 518, 925, 1172, 1285
HpyCH4III	ACNGT	5 cut(s)	86, 322, 511, 892, 1127
HpyF10VI	GCNNNNNNNGC	5 cut(s)	164, 782, 959, 1154, 1163
HpyF3I	CTNAG	5 cut(s)	675, 705, 1038, 1050, 1308
HspAI	GCGC	3 cut(s)	162, 802, 1275
KroI	GCCGGC	1 cut(s)	8
KroNI	GCCGGC	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	955
Kzo9I	GATC	2 cut(s)	862, 955
LmnI	GCTCC	1 cut(s)	1137
Lsp1109I	GCAGC	6 cut(s)	176, 760, 910, 1087, 1153, 1189
LweI	GCATC	7 cut(s)	19, 133, 236, 404, 433, 1135, 1246
MaeI	CTAG	6 cut(s)	123, 186, 344, 357, 984, 1271
MaeIII	GTNAC	6 cut(s)	112, 209, 271, 565, 919, 1294
MalI	GATC	2 cut(s)	864, 957
MboI	GATC	2 cut(s)	862, 955
MboII	GAAGA	4 cut(s)	480, 533, 640, 1265
MfeI	CAATTG	2 cut(s)	117, 995
MlsI	TGGCCA	1 cut(s)	911
MluCI	AATT	9 cut(s)	117, 297, 423, 560, 581, 651, 987, 995, 1043
MluNI	TGGCCA	1 cut(s)	911
MlyI	GAGTC	4 cut(s)	494, 618, 727, 929
MmeI	TCCRAC	2 cut(s)	54, 439
Mox20I	TGGCCA	1 cut(s)	911
MroNI	GCCGGC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	911
MseI	TTAA	3 cut(s)	300, 366, 384
Msp20I	TGGCCA	1 cut(s)	911
MspI	CCGG	2 cut(s)	9, 575
MspR9I	CCNGG	3 cut(s)	575, 789, 1191
MunI	CAATTG	2 cut(s)	117, 995
Mva1269I	GAATGC	2 cut(s)	607, 1159
MvaI	CCWGG	2 cut(s)	789, 1191
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	5 cut(s)	164, 782, 959, 1154, 1163
NaeI	GCCGGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	575
NdeI	CATATG	1 cut(s)	1225
NdeII	GATC	2 cut(s)	862, 955
NgoMIV	GCCGGC	1 cut(s)	8
NlaIV	GGNNCC	2 cut(s)	52, 844
NmeAIII	GCCGAG	1 cut(s)	871
NmuCI	GTSAC	3 cut(s)	209, 271, 919
PceI	AGGCCT	1 cut(s)	361
PctI	GAATGC	2 cut(s)	607, 1159
PdiI	GCCGGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	200, 1022
PflMI	CCANNNNNTGG	1 cut(s)	794
PkrI	GCNGC	6 cut(s)	166, 775, 900, 1102, 1168, 1204
PleI	GAGTC	4 cut(s)	493, 617, 727, 929
PpsI	GAGTC	4 cut(s)	493, 617, 727, 929
PshAI	GACNNNNGTC	1 cut(s)	509
PsiI	TTATAA	1 cut(s)	1088
Psp6I	CCWGG	2 cut(s)	787, 1189
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	2 cut(s)	787, 1189
PspN4I	GGNNCC	2 cut(s)	52, 844
PspPI	GGNCC	3 cut(s)	50, 461, 1123
PstNI	CAGNNNCTG	1 cut(s)	1025
RsaI	GTAC	3 cut(s)	83, 324, 1212
RsaNI	GTAC	3 cut(s)	82, 323, 1211
SaqAI	TTAA	3 cut(s)	300, 366, 384
SatI	GCNGC	6 cut(s)	165, 774, 899, 1101, 1167, 1203
Sau3AI	GATC	2 cut(s)	862, 955
Sau96I	GGNCC	3 cut(s)	50, 461, 1123
SchI	GAGTC	4 cut(s)	494, 618, 727, 929
ScrFI	CCNGG	3 cut(s)	575, 789, 1191
SfaNI	GCATC	7 cut(s)	19, 133, 236, 404, 433, 1135, 1246
SinI	GGWCC	3 cut(s)	50, 461, 1123
SmlI	CTYRAG	1 cut(s)	1118
SmoI	CTYRAG	1 cut(s)	1118
Sse9I	AATT	9 cut(s)	117, 297, 423, 560, 581, 651, 987, 995, 1043
SseBI	AGGCCT	1 cut(s)	361
SsiI	CCGC	1 cut(s)	1197
SspMI	CTAG	6 cut(s)	123, 186, 344, 357, 984, 1271
StuI	AGGCCT	1 cut(s)	361
StyD4I	CCNGG	3 cut(s)	573, 787, 1189
TaaI	ACNGT	5 cut(s)	86, 322, 511, 892, 1127
TaqI	TCGA	3 cut(s)	450, 513, 929
TasI	AATT	9 cut(s)	117, 297, 423, 560, 581, 651, 987, 995, 1043
TatI	WGTACW	1 cut(s)	322
TfiI	GAWTC	2 cut(s)	200, 1022
Tru1I	TTAA	3 cut(s)	300, 366, 384
Tru9I	TTAA	3 cut(s)	300, 366, 384
TscAI	CASTG	1 cut(s)	1042
TseFI	GTSAC	3 cut(s)	209, 271, 919
TseI	GCWGC	6 cut(s)	164, 773, 898, 1100, 1166, 1202
Tsp45I	GTSAC	3 cut(s)	209, 271, 919
TspDTI	ATGAA	1 cut(s)	480
TspGWI	ACGGA	1 cut(s)	1124
TspRI	CASTG	1 cut(s)	1042
Van91I	CCANNNNNTGG	1 cut(s)	794
VpaK11BI	GGWCC	3 cut(s)	50, 461, 1123
XbaI	TCTAGA	1 cut(s)	983
XmiI	GTMKAC	2 cut(s)	760, 871
XspI	CTAG	6 cut(s)	123, 186, 344, 357, 984, 1271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.