Rh5DG415300

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
N/A
Physical Location & Seq
Forward (+)
66041953 .. 66042270
318 bp
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UTR
Exon/CDS
Intron
Rh5DG415300.1

Sequence Viewer

Length: 318 bp
ATGTATTTGCCGAAAGGAATTAGACACCTCACCTTACTTCAATTTTTATATTTTCATGGATGTGTCAACCTTAAATCTTTGGGAGAAGAGATCGAATTCCTCAACAACCTTCGTAATTTGTGGATTAGCAGTTGTAATAATTTGGAATCCTTGCCACCAAATATGAAACGCATGACTACTTTAGATACTTTGACTGTCGATGATTGCGAGGAGCTTCAGTTGATGATGAGATCAGGGGAAGGTCCTCAAGGTCTTCGATCATTGATTATCATGAAATCAAGTTTGGAGACTTTGCCCCCTTGGCTTGAAGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

12.08

Weight (kDa)

5.05

Isoelectric Point (pI)

64.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 3 - 103 4.2e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 200
AgsI TTSAA 2 cut(s) 41, 308
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
Alw26I GTCTC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 22
AvaII GGWCC 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 281
BglI GCCNNNNNGGC 1 cut(s) 301
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 299
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 1 cut(s) 65
BseRI GAGGAG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 281
Bsp143I GATC 3 cut(s) 90, 230, 257
BspHI TCATGA 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 3 cut(s) 90, 230, 257
BssT1I CCWWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 81
BstF5I GGATG 1 cut(s) 65
BstKTI GATC 3 cut(s) 93, 233, 260
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 3 cut(s) 90, 230, 257
BstMWI GCNNNNNNNGC 1 cut(s) 301
BstV2I GAAGAC 1 cut(s) 245
BtsCI GGATG 1 cut(s) 65
CciI TCATGA 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 242
CviAII CATG 3 cut(s) 56, 172, 271
CviJI RGCY 2 cut(s) 214, 304
CviKI_1 RGCY 2 cut(s) 214, 304
DpnI GATC 3 cut(s) 92, 232, 259
DpnII GATC 3 cut(s) 90, 230, 257
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 242
EcoRI GAATTC 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 3 cut(s) 59, 175, 274
FaiI YATR 5 cut(s) 49, 57, 164, 173, 272
FatI CATG 3 cut(s) 55, 171, 270
FokI GGATG 1 cut(s) 72
Hin1II CATG 3 cut(s) 59, 175, 274
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 2 cut(s) 146, 311
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 67
Hpy188III TCNNGA 2 cut(s) 271, 315
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 119, 233
HpyCH4III ACNGT 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 301
Hsp92II CATG 3 cut(s) 59, 175, 274
Kzo9I GATC 3 cut(s) 90, 230, 257
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 1 cut(s) 219
MalI GATC 3 cut(s) 92, 232, 259
MboI GATC 3 cut(s) 90, 230, 257
MboII GAAGA 2 cut(s) 98, 245
MluCI AATT 5 cut(s) 18, 41, 95, 115, 139
MnlI CCTC 4 cut(s) 38, 110, 202, 255
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 301
NdeII GATC 3 cut(s) 90, 230, 257
NlaIII CATG 3 cut(s) 59, 175, 274
PagI TCATGA 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PfeI GAWTC 2 cut(s) 146, 311
PpuMI RGGWCCY 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 242
PspPI GGNCC 1 cut(s) 242
PspPPI RGGWCCY 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 60
SaqAI TTAA 1 cut(s) 72
Sau3AI GATC 3 cut(s) 90, 230, 257
Sau96I GGNCC 1 cut(s) 242
SetI ASST 7 cut(s) 30, 35, 72, 111, 216, 244, 253
SgeI CNNG 9 cut(s) 68, 163, 184, 220, 246, 260, 283, 291, 312
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
Sse9I AATT 5 cut(s) 18, 41, 95, 115, 139
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 3 cut(s) 93, 198, 256
TasI AATT 5 cut(s) 18, 41, 95, 115, 139
TfiI GAWTC 2 cut(s) 146, 311
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TspDTI ATGAA 3 cut(s) 44, 179, 287
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.