Rh5DG420100

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
N/A
Physical Location & Seq
Forward (+)
66878459 .. 66879114
656 bp
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UTR
Exon/CDS
Intron
Rh5DG420100.1

Sequence Viewer

Length: 381 bp
ATGAGTTCGATTATGCCGAAGCACCAAACAAGAAACAAAGATAGGATCAGTGCATTACCAGATGCACTTATTTGTCACAAACTTTCCTCACTTCGTACCGTCGAGGTTTTAGAGACCATGGTTTTGTCTAAAAGATGGAAGAACATGCGGGCTTCTGTTTCCAATTTAGACTTCGACTACAAAAGGGATTTTGGAAGAGCAGATATTCAAATTTTTGAAATGGTTGTGAGTCGTCTACTCTATATGCGTGACTCATTAGACGTACAAAAGTTTCGTCTTATAATTTCCTCTACTGGGTATTTTCGTGCTATTGACTATTGGATGTACTCTGTAGTTAGGCGTAATGTTGTTGAGTTTGATCTTCATATGTTGATTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

15.0

Weight (kDa)

9.56

Isoelectric Point (pI)

55.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
AccI GTMKAC 1 cut(s) 235
AciI CCGC 1 cut(s) 148
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 1 cut(s) 210
AfaI GTAC 3 cut(s) 97, 264, 326
AfiI CCNNNNNNNGG 1 cut(s) 294
AgsI TTSAA 3 cut(s) 209, 218, 377
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 210
ArsI GACNNNNNNTTYG 4 cut(s) 106, 138, 259, 291
BccI CCATC 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 330
BmrI ACTGGG 1 cut(s) 303
BmsI GCATC 1 cut(s) 52
BmuI ACTGGG 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse1I ACTGG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 298
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 107
Bso31I GGTCTC 1 cut(s) 107
Bsp143I GATC 2 cut(s) 45, 358
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 1 cut(s) 148
BspPI GGATC 1 cut(s) 53
BspQI GCTCTTC 1 cut(s) 190
BspTNI GGTCTC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 2 cut(s) 45, 358
BssT1I CCWWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 2 cut(s) 48, 361
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 2 cut(s) 45, 358
BstNSI RCATGY 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 330
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 150
Csp6I GTAC 3 cut(s) 96, 263, 325
CviAII CATG 2 cut(s) 118, 145
CviJI RGCY 1 cut(s) 152
CviKI_1 RGCY 1 cut(s) 152
CviQI GTAC 3 cut(s) 96, 263, 325
DpnI GATC 2 cut(s) 47, 360
DpnII GATC 2 cut(s) 45, 358
Eam1104I CTCTTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 2 cut(s) 121, 148
FaiI YATR 8 cut(s) 14, 119, 146, 243, 245, 281, 366, 368
FatI CATG 2 cut(s) 117, 144
FauI CCCGC 1 cut(s) 141
FauNDI CATATG 1 cut(s) 366
FblI GTMKAC 1 cut(s) 235
FokI GGATG 1 cut(s) 334
Hin1II CATG 2 cut(s) 121, 148
HinfI GANTC 2 cut(s) 229, 251
Hpy166II GTNNAC 1 cut(s) 236
Hpy8I GTNNAC 1 cut(s) 236
Hpy99I CGWCG 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 2 cut(s) 53, 65
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 2 cut(s) 121, 148
Kzo9I GATC 2 cut(s) 45, 358
LguI GCTCTTC 1 cut(s) 190
LpnPI CCDG 2 cut(s) 72, 279
LweI GCATC 1 cut(s) 52
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 74, 248
MalI GATC 2 cut(s) 47, 360
MboI GATC 2 cut(s) 45, 358
MboII GAAGA 3 cut(s) 151, 207, 353
MluCI AATT 3 cut(s) 163, 210, 282
MlyI GAGTC 2 cut(s) 238, 245
MnlI CCTC 3 cut(s) 97, 97, 298
NcoI CCATGG 1 cut(s) 117
NdeI CATATG 1 cut(s) 366
NdeII GATC 2 cut(s) 45, 358
NlaIII CATG 2 cut(s) 121, 148
NmuCI GTSAC 2 cut(s) 74, 248
NspI RCATGY 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 190
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PleI GAGTC 2 cut(s) 237, 245
PpsI GAGTC 2 cut(s) 237, 245
PsiI TTATAA 1 cut(s) 281
RsaI GTAC 3 cut(s) 97, 264, 326
RsaNI GTAC 3 cut(s) 96, 263, 325
SapI GCTCTTC 1 cut(s) 190
Sau3AI GATC 2 cut(s) 45, 358
SchI GAGTC 2 cut(s) 238, 245
SetI ASST 2 cut(s) 108, 264
SfaNI GCATC 1 cut(s) 52
SfcI CTRYAG 1 cut(s) 330
SgeI CNNG 9 cut(s) 42, 71, 115, 130, 157, 161, 260, 306, 317
Sse9I AATT 3 cut(s) 163, 210, 282
SsiI CCGC 1 cut(s) 148
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 1 cut(s) 264
TaqI TCGA 3 cut(s) 8, 102, 174
TasI AATT 3 cut(s) 163, 210, 282
TatI WGTACW 1 cut(s) 324
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 2 cut(s) 74, 248
Tsp45I GTSAC 2 cut(s) 74, 248
TspDTI ATGAA 1 cut(s) 353
TspRI CASTG 1 cut(s) 55
XapI RAATTY 1 cut(s) 210
XceI RCATGY 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.