Rh5DG447600

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
N/A
Physical Location & Seq
Reverse (-)
71381219 .. 71390627
9409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG447600.1

Sequence Viewer

Length: 285 bp
ATGGAGGACGACGAGTACTGGGCTTGGGAATCCTTCTATTCAGATTGGAGCACCTTCTACAGTGGGTATGAAACAGAGCTTATCAAAGAAATTGTAGATGTAATAGGGGAGAAAGTGTATCCTACGTTCACATTGTCAGATTCGACAGAGAACTTTTATTCAGAAGCTTGGCCGTTGCATGAGAAACCCACAAGAGATGTTGTGAAATATGATCCGCTGCCAAAGCATTTTCTCATGTACTCTGCTCAGATTTTCCAGACATTAGTCCACATTATTCATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

11.33

Weight (kDa)

4.55

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 215
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 170
AfaI GTAC 2 cut(s) 17, 239
AluBI AGCT 2 cut(s) 79, 167
AluI AGCT 2 cut(s) 79, 167
Alw21I GWGCWC 1 cut(s) 53
AlwI GGATC 1 cut(s) 206
AoxI GGCC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 204
BceAI ACGGC 1 cut(s) 157
BciVI GTATCC 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 58
BfuI GTATCC 1 cut(s) 129
BisI GCNGC 1 cut(s) 218
BlsI GCNGC 1 cut(s) 219
BmcAI AGTACT 1 cut(s) 17
BmrI ACTGGG 1 cut(s) 28
BmuI ACTGGG 1 cut(s) 28
BoxI GACNNNNGTC 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bse1I ACTGG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 204
BshFI GGCC 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 53
BsnI GGCC 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 1 cut(s) 215
BspANI GGCC 1 cut(s) 172
BspCNI CTCAG 1 cut(s) 259
BspPI GGATC 1 cut(s) 206
BsrI ACTGG 1 cut(s) 23
BssMI GATC 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 246
BstKTI GATC 1 cut(s) 214
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstPAI GACNNNNGTC 1 cut(s) 263
BstSFI CTRYAG 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 204
BsuI GTATCC 1 cut(s) 129
BsuRI GGCC 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 67
Csp6I GTAC 2 cut(s) 16, 238
CviAII CATG 2 cut(s) 179, 235
CviJI RGCY 4 cut(s) 23, 79, 167, 172
CviKI_1 RGCY 4 cut(s) 23, 79, 167, 172
CviQI GTAC 2 cut(s) 16, 238
DdeI CTNAG 1 cut(s) 246
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 170
FaeI CATG 2 cut(s) 182, 238
FaiI YATR 4 cut(s) 69, 180, 210, 236
FatI CATG 2 cut(s) 178, 234
Fnu4HI GCNGC 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 218
GluI GCNGC 1 cut(s) 218
HaeIII GGCC 1 cut(s) 172
Hin1II CATG 2 cut(s) 182, 238
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 2 cut(s) 29, 140
Hpy166II GTNNAC 2 cut(s) 129, 268
Hpy188I TCNGA 4 cut(s) 43, 139, 163, 249
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 2 cut(s) 129, 268
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 43, 64
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 125
Hsp92II CATG 2 cut(s) 182, 238
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 2 cut(s) 4, 269
Lsp1109I GCAGC 1 cut(s) 204
MaeII ACGT 1 cut(s) 125
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 223
NdeII GATC 1 cut(s) 211
NlaIII CATG 2 cut(s) 182, 238
PfeI GAWTC 2 cut(s) 29, 140
PkrI GCNGC 1 cut(s) 219
PshAI GACNNNNGTC 1 cut(s) 263
PsrI GAACNNNNNNTAC 2 cut(s) 110, 142
RsaI GTAC 2 cut(s) 17, 239
RsaNI GTAC 2 cut(s) 16, 238
SatI GCNGC 1 cut(s) 218
Sau3AI GATC 1 cut(s) 211
ScaI AGTACT 1 cut(s) 17
SduI GDGCHC 1 cut(s) 53
SetI ASST 4 cut(s) 56, 81, 128, 169
SfcI CTRYAG 1 cut(s) 58
SgeI CNNG 8 cut(s) 25, 31, 36, 180, 191, 204, 247, 268
Sse9I AATT 1 cut(s) 90
SsiI CCGC 1 cut(s) 215
TaaI ACNGT 1 cut(s) 62
TaiI ACGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 143
TasI AATT 1 cut(s) 90
TatI WGTACW 2 cut(s) 15, 237
TfiI GAWTC 2 cut(s) 29, 140
TscAI CASTG 1 cut(s) 67
TseI GCWGC 1 cut(s) 217
TspDTI ATGAA 2 cut(s) 84, 266
TspRI CASTG 1 cut(s) 67
ZrmI AGTACT 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.