Rh5DG511000

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
N/A
Physical Location & Seq
Forward (+)
79802042 .. 79802539
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG511000.1

Sequence Viewer

Length: 498 bp
ATGTACATGGGATTTGCAGGCTGTGCTGTTTTTGAAATCAAAGGGATGGTCAGATTCCGAAAAAGAAAACGAGATGGTCTGGGTACCAGCCAGACGTTGAGCCAAGCTGTGCCCCATCACCTTTGGTTTGAGTACACACCTCGTCATATACATTATGAGGATTGGCAAAGGTGGGATTGGCAAAGGTGGCAAAATTGTAGGCGGCTAAAATTTTCATTTGAGGGTACATTTGATCAAGACATAGTGAAGTGTGGGGTTCGGATAGTGTACGAGCCAGATATCCAAAGCTTAAATGAATCGTTGAAAAAGAGTAACTTTGGCACTTCTCCAGATTATGCTTTGGAATTCCCTGGCAAAGCAGCAGCTGTATCTGCAGGTAGCAGTACCAAGTATGGCACCCTTGAACACCATGATGAGGCAGCACCGAGTGGAAGTGGTTACCATGGCTCTATCACTATGGAACCTGATCTGGAGATCAGGTTCCATATTGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

165

Amino Acids

19.01

Weight (kDa)

7.09

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 365
Acc65I GGTACC 1 cut(s) 83
AccB1I GGYRCC 2 cut(s) 83, 395
AciI CCGC 1 cut(s) 202
AcsI RAATTY 2 cut(s) 209, 344
AdeI CACNNNGTG 1 cut(s) 428
AfaI GTAC 6 cut(s) 5, 85, 134, 226, 269, 385
AfiI CCNNNNNNNGG 1 cut(s) 415
AgsI TTSAA 3 cut(s) 35, 304, 404
AjnI CCWGG 1 cut(s) 349
AloI GAACNNNNNNTCC 2 cut(s) 464, 496
AluBI AGCT 3 cut(s) 107, 288, 365
AluI AGCT 3 cut(s) 107, 288, 365
AlwNI CAGNNNCTG 1 cut(s) 365
ApeKI GCWGC 3 cut(s) 359, 362, 419
ApoI RAATTY 2 cut(s) 209, 344
ArsI GACNNNNNNTTYG 2 cut(s) 33, 65
Asp718I GGTACC 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 114
BanI GGYRCC 2 cut(s) 83, 395
BbvI GCAGC 3 cut(s) 371, 374, 431
BccI CCATC 3 cut(s) 40, 68, 123
BciT130I CCWGG 1 cut(s) 351
BclI TGATCA 1 cut(s) 232
BfmI CTRYAG 1 cut(s) 372
BfuAI ACCTGC 1 cut(s) 365
BisI GCNGC 4 cut(s) 203, 360, 363, 420
BlsI GCNGC 4 cut(s) 204, 361, 364, 421
Bme1390I CCNGG 1 cut(s) 351
BmiI GGNNCC 4 cut(s) 85, 397, 462, 482
BmrFI CCNGG 1 cut(s) 351
BpmI CTGGAG 2 cut(s) 312, 491
BsaJI CCNNGG 2 cut(s) 349, 442
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bsc4I CCNNNNNNNGG 1 cut(s) 415
BseBI CCWGG 1 cut(s) 351
BseDI CCNNGG 2 cut(s) 349, 442
BseGI GGATG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 415
BseSI GKGCMC 1 cut(s) 114
BseXI GCAGC 3 cut(s) 371, 374, 431
BshNI GGYRCC 2 cut(s) 83, 395
BslI CCNNNNNNNGG 1 cut(s) 415
Bsp1286I GDGCHC 1 cut(s) 114
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 232, 466, 474
Bsp19I CCATGG 1 cut(s) 442
BspACI CCGC 1 cut(s) 202
BspLI GGNNCC 4 cut(s) 85, 397, 462, 482
BspMAI CTGCAG 1 cut(s) 376
BspMI ACCTGC 1 cut(s) 365
BspT107I GGYRCC 2 cut(s) 83, 395
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 2 cut(s) 349, 442
BssMI GATC 3 cut(s) 232, 466, 474
BssT1I CCWWGG 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 351
BstAPI GCANNNNNTGC 1 cut(s) 23
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 19
BstDSI CCRYGG 1 cut(s) 442
BstEII GGTNACC 1 cut(s) 437
BstF5I GGATG 1 cut(s) 51
BstKTI GATC 3 cut(s) 235, 469, 477
BstMBI GATC 3 cut(s) 232, 466, 474
BstMWI GCNNNNNNNGC 3 cut(s) 23, 187, 371
BstNI CCWGG 1 cut(s) 351
BstPI GGTNACC 1 cut(s) 437
BstSCI CCNGG 1 cut(s) 349
BstSFI CTRYAG 1 cut(s) 372
BstSLI GKGCMC 1 cut(s) 114
BstV1I GCAGC 3 cut(s) 371, 374, 431
BtgI CCRYGG 1 cut(s) 442
BtsCI GGATG 1 cut(s) 51
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 1 cut(s) 19
CaiI CAGNNNCTG 1 cut(s) 365
Csp6I GTAC 6 cut(s) 4, 84, 133, 225, 268, 384
CviAII CATG 3 cut(s) 7, 410, 443
CviJI RGCY 9 cut(s) 21, 90, 102, 107, 205, 274, 288, 365, 447
CviKI_1 RGCY 9 cut(s) 21, 90, 102, 107, 205, 274, 288, 365, 447
CviQI GTAC 6 cut(s) 4, 84, 133, 225, 268, 384
DpnI GATC 3 cut(s) 234, 468, 476
DpnII GATC 3 cut(s) 232, 466, 474
DraIII CACNNNGTG 1 cut(s) 428
Eco130I CCWWGG 1 cut(s) 442
Eco32I GATATC 1 cut(s) 280
Eco91I GGTNACC 1 cut(s) 437
EcoO65I GGTNACC 1 cut(s) 437
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 349
EcoRV GATATC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 3 cut(s) 10, 413, 446
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FatI CATG 3 cut(s) 6, 409, 442
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 4 cut(s) 203, 360, 363, 420
FokI GGATG 1 cut(s) 58
Fsp4HI GCNGC 4 cut(s) 203, 360, 363, 420
GluI GCNGC 4 cut(s) 203, 360, 363, 420
GsuI CTGGAG 2 cut(s) 312, 491
Hin1II CATG 3 cut(s) 10, 413, 446
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 2 cut(s) 54, 296
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 135, 268
Hpy188I TCNGA 3 cut(s) 53, 59, 261
Hpy188III TCNNGA 3 cut(s) 236, 329, 470
Hpy8I GTNNAC 2 cut(s) 135, 268
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 17, 374
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 187, 371
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 3 cut(s) 10, 413, 446
KpnI GGTACC 1 cut(s) 87
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 3 cut(s) 232, 466, 474
Lsp1109I GCAGC 3 cut(s) 371, 374, 431
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 2 cut(s) 311, 437
MalI GATC 3 cut(s) 234, 468, 476
MboI GATC 3 cut(s) 232, 466, 474
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 3 cut(s) 193, 209, 344
MnlI CCTC 4 cut(s) 150, 151, 214, 409
MseI TTAA 1 cut(s) 290
MslI CAYNNNNRTG 1 cut(s) 411
MspA1I CMGCKG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 351
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 3 cut(s) 23, 187, 371
NcoI CCATGG 1 cut(s) 442
NdeII GATC 3 cut(s) 232, 466, 474
NlaIII CATG 3 cut(s) 10, 413, 446
NlaIV GGNNCC 4 cut(s) 85, 397, 462, 482
PfeI GAWTC 2 cut(s) 54, 296
PkrI GCNGC 4 cut(s) 204, 361, 364, 421
Psp6I CCWGG 1 cut(s) 349
PspEI GGTNACC 1 cut(s) 437
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 4 cut(s) 85, 397, 462, 482
PstI CTGCAG 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 365
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 6 cut(s) 5, 85, 134, 226, 269, 385
RsaNI GTAC 6 cut(s) 4, 84, 133, 225, 268, 384
RseI CAYNNNNRTG 1 cut(s) 411
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 4 cut(s) 203, 360, 363, 420
Sau3AI GATC 3 cut(s) 232, 466, 474
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 1 cut(s) 114
SfcI CTRYAG 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 411
Sse9I AATT 3 cut(s) 193, 209, 344
SsiI CCGC 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 349
StyI CCWWGG 1 cut(s) 442
TaiI ACGT 1 cut(s) 98
TasI AATT 3 cut(s) 193, 209, 344
TatI WGTACW 2 cut(s) 3, 132
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 2 cut(s) 54, 296
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TseI GCWGC 3 cut(s) 359, 362, 419
TspDTI ATGAA 2 cut(s) 204, 309
XapI RAATTY 2 cut(s) 209, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.