Rh5DG554000

Mitogen-activated protein kinase kinase kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
N/A
Physical Location & Seq
Reverse (-)
85604482 .. 85604900
419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG554000.1

Sequence Viewer

Length: 419 bp
ATGGACGTCTCTCGAAAATGGCATGCATCTGATAATATTTTCGGTCGTCGTCCATCATCTGATATTTTCGGTCGTCGTCCATCATCTGATATTTTCGGTCGTCGTCCATCATCAGATATTTTCGGTTGTCGGTTGTTCGACAGGGACAGAGGCCCTCCAGATACTGATTGTCGGATTTTCGAAAGATGGTTGTTCGACAGGGACAGATGCCCTCCAGCTACTGATTGTCCACCAGCATCTCCTCCTCGGAGAGATCACGTCGAAGCCATTGTGGAACCTGTTACGGCAAAAATTCAAGCCACATTGGCGGGGCTGAGTGGGTATTCTACTGGAAAGTCTAAGCTTACTGTCACTAATTGGGAAAAGGGTGATCATCTCGGCAGCGGCTGTTTCGGGTCTGTGTATGAAGGAATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007584 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009631 GO:0009651 GO:0009888 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010449 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0022622 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0031410 GO:0031667 GO:0031982 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035266 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0097159 GO:0097708 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902065 GO:1902531 GO:1902533
KEGG Pathways
Metabolic & Signaling
ko04016 ko04626 map04016 map04626
Pfam Domains
Protein Families
Pkinase

Protein Analysis

139

Amino Acids

15.5

Weight (kDa)

8.34

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 9
AciI CCGC 2 cut(s) 308, 384
AcsI RAATTY 1 cut(s) 291
AcyI GRCGYC 1 cut(s) 6
AgsI TTSAA 1 cut(s) 296
AjiI CACGTC 1 cut(s) 259
AluBI AGCT 2 cut(s) 218, 343
AluI AGCT 2 cut(s) 218, 343
Alw26I GTCTC 1 cut(s) 13
AlwNI CAGNNNCTG 3 cut(s) 164, 221, 387
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 381
ApoI RAATTY 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 380
AsuII TTCGAA 1 cut(s) 180
BbvI GCAGC 1 cut(s) 393
BccI CCATC 4 cut(s) 61, 88, 115, 180
BceAI ACGGC 1 cut(s) 300
BclI TGATCA 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 13
BglI GCCNNNNNGGC 1 cut(s) 305
BisI GCNGC 2 cut(s) 382, 385
BlsI GCNGC 2 cut(s) 383, 386
BmgBI CACGTC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 276
BmsI GCATC 3 cut(s) 35, 197, 245
BpmI CTGGAG 2 cut(s) 141, 198
Bpu14I TTCGAA 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 334
BseDI CCNNGG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 334
BseRI GAGGAG 2 cut(s) 231, 234
BseXI GCAGC 1 cut(s) 393
Bsh1285I CGRYCG 3 cut(s) 46, 73, 100
BshFI GGCC 1 cut(s) 153
BsiEI CGRYCG 3 cut(s) 46, 73, 100
BslFI GGGAC 2 cut(s) 158, 215
BsmAI GTCTC 1 cut(s) 13
BsmBI CGTCTC 1 cut(s) 13
BsmFI GGGAC 2 cut(s) 158, 215
BsnI GGCC 1 cut(s) 153
Bsp119I TTCGAA 1 cut(s) 180
Bsp143I GATC 2 cut(s) 253, 370
BspACI CCGC 2 cut(s) 308, 384
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 276
BspT104I TTCGAA 1 cut(s) 180
BsrI ACTGG 1 cut(s) 334
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 2 cut(s) 253, 370
BssNI GRCGYC 1 cut(s) 6
Bst4CI ACNGT 1 cut(s) 349
BstACI GRCGYC 1 cut(s) 6
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 2 cut(s) 314, 339
BstKTI GATC 2 cut(s) 256, 373
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 2 cut(s) 253, 370
BstMCI CGRYCG 3 cut(s) 46, 73, 100
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 393
BsuRI GGCC 1 cut(s) 153
BtrI CACGTC 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 24
CaiI CAGNNNCTG 3 cut(s) 164, 221, 387
Cfr13I GGNCC 1 cut(s) 152
CviAII CATG 1 cut(s) 23
CviJI RGCY 7 cut(s) 153, 218, 266, 299, 313, 343, 387
CviKI_1 RGCY 7 cut(s) 153, 218, 266, 299, 313, 343, 387
DdeI CTNAG 2 cut(s) 314, 339
DpnI GATC 2 cut(s) 255, 372
DpnII GATC 2 cut(s) 253, 370
EcoO109I RGGNCCY 1 cut(s) 152
EcoT22I ATGCAT 1 cut(s) 28
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 1 cut(s) 26
FaiI YATR 2 cut(s) 24, 405
FaqI GGGAC 2 cut(s) 158, 215
FatI CATG 1 cut(s) 22
FauI CCCGC 1 cut(s) 301
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 2 cut(s) 382, 385
Fsp4HI GCNGC 2 cut(s) 382, 385
GluI GCNGC 2 cut(s) 382, 385
GsuI CTGGAG 2 cut(s) 141, 198
HaeIII GGCC 1 cut(s) 153
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 1 cut(s) 26
HindIII AAGCTT 1 cut(s) 341
HphI GGTGA 1 cut(s) 380
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 6 cut(s) 31, 61, 88, 115, 174, 249
Hpy188III TCNNGA 2 cut(s) 12, 158
Hpy8I GTNNAC 1 cut(s) 230
Hpy99I CGWCG 4 cut(s) 51, 78, 105, 263
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 2 cut(s) 6, 258
HpyCH4V TGCA 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 2 cut(s) 314, 339
HpySE526I ACGT 2 cut(s) 6, 258
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 2 cut(s) 253, 370
LpnPI CCDG 7 cut(s) 127, 171, 184, 228, 246, 291, 315
Lsp1109I GCAGC 1 cut(s) 393
LweI GCATC 3 cut(s) 35, 197, 245
MaeII ACGT 2 cut(s) 6, 258
MaeIII GTNAC 2 cut(s) 280, 349
MalI GATC 2 cut(s) 255, 372
MboI GATC 2 cut(s) 253, 370
MluCI AATT 3 cut(s) 291, 355, 411
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 5 cut(s) 143, 165, 222, 252, 255
Mph1103I ATGCAT 1 cut(s) 28
MspA1I CMGCKG 1 cut(s) 384
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 2 cut(s) 253, 370
NlaIII CATG 1 cut(s) 26
NlaIV GGNNCC 1 cut(s) 276
NmeAIII GCCGAG 1 cut(s) 357
NmuCI GTSAC 1 cut(s) 349
NsiI ATGCAT 1 cut(s) 28
NspI RCATGY 1 cut(s) 26
NspV TTCGAA 1 cut(s) 180
PaeI GCATGC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 383, 386
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 1 cut(s) 152
PstNI CAGNNNCTG 3 cut(s) 164, 221, 387
SatI GCNGC 2 cut(s) 382, 385
Sau3AI GATC 2 cut(s) 253, 370
Sau96I GGNCC 1 cut(s) 152
SetI ASST 5 cut(s) 9, 220, 261, 280, 345
SfaNI GCATC 3 cut(s) 35, 197, 245
SfuI TTCGAA 1 cut(s) 180
SphI GCATGC 1 cut(s) 26
Sse9I AATT 3 cut(s) 291, 355, 411
SsiI CCGC 2 cut(s) 308, 384
SspI AATATT 1 cut(s) 37
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 2 cut(s) 9, 261
TaqI TCGA 5 cut(s) 13, 138, 180, 195, 261
TaqII GACCGA 3 cut(s) 32, 59, 86
TasI AATT 3 cut(s) 291, 355, 411
TauI GCSGC 1 cut(s) 387
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 1 cut(s) 381
Tsp45I GTSAC 1 cut(s) 349
XapI RAATTY 1 cut(s) 291
XceI RCATGY 1 cut(s) 26
ZraI GACGTC 1 cut(s) 7
Zsp2I ATGCAT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.