Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

43771452 .. 43774140

Gene Structure 2689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG248100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGGAATTGCTGGTTTTCTTCTTCTTCAGCTGAAGACCCAACACCAACTACTACTGGTCATCTCAGTACAGTGCCGAGTAGCATATCACAATCAATTAGTAATGCCACATCCACTTCCGTGGGGAGCACTATATCAAGGAATAGCCAGTTTTCGGAGAGAAGTGGTGATGAGATCTGTCCAGATGGGCAGATCCTACCCGCGGCAAACTTGAGGATCTTCAGTTACCTAGAATTGAAGAGTGCTACTAGAAACTTCAGATCAGACACGGTTCTTGGGGAAGGAGGTTTTGGGAAGGTCTATAAAGGCTGGCTCGAGGAGAGGGCACCAACCAAGTCTGGAAAGACAACTGTAATTGCTGTAAAGAAATTGAATTCAGAGAGCTTGCAAGGTTTTGAGGAATGGCAGAGTGATGTGTACGGTTTTGGTGTTGTGTTGGTTGAGATCTTAACAGGCTTACGGGCACTTGATACGAATCGTCCAAGTGGAAAACATAATCTTGTGGAGTGGGTAAAACCATATTTAGCAGATAAAAGAAAATTGAAAGGCATTATGGACCCTCGACTGGAGGGAAAGTATCCAGCCAAAGCTGCATTCCGAATTTCTCAGCTTGCTCTAAAATGCATTGAATCTGAACACAAAAACCGGCCATCAATGAAGGTTGTTGTGGAGACTTTGGAAAGGATCGAATCTGTCAATGAACATATAAGGGAGCCTAGGATTCGTTCGACTCATTCTACTCATCCTATGGCTCATCGCCAAGGTCAGCCACCTTTGCACCATCGTTCTCCACTTCACCCCCGGTCAGATGGAAATCAAAACTACCAACAGTCACCTCGAACGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

282

Amino Acids

31.41

Weight (kDa)

9.51

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	325
AccII	CGCG	1 cut(s)	203
AciI	CCGC	2 cut(s)	201, 203
AclWI	GGATC	3 cut(s)	187, 224, 692
AcoI	YGGCCR	1 cut(s)	647
AcsI	RAATTY	2 cut(s)	373, 600
AcuI	CTGAAG	4 cut(s)	12, 54, 205, 241
AfaI	GTAC	2 cut(s)	70, 419
AfiI	CCNNNNNNNGG	3 cut(s)	154, 202, 565
AgsI	TTSAA	4 cut(s)	238, 373, 544, 629
AjuI	GAANNNNNNNTTGG	4 cut(s)	273, 305, 578, 610
AleI	CACNNNNGTG	1 cut(s)	119
AluBI	AGCT	4 cut(s)	32, 384, 590, 610
AluI	AGCT	4 cut(s)	32, 384, 590, 610
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	3 cut(s)	187, 224, 692
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	647
ApeKI	GCWGC	1 cut(s)	590
ApoI	RAATTY	2 cut(s)	373, 600
AspA2I	CCTAGG	1 cut(s)	716
AspS9I	GGNCC	1 cut(s)	556
AsuC2I	CCSGG	1 cut(s)	802
AsuHPI	GGTGA	3 cut(s)	179, 788, 825
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	556
AvrII	CCTAGG	1 cut(s)	716
BaeGI	GKGCMC	2 cut(s)	328, 466
BanI	GGYRCC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	577
BccI	CCATC	4 cut(s)	179, 658, 789, 803
BciVI	GTATCC	1 cut(s)	588
BcnI	CCSGG	1 cut(s)	802
BcoDI	GTCTC	1 cut(s)	665
BfaI	CTAG	3 cut(s)	230, 249, 717
BfuI	GTATCC	1 cut(s)	588
BglII	AGATCT	2 cut(s)	174, 444
BisI	GCNGC	2 cut(s)	204, 591
BlnI	CCTAGG	1 cut(s)	716
BlsI	GCNGC	2 cut(s)	205, 592
Bme1390I	CCNGG	1 cut(s)	802
Bme18I	GGWCC	1 cut(s)	556
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	3 cut(s)	327, 558, 714
BmrFI	CCNGG	1 cut(s)	802
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	587
BpuEI	CTTGAG	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	802
BsaBI	GATNNNNATC	2 cut(s)	474, 813
BsaJI	CCNNGG	5 cut(s)	120, 201, 716, 760, 800
BsaXI	ACNNNNNCTCC	2 cut(s)	560, 590
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 202, 565
Bse118I	RCCGGY	1 cut(s)	645
Bse1I	ACTGG	3 cut(s)	61, 148, 570
Bse8I	GATNNNNATC	2 cut(s)	474, 813
BseDI	CCNNGG	5 cut(s)	120, 201, 716, 760, 800
BseGI	GGATG	2 cut(s)	110, 742
BseJI	GATNNNNATC	2 cut(s)	474, 813
BseLI	CCNNNNNNNGG	3 cut(s)	154, 202, 565
BseMII	CTCAG	2 cut(s)	79, 620
BseNI	ACTGG	3 cut(s)	61, 148, 570
BseRI	GAGGAG	1 cut(s)	332
BseSI	GKGCMC	2 cut(s)	328, 466
BseXI	GCAGC	1 cut(s)	577
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	649
BshNI	GGYRCC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	2 cut(s)	646, 802
BslI	CCNNNNNNNGG	3 cut(s)	154, 202, 565
BsmAI	GTCTC	1 cut(s)	665
BsmI	GAATGC	1 cut(s)	593
BsnI	GGCC	1 cut(s)	649
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	3 cut(s)	131, 328, 466
Bsp143I	GATC	6 cut(s)	174, 192, 216, 260, 444, 684
BspACI	CCGC	2 cut(s)	201, 203
BspANI	GGCC	1 cut(s)	649
BspCNI	CTCAG	2 cut(s)	78, 619
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	3 cut(s)	327, 558, 714
BspPI	GGATC	3 cut(s)	187, 224, 692
BspT107I	GGYRCC	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	645
BsrI	ACTGG	3 cut(s)	61, 148, 570
BssAI	RCCGGY	1 cut(s)	645
BssECI	CCNNGG	5 cut(s)	120, 201, 716, 760, 800
BssMI	GATC	6 cut(s)	174, 192, 216, 260, 444, 684
BssT1I	CCWWGG	2 cut(s)	716, 760
Bst4CI	ACNGT	5 cut(s)	73, 271, 352, 422, 831
Bst6I	CTCTTC	1 cut(s)	233
BstC8I	GCNNGC	3 cut(s)	311, 386, 612
BstDEI	CTNAG	2 cut(s)	65, 606
BstDSI	CCRYGG	2 cut(s)	120, 201
BstF5I	GGATG	2 cut(s)	110, 742
BstFNI	CGCG	1 cut(s)	203
BstKTI	GATC	6 cut(s)	177, 195, 219, 263, 447, 687
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	6 cut(s)	174, 192, 216, 260, 444, 684
BstMWI	GCNNNNNNNGC	2 cut(s)	590, 775
BstSCI	CCNGG	1 cut(s)	800
BstSLI	GKGCMC	2 cut(s)	328, 466
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	577
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	4 cut(s)	174, 192, 216, 444
BstXI	CCANNNNNNTGG	1 cut(s)	121
BstYI	RGATCY	4 cut(s)	174, 192, 216, 444
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	1 cut(s)	649
BtgI	CCRYGG	2 cut(s)	120, 201
BtgZI	GCGATG	1 cut(s)	740
BtsCI	GGATG	2 cut(s)	110, 742
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	311, 386, 612
Cfr10I	RCCGGY	1 cut(s)	645
Cfr13I	GGNCC	1 cut(s)	556
Cfr42I	CCGCGG	1 cut(s)	204
Csp6I	GTAC	2 cut(s)	69, 418
CviQI	GTAC	2 cut(s)	69, 418
DdeI	CTNAG	2 cut(s)	65, 606
DpnI	GATC	6 cut(s)	176, 194, 218, 262, 446, 686
DpnII	GATC	6 cut(s)	174, 192, 216, 260, 444, 684
EaeI	YGGCCR	1 cut(s)	647
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco130I	CCWWGG	2 cut(s)	716, 760
Eco47I	GGWCC	1 cut(s)	556
Eco57I	CTGAAG	4 cut(s)	12, 54, 205, 241
Eco88I	CYCGRG	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	373
EcoT14I	CCWWGG	2 cut(s)	716, 760
EcoT22I	ATGCAT	1 cut(s)	626
ErhI	CCWWGG	2 cut(s)	716, 760
FaiI	YATR	9 cut(s)	86, 134, 303, 495, 520, 554, 705, 707, 749
FauI	CCCGC	1 cut(s)	208
Fnu4HI	GCNGC	2 cut(s)	204, 591
FokI	GGATG	2 cut(s)	97, 729
Fsp4HI	GCNGC	2 cut(s)	204, 591
FspBI	CTAG	3 cut(s)	230, 249, 717
GluI	GCNGC	2 cut(s)	204, 591
GsuI	CTGGAG	1 cut(s)	587
HaeIII	GGCC	1 cut(s)	649
HapII	CCGG	2 cut(s)	646, 802
HinfI	GANTC	5 cut(s)	475, 629, 689, 721, 730
HpaII	CCGG	2 cut(s)	646, 802
HphI	GGTGA	3 cut(s)	179, 788, 825
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	7 cut(s)	157, 260, 265, 379, 599, 634, 808
Hpy188III	TCNNGA	2 cut(s)	182, 339
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	3 cut(s)	275, 289, 652
HpyCH4III	ACNGT	5 cut(s)	73, 271, 352, 422, 831
HpyCH4V	TGCA	4 cut(s)	388, 593, 624, 778
HpyF10VI	GCNNNNNNNGC	2 cut(s)	590, 775
HpyF3I	CTNAG	2 cut(s)	65, 606
KspI	CCGCGG	1 cut(s)	204
Kzo9I	GATC	6 cut(s)	174, 192, 216, 260, 444, 684
LmnI	GCTCC	2 cut(s)	126, 712
Lsp1109I	GCAGC	1 cut(s)	577
MaeI	CTAG	3 cut(s)	230, 249, 717
MaeIII	GTNAC	2 cut(s)	224, 831
MalI	GATC	6 cut(s)	176, 194, 218, 262, 446, 686
MboI	GATC	6 cut(s)	174, 192, 216, 260, 444, 684
MboII	GAAGA	6 cut(s)	12, 15, 18, 47, 211, 250
MflI	RGATCY	4 cut(s)	174, 192, 216, 444
MhlI	GDGCHC	3 cut(s)	131, 328, 466
MluCI	AATT	8 cut(s)	7, 96, 233, 354, 368, 373, 539, 600
MlyI	GAGTC	1 cut(s)	724
MnlI	CCTC	9 cut(s)	207, 278, 310, 315, 391, 562, 570, 837, 846
Mph1103I	ATGCAT	1 cut(s)	626
MseI	TTAA	1 cut(s)	449
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	2 cut(s)	32, 203
MspI	CCGG	2 cut(s)	646, 802
MspR9I	CCNGG	1 cut(s)	802
Mva1269I	GAATGC	1 cut(s)	593
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	590, 775
NciI	CCSGG	1 cut(s)	802
NdeII	GATC	6 cut(s)	174, 192, 216, 260, 444, 684
NlaIV	GGNNCC	3 cut(s)	327, 558, 714
NmeAIII	GCCGAG	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	831
NsiI	ATGCAT	1 cut(s)	626
OliI	CACNNNNGTG	1 cut(s)	119
PaeR7I	CTCGAG	1 cut(s)	314
PctI	GAATGC	1 cut(s)	593
PfeI	GAWTC	4 cut(s)	475, 629, 689, 721
PkrI	GCNGC	2 cut(s)	205, 592
PleI	GAGTC	1 cut(s)	724
PpsI	GAGTC	1 cut(s)	724
PspN4I	GGNNCC	3 cut(s)	327, 558, 714
PspPI	GGNCC	1 cut(s)	556
PspXI	VCTCGAGB	1 cut(s)	314
PsuI	RGATCY	4 cut(s)	174, 192, 216, 444
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	2 cut(s)	70, 419
RsaNI	GTAC	2 cut(s)	69, 418
RseI	CAYNNNNRTG	1 cut(s)	119
SacII	CCGCGG	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	2 cut(s)	204, 591
Sau3AI	GATC	6 cut(s)	174, 192, 216, 260, 444, 684
Sau96I	GGNCC	1 cut(s)	556
SchI	GAGTC	1 cut(s)	724
ScrFI	CCNGG	1 cut(s)	802
SduI	GDGCHC	3 cut(s)	131, 328, 466
Sfr274I	CTCGAG	1 cut(s)	314
Sfr303I	CCGCGG	1 cut(s)	204
SgrBI	CCGCGG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	556
SlaI	CTCGAG	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	2 cut(s)	211, 314
SmoI	CTYRAG	2 cut(s)	211, 314
Sse9I	AATT	8 cut(s)	7, 96, 233, 354, 368, 373, 539, 600
SsiI	CCGC	2 cut(s)	201, 203
SspMI	CTAG	3 cut(s)	230, 249, 717
StyD4I	CCNGG	1 cut(s)	800
StyI	CCWWGG	2 cut(s)	716, 760
TaaI	ACNGT	5 cut(s)	73, 271, 352, 422, 831
TaqI	TCGA	5 cut(s)	315, 562, 687, 728, 838
TasI	AATT	8 cut(s)	7, 96, 233, 354, 368, 373, 539, 600
TatI	WGTACW	1 cut(s)	68
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	4 cut(s)	475, 629, 689, 721
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	831
TseI	GCWGC	1 cut(s)	590
Tsp45I	GTSAC	1 cut(s)	831
TspDTI	ATGAA	2 cut(s)	671, 714
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	556
XapI	RAATTY	2 cut(s)	373, 600
XhoI	CTCGAG	1 cut(s)	314
XmaJI	CCTAGG	1 cut(s)	716
XspI	CTAG	3 cut(s)	230, 249, 717
Zsp2I	ATGCAT	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.