Rh6AG255300

Phototropin-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
N/A
Physical Location & Seq
Reverse (-)
44555015 .. 44558516
3502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG255300.1

Sequence Viewer

Length: 885 bp
ATGAAGGCAATGGAGAAGTCAATAATGTTGAATCGTAACAAGGTTCACCGAGCATGCGCTGAACGGGAAATAATTTCACAACTGGATCATCCATTTCTTCCTACGCTATACACTTCATTTGAGACTTCTACACACGTTTGTTTGATAACAGACTTTTGCTCAGGCGGAGAGTTATTTGCTTTGCTTGATAAGCAGCCTATGAAATTCTTCAAGGAGGACTCTGCTAGGTTCTATGCTGCAGAGGTTGTCATTGCCTTGGAATATCTTCACTGTCTAGGTATAATTTATCGCGACCTTAAGCCTGAAAATATTTTACTCCAGAAGGATGGACATATTGTCTTAACAGACTTTGATTTATCATTTATGGCCTCCTGTAAACCACAGATTATAAGGCATCAATCACCTAAGAAGAGAAGGAGATCTAGTAGTCAACCACCACCAACATTTGTTGCAGAACCAGTTAATCAATCAAATTCCTTCGTTGGAACCGAAGAGTACATTGCTCCTGAAATTGTTACCGGTACAGGCCACAGCAGTGCTATTGATTGGTGGGCTCTTGGTATTTTGTTGTATGAGATGCTATATGGCCGCACCCCTTTCAGGGGGAAAAACAGACAAAGAACATTCACCAACATTTTGCAAAAAGATCTGACCTTTCCAAGTAGCATTCCGGTGAGCCTTGCAGCACGGCAGTTGATCAATGCGTTGTTGCAAAGAGACCCTGCCACACGTTTAGGATCCACTACTGGTGCAAACGAAATCAAACAACATCCTTTTTTCCGTGGAATTAGTTGGCCTTTGATCCGTTGCATGAGCCCTCCACCACGACGGGGTTCTTGTAAATTCAATGGATATGGATATTTTCTAAAGAACCAATTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010033 GO:0010118 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0012505 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

294

Amino Acids

33.46

Weight (kDa)

9.22

Isoelectric Point (pI)

59.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 260 1.1e-55 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 12 - 123 2.1e-14 Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr PF07714 165 - 244 2.9e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 389
AccII CGCG 1 cut(s) 291
AciI CCGC 2 cut(s) 165, 589
AclWI GGATC 4 cut(s) 93, 732, 745, 796
AcoI YGGCCR 1 cut(s) 586
AcsI RAATTY 3 cut(s) 203, 472, 842
AfaI GTAC 2 cut(s) 497, 523
AfiI CCNNNNNNNGG 4 cut(s) 600, 601, 602, 830
AflII CTTAAG 1 cut(s) 296
AflIII ACRYGT 2 cut(s) 133, 728
AgeI ACCGGT 1 cut(s) 518
AgsI TTSAA 3 cut(s) 31, 211, 847
AhdI GACNNNNNGTC 1 cut(s) 335
AleI CACNNNNGTG 1 cut(s) 534
Alw26I GTCTC 2 cut(s) 116, 711
AlwI GGATC 4 cut(s) 93, 732, 745, 796
AoxI GGCC 4 cut(s) 366, 526, 586, 794
ApeKI GCWGC 3 cut(s) 193, 236, 683
ApoI RAATTY 3 cut(s) 203, 472, 842
AsiGI ACCGGT 1 cut(s) 518
Asp700I GAANNNNTTC 2 cut(s) 206, 264
AspLEI GCGC 1 cut(s) 59
AsuHPI GGTGA 4 cut(s) 38, 393, 619, 685
BamHI GGATCC 1 cut(s) 737
BanII GRGCYC 2 cut(s) 556, 818
BbvI GCAGC 3 cut(s) 205, 223, 695
BccI CCATC 1 cut(s) 320
BceAI ACGGC 1 cut(s) 704
BclI TGATCA 1 cut(s) 696
BcoDI GTCTC 2 cut(s) 116, 711
BfaI CTAG 3 cut(s) 225, 275, 423
BfmI CTRYAG 1 cut(s) 237
BfrI CTTAAG 1 cut(s) 296
BglII AGATCT 2 cut(s) 419, 646
BisI GCNGC 4 cut(s) 194, 237, 589, 684
BlsI GCNGC 4 cut(s) 195, 238, 590, 685
BmeRI GACNNNNNGTC 1 cut(s) 335
BmiI GGNNCC 2 cut(s) 487, 739
BmsI GCATC 2 cut(s) 403, 567
BpmI CTGGAG 1 cut(s) 302
Bpu10I CCTNAGC 1 cut(s) 160
BsaI GGTCTC 1 cut(s) 711
BsaJI CCNNGG 2 cut(s) 255, 781
BsaWI WCCGGW 2 cut(s) 518, 670
BsaXI ACNNNNNCTCC 2 cut(s) 409, 439
Bsc4I CCNNNNNNNGG 4 cut(s) 600, 601, 602, 830
Bse118I RCCGGY 1 cut(s) 518
Bse1I ACTGG 3 cut(s) 87, 458, 751
Bse3DI GCAATG 3 cut(s) 15, 249, 498
BseDI CCNNGG 2 cut(s) 255, 781
BseGI GGATG 3 cut(s) 88, 331, 769
BseLI CCNNNNNNNGG 4 cut(s) 600, 601, 602, 830
BseMI GCAATG 3 cut(s) 15, 249, 498
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 3 cut(s) 87, 458, 751
BseXI GCAGC 3 cut(s) 205, 223, 695
Bsh1236I CGCG 1 cut(s) 291
BshFI GGCC 4 cut(s) 368, 528, 588, 796
BshTI ACCGGT 1 cut(s) 518
BsiSI CCGG 2 cut(s) 519, 671
BslI CCNNNNNNNGG 4 cut(s) 600, 601, 602, 830
BsmAI GTCTC 2 cut(s) 116, 711
BsmI GAATGC 1 cut(s) 666
BsnI GGCC 4 cut(s) 368, 528, 588, 796
Bso31I GGTCTC 1 cut(s) 711
Bsp1286I GDGCHC 2 cut(s) 556, 818
Bsp143I GATC 6 cut(s) 85, 419, 646, 696, 737, 801
Bsp68I TCGCGA 1 cut(s) 291
BspACI CCGC 2 cut(s) 165, 589
BspANI GGCC 4 cut(s) 368, 528, 588, 796
BspCNI CTCAG 1 cut(s) 173
BspFNI CGCG 1 cut(s) 291
BspLI GGNNCC 2 cut(s) 487, 739
BspMAI CTGCAG 1 cut(s) 241
BspPI GGATC 4 cut(s) 93, 732, 745, 796
BspTI CTTAAG 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 711
BsrDI GCAATG 3 cut(s) 15, 249, 498
BsrFI RCCGGY 1 cut(s) 518
BsrI ACTGG 3 cut(s) 87, 458, 751
BssAI RCCGGY 1 cut(s) 518
BssECI CCNNGG 2 cut(s) 255, 781
BssMI GATC 6 cut(s) 85, 419, 646, 696, 737, 801
BssT1I CCWWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 272
Bst6I CTCTTC 2 cut(s) 404, 486
BstAFI CTTAAG 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 160, 405
BstDSI CCRYGG 1 cut(s) 781
BstF5I GGATG 3 cut(s) 88, 331, 769
BstFNI CGCG 1 cut(s) 291
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 6 cut(s) 88, 422, 649, 699, 740, 804
BstMAI GTCTC 2 cut(s) 116, 711
BstMBI GATC 6 cut(s) 85, 419, 646, 696, 737, 801
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstNSI RCATGY 1 cut(s) 57
BstSFI CTRYAG 1 cut(s) 237
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 3 cut(s) 205, 223, 695
BstX2I RGATCY 3 cut(s) 419, 646, 737
BstXI CCANNNNNNTGG 1 cut(s) 326
BstYI RGATCY 3 cut(s) 419, 646, 737
BsuRI GGCC 4 cut(s) 368, 528, 588, 796
BtgI CCRYGG 1 cut(s) 781
BtsCI GGATG 3 cut(s) 88, 331, 769
BtsI GCAGTG 1 cut(s) 541
BtsIMutI CAGTG 2 cut(s) 268, 541
BtuMI TCGCGA 1 cut(s) 291
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 1 cut(s) 59
Cfr10I RCCGGY 1 cut(s) 518
Csp6I GTAC 2 cut(s) 496, 522
CspAI ACCGGT 1 cut(s) 518
CviAII CATG 2 cut(s) 54, 811
CviJI RGCY 9 cut(s) 196, 301, 368, 528, 554, 588, 678, 796, 816
CviKI_1 RGCY 9 cut(s) 196, 301, 368, 528, 554, 588, 678, 796, 816
CviQI GTAC 2 cut(s) 496, 522
DdeI CTNAG 2 cut(s) 160, 405
DpnI GATC 6 cut(s) 87, 421, 648, 698, 739, 803
DpnII GATC 6 cut(s) 85, 419, 646, 696, 737, 801
DriI GACNNNNNGTC 1 cut(s) 335
EaeI YGGCCR 1 cut(s) 586
Eam1104I CTCTTC 2 cut(s) 404, 486
Eam1105I GACNNNNNGTC 1 cut(s) 335
EarI CTCTTC 2 cut(s) 404, 486
EciI GGCGGA 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 255
Eco24I GRGCYC 2 cut(s) 556, 818
Eco31I GGTCTC 1 cut(s) 711
EcoT14I CCWWGG 1 cut(s) 255
EcoT38I GRGCYC 2 cut(s) 556, 818
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 2 cut(s) 57, 814
FatI CATG 2 cut(s) 53, 810
FbaI TGATCA 1 cut(s) 696
Fnu4HI GCNGC 4 cut(s) 194, 237, 589, 684
FokI GGATG 3 cut(s) 75, 338, 756
FriOI GRGCYC 2 cut(s) 556, 818
Fsp4HI GCNGC 4 cut(s) 194, 237, 589, 684
FspBI CTAG 3 cut(s) 225, 275, 423
GlaI GCGC 1 cut(s) 58
GluI GCNGC 4 cut(s) 194, 237, 589, 684
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 4 cut(s) 368, 528, 588, 796
HapII CCGG 2 cut(s) 519, 671
HhaI GCGC 1 cut(s) 59
Hin1II CATG 2 cut(s) 57, 814
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HincII GTYRAC 1 cut(s) 431
HindII GTYRAC 1 cut(s) 431
HinfI GANTC 2 cut(s) 31, 218
HpaII CCGG 2 cut(s) 519, 671
HphI GGTGA 4 cut(s) 38, 393, 619, 685
Hpy166II GTNNAC 3 cut(s) 46, 377, 431
Hpy188I TCNGA 1 cut(s) 651
Hpy188III TCNNGA 3 cut(s) 290, 319, 506
Hpy8I GTNNAC 3 cut(s) 46, 377, 431
Hpy99I CGWCG 1 cut(s) 831
HpyAV CCTTC 3 cut(s) 316, 408, 487
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 2 cut(s) 135, 730
HpyCH4V TGCA 7 cut(s) 239, 452, 640, 683, 712, 752, 810
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpyF3I CTNAG 2 cut(s) 160, 405
HpySE526I ACGT 2 cut(s) 135, 730
Hsp92II CATG 2 cut(s) 57, 814
HspAI GCGC 1 cut(s) 57
Ksp22I TGATCA 1 cut(s) 696
Kzo9I GATC 6 cut(s) 85, 419, 646, 696, 737, 801
LmnI GCTCC 1 cut(s) 508
Lsp1109I GCAGC 3 cut(s) 205, 223, 695
LweI GCATC 2 cut(s) 403, 567
MaeI CTAG 3 cut(s) 225, 275, 423
MaeII ACGT 2 cut(s) 135, 730
MaeIII GTNAC 2 cut(s) 35, 514
MalI GATC 6 cut(s) 87, 421, 648, 698, 739, 803
MboI GATC 6 cut(s) 85, 419, 646, 696, 737, 801
MboII GAAGA 5 cut(s) 89, 199, 257, 421, 503
MfeI CAATTG 1 cut(s) 875
MflI RGATCY 3 cut(s) 419, 646, 737
MhlI GDGCHC 2 cut(s) 556, 818
MluCI AATT 8 cut(s) 72, 203, 282, 472, 510, 786, 842, 875
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 463
MnlI CCTC 4 cut(s) 208, 235, 379, 828
MroXI GAANNNNTTC 2 cut(s) 206, 264
MseI TTAA 3 cut(s) 297, 341, 462
MslI CAYNNNNRTG 2 cut(s) 534, 671
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 2 cut(s) 519, 671
MunI CAATTG 1 cut(s) 875
Mva1269I GAATGC 1 cut(s) 666
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 190
NdeII GATC 6 cut(s) 85, 419, 646, 696, 737, 801
NlaIII CATG 2 cut(s) 57, 814
NlaIV GGNNCC 2 cut(s) 487, 739
NruI TCGCGA 1 cut(s) 291
NspI RCATGY 1 cut(s) 57
OliI CACNNNNGTG 1 cut(s) 534
PaeI GCATGC 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PctI GAATGC 1 cut(s) 666
PdmI GAANNNNTTC 2 cut(s) 206, 264
PfeI GAWTC 1 cut(s) 31
PinAI ACCGGT 1 cut(s) 518
PkrI GCNGC 4 cut(s) 195, 238, 590, 685
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PsiI TTATAA 1 cut(s) 389
PspN4I GGNNCC 2 cut(s) 487, 739
PstI CTGCAG 1 cut(s) 241
PsuI RGATCY 3 cut(s) 419, 646, 737
RruI TCGCGA 1 cut(s) 291
RsaI GTAC 2 cut(s) 497, 523
RsaNI GTAC 2 cut(s) 496, 522
RseI CAYNNNNRTG 2 cut(s) 534, 671
SaqAI TTAA 3 cut(s) 297, 341, 462
SatI GCNGC 4 cut(s) 194, 237, 589, 684
Sau3AI GATC 6 cut(s) 85, 419, 646, 696, 737, 801
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 2 cut(s) 556, 818
SetI ASST 9 cut(s) 45, 138, 230, 246, 280, 297, 406, 656, 733
SfaNI GCATC 2 cut(s) 403, 567
SfcI CTRYAG 1 cut(s) 237
SmiMI CAYNNNNRTG 2 cut(s) 534, 671
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SphI GCATGC 1 cut(s) 57
Sse9I AATT 8 cut(s) 72, 203, 282, 472, 510, 786, 842, 875
SsiI CCGC 2 cut(s) 165, 589
SspI AATATT 1 cut(s) 310
SspMI CTAG 3 cut(s) 225, 275, 423
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 2 cut(s) 138, 733
TasI AATT 8 cut(s) 72, 203, 282, 472, 510, 786, 842, 875
TatI WGTACW 1 cut(s) 495
TauI GCSGC 1 cut(s) 591
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 3 cut(s) 297, 341, 462
Tru9I TTAA 3 cut(s) 297, 341, 462
TscAI CASTG 2 cut(s) 275, 541
TseI GCWGC 3 cut(s) 193, 236, 683
TspDTI ATGAA 3 cut(s) 17, 105, 215
TspGWI ACGGA 2 cut(s) 770, 794
TspRI CASTG 2 cut(s) 275, 541
Vha464I CTTAAG 1 cut(s) 296
XapI RAATTY 3 cut(s) 203, 472, 842
XceI RCATGY 1 cut(s) 57
XmnI GAANNNNTTC 2 cut(s) 206, 264
XspI CTAG 3 cut(s) 225, 275, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.