Rh6AG255400

Phototropin-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
N/A
Physical Location & Seq
Reverse (-)
44559830 .. 44563973
4144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG255400.1

Sequence Viewer

Length: 1356 bp
ATGGAGAAACCAGAGGCAGCTGGTGGAGATAAGCAGGAATTAGCAGCGCGAAAGAGCAATGATGTTGGAGTACATCCTAGTAGTAAGCTGGAAAGTGGATCATCAAGTACTTCATTTAAGTGGATGGCATTCGACACAGAAGCAGCTGAAGAGTCTAGCAACACTGCTGCTGCTGCTGCTTCTGGTGACGTTGATGGAATTTTAGACTCAAAAATCATAACGGAGAAGGCGAGCATAGTGGCAAGGACAGCAGAATGGGGAGTTGTGGTGAAGCCGGATGATTCTGGTGAAGGAACTTTTAAGGCCATAGGGAGGTCATCAGATGATGGCAACAAAAGCAAAAACACATCAGGGAGATTTGAATCAACAAGGACATCATCAGAGTCAAGTCATGGGTCTGATCAGTTGCCTAATCCAAGGGTGTCTAGTGAGTTGAAGACAGCTTTGGCTACATTGCAGCAGACTTTTGTTGTGTCTGATGCCACAAAGCCTGATTGCCCAATCGTGTATGCCAGCAGTGGCTTCTTTACCATGACTGGTTACTCTTCAAAAGAGGTCATTGGAAGAAACTGTCGCTTTCTTCAGGGACCGGAAACAGACCAGAATGAAGTGGCCAAAATCCGAAACGCCGTCAAAACTGGGTCTAGCTACTGCGGTAGGCTCTTCAACTACAAGAAAGATGGCACTCCTTTTTGGAATCTTCTCACCGTCACCCCAATCAAAGATGACAATGGAAAAACCATCAAGTTTATTGGAATGCAGGTTGAGGTCAGCAAGTTCACAGAAGGGGTGAATGAGAAGGCATTGAGGCCAAATGGGTTGTCCAAGTCACTAATCCGCTATGACGCTCGACAGAAGGAGAAGGCATTAGGCTCCATTGTTGAAGTTGTACAAACTGTGAAACATCCACGTTCTCACATGCAGGATGCTAGCAATGAGAATACTAAAAATCATGAAGAGCCGGATAACATGAACCTTAATTATGTTCTTCCAAAATCTGCTGCAATGAGTACACCTGTTAGAGAGACTCCTCAGGTGGATGTGAAGGGTGATGCAACTCGGGGGAGATTTTCCCAGGATGCAGGCAAAAATCCTAAAAAGTCAGGGCGCAGCCCCTCAATGGGTGATCATGTAGAACCTCTGCGAAATCGCCTGTCAGAGAGAGCAGAGCTAGAAAGTTCTAAAGTGGATGTGGCAATTGATGTGGCAGTTAAACATAGGATCATTCTAAACCTACCAAATGGAGACCAATGTTTGACTGCCACATTATGTGGTTTAAAAGTGGTTCAGCAGATTGTGCTTCACCTAGCATTGTCTTTTCCAAACAGTCGTAAGAATATTATTGAAGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010033 GO:0010118 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0012505 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

451

Amino Acids

48.95

Weight (kDa)

8.12

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_9 PF13426 162 - 258 3.1e-21 PAS domain
PAS_3 PF08447 168 - 252 2.2e-09 PAS fold
PAS PF00989 168 - 253 1.4e-08 PAS fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 751
AccII CGCG 1 cut(s) 49
AciI CCGC 2 cut(s) 654, 838
AclWI GGATC 2 cut(s) 106, 1229
AcoI YGGCCR 1 cut(s) 612
AcsI RAATTY 1 cut(s) 198
AcuI CTGAAG 2 cut(s) 168, 566
AfaI GTAC 4 cut(s) 72, 109, 891, 1012
AfiI CCNNNNNNNGG 3 cut(s) 312, 1120, 1121
AgsI TTSAA 6 cut(s) 362, 436, 549, 667, 884, 1346
AjnI CCWGG 1 cut(s) 1074
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AluBI AGCT 6 cut(s) 20, 88, 146, 443, 648, 1171
AluI AGCT 6 cut(s) 20, 88, 146, 443, 648, 1171
Alw26I GTCTC 2 cut(s) 1019, 1239
AlwI GGATC 2 cut(s) 106, 1229
Ama87I CYCGRG 1 cut(s) 1059
AoxI GGCC 3 cut(s) 303, 612, 809
ApoI RAATTY 1 cut(s) 198
ArsI GACNNNNNNTTYG 2 cut(s) 806, 838
AspLEI GCGC 2 cut(s) 49, 1110
AspS9I GGNCC 1 cut(s) 587
AsuHPI GGTGA 9 cut(s) 197, 280, 299, 697, 703, 802, 1061, 1136, 1295
AsuNHI GCTAGC 1 cut(s) 929
AvaI CYCGRG 1 cut(s) 1059
AvaII GGWCC 1 cut(s) 587
AxyI CCTNAGG 1 cut(s) 1032
BalI TGGCCA 1 cut(s) 614
BbsI GAAGAC 1 cut(s) 443
BccI CCATC 5 cut(s) 118, 188, 320, 674, 749
BceAI ACGGC 1 cut(s) 614
BciT130I CCWGG 1 cut(s) 1076
BclI TGATCA 2 cut(s) 400, 1126
BcoDI GTCTC 2 cut(s) 1019, 1239
BfaI CTAG 7 cut(s) 78, 156, 426, 645, 930, 1172, 1307
BfuAI ACCTGC 1 cut(s) 751
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 1076
Bme18I GGWCC 1 cut(s) 587
BmeT110I CYCGRG 1 cut(s) 1059
BmgT120I GGNCC 1 cut(s) 587
BmiI GGNNCC 2 cut(s) 588, 874
BmrFI CCNGG 1 cut(s) 1076
BmrI ACTGGG 1 cut(s) 648
BmsI GCATC 4 cut(s) 469, 916, 1042, 1069
BmtI GCTAGC 1 cut(s) 933
BmuI ACTGGG 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 443
BsaBI GATNNNNATC 1 cut(s) 361
BsaI GGTCTC 1 cut(s) 1239
BsaJI CCNNGG 2 cut(s) 416, 1074
BsaWI WCCGGW 1 cut(s) 589
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 3 cut(s) 312, 1120, 1121
Bse1I ACTGG 2 cut(s) 541, 643
Bse21I CCTNAGG 1 cut(s) 1032
Bse3DI GCAATG 4 cut(s) 64, 452, 940, 1011
Bse8I GATNNNNATC 1 cut(s) 361
BseBI CCWGG 1 cut(s) 1076
BseDI CCNNGG 2 cut(s) 416, 1074
BseGI GGATG 8 cut(s) 73, 129, 283, 904, 931, 1045, 1084, 1195
BseJI GATNNNNATC 1 cut(s) 361
BseLI CCNNNNNNNGG 3 cut(s) 312, 1120, 1121
BseMI GCAATG 4 cut(s) 64, 452, 940, 1011
BseMII CTCAG 1 cut(s) 1046
BseNI ACTGG 2 cut(s) 541, 643
BseRI GAGGAG 1 cut(s) 1020
Bsh1236I CGCG 1 cut(s) 49
BshFI GGCC 3 cut(s) 305, 614, 811
BsiHKCI CYCGRG 1 cut(s) 1059
BsiSI CCGG 3 cut(s) 275, 590, 962
BslFI GGGAC 1 cut(s) 600
BslI CCNNNNNNNGG 3 cut(s) 312, 1120, 1121
BsmAI GTCTC 2 cut(s) 1019, 1239
BsmFI GGGAC 1 cut(s) 600
BsmI GAATGC 2 cut(s) 128, 762
BsnI GGCC 3 cut(s) 305, 614, 811
Bso31I GGTCTC 1 cut(s) 1239
BsoBI CYCGRG 1 cut(s) 1059
Bsp1407I TGTACA 1 cut(s) 889
Bsp143I GATC 4 cut(s) 98, 400, 1126, 1221
BspACI CCGC 2 cut(s) 654, 838
BspANI GGCC 3 cut(s) 305, 614, 811
BspCNI CTCAG 1 cut(s) 1045
BspFNI CGCG 1 cut(s) 49
BspHI TCATGA 1 cut(s) 952
BspLI GGNNCC 2 cut(s) 588, 874
BspMI ACCTGC 1 cut(s) 751
BspOI GCTAGC 1 cut(s) 933
BspPI GGATC 2 cut(s) 106, 1229
BspQI GCTCTTC 3 cut(s) 668, 951, 1341
BspTNI GGTCTC 1 cut(s) 1239
BsrDI GCAATG 4 cut(s) 64, 452, 940, 1011
BsrGI TGTACA 1 cut(s) 889
BsrI ACTGG 2 cut(s) 541, 643
BssECI CCNNGG 2 cut(s) 416, 1074
BssMI GATC 4 cut(s) 98, 400, 1126, 1221
BssT1I CCWWGG 1 cut(s) 416
Bst2UI CCWGG 1 cut(s) 1076
Bst4CI ACNGT 4 cut(s) 572, 709, 898, 1328
Bst6I CTCTTC 5 cut(s) 144, 550, 668, 951, 1341
BstAPI GCANNNNNTGC 1 cut(s) 1297
BstAUI TGTACA 1 cut(s) 889
BstC8I GCNNGC 4 cut(s) 232, 514, 931, 1084
BstDEI CTNAG 1 cut(s) 1032
BstF5I GGATG 8 cut(s) 73, 129, 283, 904, 931, 1045, 1084, 1195
BstFNI CGCG 1 cut(s) 49
BstHHI GCGC 2 cut(s) 49, 1110
BstKTI GATC 4 cut(s) 101, 403, 1129, 1224
BstMAI GTCTC 2 cut(s) 1019, 1239
BstMBI GATC 4 cut(s) 98, 400, 1126, 1221
BstMWI GCNNNNNNNGC 5 cut(s) 173, 176, 248, 336, 1297
BstNI CCWGG 1 cut(s) 1076
BstNSI RCATGY 1 cut(s) 922
BstSCI CCNGG 1 cut(s) 1074
BstUI CGCG 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 443
Bsu36I CCTNAGG 1 cut(s) 1032
BsuRI GGCC 3 cut(s) 305, 614, 811
BtsCI GGATG 8 cut(s) 73, 129, 283, 904, 931, 1045, 1084, 1195
BtsI GCAGTG 2 cut(s) 162, 523
BtsIMutI CAGTG 2 cut(s) 162, 523
BveI ACCTGC 1 cut(s) 751
Cac8I GCNNGC 4 cut(s) 232, 514, 931, 1084
CciI TCATGA 1 cut(s) 952
CfoI GCGC 2 cut(s) 49, 1110
Cfr13I GGNCC 1 cut(s) 587
CseI GACGC 1 cut(s) 854
Csp6I GTAC 4 cut(s) 71, 108, 890, 1011
CspCI CAANNNNNGTGG 2 cut(s) 1185, 1220
CviAII CATG 6 cut(s) 392, 532, 919, 953, 970, 1130
CviQI GTAC 4 cut(s) 71, 108, 890, 1011
DdeI CTNAG 1 cut(s) 1032
DpnI GATC 4 cut(s) 100, 402, 1128, 1223
DpnII GATC 4 cut(s) 98, 400, 1126, 1221
DraI TTTAAA 1 cut(s) 1278
EaeI YGGCCR 1 cut(s) 612
Eam1104I CTCTTC 5 cut(s) 144, 550, 668, 951, 1341
EarI CTCTTC 5 cut(s) 144, 550, 668, 951, 1341
Eco130I CCWWGG 1 cut(s) 416
Eco31I GGTCTC 1 cut(s) 1239
Eco47I GGWCC 1 cut(s) 587
Eco57I CTGAAG 2 cut(s) 168, 566
Eco81I CCTNAGG 1 cut(s) 1032
Eco88I CYCGRG 1 cut(s) 1059
EcoRII CCWGG 1 cut(s) 1074
EcoT14I CCWWGG 1 cut(s) 416
ErhI CCWWGG 1 cut(s) 416
FaeI CATG 6 cut(s) 395, 535, 922, 956, 973, 1133
FaqI GGGAC 1 cut(s) 600
FatI CATG 6 cut(s) 391, 531, 918, 952, 969, 1129
FbaI TGATCA 2 cut(s) 400, 1126
FokI GGATG 8 cut(s) 60, 136, 290, 891, 938, 1052, 1091, 1202
FspBI CTAG 7 cut(s) 78, 156, 426, 645, 930, 1172, 1307
GlaI GCGC 2 cut(s) 48, 1109
HaeIII GGCC 3 cut(s) 305, 614, 811
HapII CCGG 3 cut(s) 275, 590, 962
HgaI GACGC 1 cut(s) 854
HhaI GCGC 2 cut(s) 49, 1110
Hin1II CATG 6 cut(s) 395, 535, 922, 956, 973, 1133
Hin6I GCGC 2 cut(s) 47, 1108
HinP1I GCGC 2 cut(s) 47, 1108
HinfI GANTC 7 cut(s) 152, 206, 281, 362, 383, 697, 1027
HpaII CCGG 3 cut(s) 275, 590, 962
HphI GGTGA 9 cut(s) 197, 280, 299, 697, 703, 802, 1061, 1136, 1295
Hpy166II GTNNAC 2 cut(s) 780, 1013
Hpy188I TCNGA 6 cut(s) 322, 382, 400, 478, 623, 1159
Hpy188III TCNNGA 1 cut(s) 953
Hpy8I GTNNAC 2 cut(s) 780, 1013
HpyAV CCTTC 7 cut(s) 220, 284, 779, 793, 850, 856, 1039
HpyCH4III ACNGT 4 cut(s) 572, 709, 898, 1328
HpyCH4IV ACGT 2 cut(s) 189, 910
HpyCH4V TGCA 6 cut(s) 457, 760, 922, 1004, 1055, 1082
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 176, 248, 336, 1297
HpyF3I CTNAG 1 cut(s) 1032
HpySE526I ACGT 2 cut(s) 189, 910
Hsp92II CATG 6 cut(s) 395, 535, 922, 956, 973, 1133
HspAI GCGC 2 cut(s) 47, 1108
Ksp22I TGATCA 2 cut(s) 400, 1126
Kzo9I GATC 4 cut(s) 98, 400, 1126, 1221
LguI GCTCTTC 3 cut(s) 668, 951, 1341
LmnI GCTCC 1 cut(s) 878
LweI GCATC 4 cut(s) 469, 916, 1042, 1069
MaeI CTAG 7 cut(s) 78, 156, 426, 645, 930, 1172, 1307
MaeII ACGT 2 cut(s) 189, 910
MaeIII GTNAC 4 cut(s) 185, 539, 709, 828
MalI GATC 4 cut(s) 100, 402, 1128, 1223
MboI GATC 4 cut(s) 98, 400, 1126, 1221
MboII GAAGA 9 cut(s) 161, 448, 537, 572, 576, 655, 692, 968, 980
MfeI CAATTG 1 cut(s) 1197
MlsI TGGCCA 1 cut(s) 614
MluCI AATT 4 cut(s) 38, 198, 979, 1197
MluNI TGGCCA 1 cut(s) 614
MlyI GAGTC 4 cut(s) 161, 200, 392, 1021
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 8 cut(s) 7, 306, 547, 760, 801, 1041, 1126, 1149
Mox20I TGGCCA 1 cut(s) 614
MscI TGGCCA 1 cut(s) 614
MseI TTAA 5 cut(s) 117, 300, 978, 1212, 1277
MslI CAYNNNNRTG 1 cut(s) 118
Msp20I TGGCCA 1 cut(s) 614
MspA1I CMGCKG 2 cut(s) 20, 146
MspI CCGG 3 cut(s) 275, 590, 962
MspR9I CCNGG 1 cut(s) 1076
MunI CAATTG 1 cut(s) 1197
Mva1269I GAATGC 2 cut(s) 128, 762
MvaI CCWGG 1 cut(s) 1076
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 5 cut(s) 173, 176, 248, 336, 1297
NdeII GATC 4 cut(s) 98, 400, 1126, 1221
NheI GCTAGC 1 cut(s) 929
NlaIII CATG 6 cut(s) 395, 535, 922, 956, 973, 1133
NlaIV GGNNCC 2 cut(s) 588, 874
NmuCI GTSAC 3 cut(s) 185, 709, 828
NspI RCATGY 1 cut(s) 922
PagI TCATGA 1 cut(s) 952
PciSI GCTCTTC 3 cut(s) 668, 951, 1341
PcsI WCGNNNNNNNCGW 1 cut(s) 227
PctI GAATGC 2 cut(s) 128, 762
PfeI GAWTC 3 cut(s) 281, 362, 697
PleI GAGTC 4 cut(s) 160, 200, 391, 1021
PpsI GAGTC 4 cut(s) 160, 200, 391, 1021
Psp6I CCWGG 1 cut(s) 1074
PspGI CCWGG 1 cut(s) 1074
PspN4I GGNNCC 2 cut(s) 588, 874
PspPI GGNCC 1 cut(s) 587
PvuII CAGCTG 2 cut(s) 20, 146
RsaI GTAC 4 cut(s) 72, 109, 891, 1012
RsaNI GTAC 4 cut(s) 71, 108, 890, 1011
RseI CAYNNNNRTG 1 cut(s) 118
SapI GCTCTTC 3 cut(s) 668, 951, 1341
SaqAI TTAA 5 cut(s) 117, 300, 978, 1212, 1277
Sau3AI GATC 4 cut(s) 98, 400, 1126, 1221
Sau96I GGNCC 1 cut(s) 587
ScaI AGTACT 1 cut(s) 109
SchI GAGTC 4 cut(s) 161, 200, 392, 1021
ScrFI CCNGG 1 cut(s) 1076
SfaNI GCATC 4 cut(s) 469, 916, 1042, 1069
SinI GGWCC 1 cut(s) 587
SmiMI CAYNNNNRTG 1 cut(s) 118
Sse9I AATT 4 cut(s) 38, 198, 979, 1197
SsiI CCGC 2 cut(s) 654, 838
SspI AATATT 1 cut(s) 1339
SspMI CTAG 7 cut(s) 78, 156, 426, 645, 930, 1172, 1307
StyD4I CCNGG 1 cut(s) 1074
StyI CCWWGG 1 cut(s) 416
TaaI ACNGT 4 cut(s) 572, 709, 898, 1328
TaiI ACGT 2 cut(s) 192, 913
TaqI TCGA 2 cut(s) 132, 850
TasI AATT 4 cut(s) 38, 198, 979, 1197
TatI WGTACW 4 cut(s) 70, 107, 889, 1010
TfiI GAWTC 3 cut(s) 281, 362, 697
Tru1I TTAA 5 cut(s) 117, 300, 978, 1212, 1277
Tru9I TTAA 5 cut(s) 117, 300, 978, 1212, 1277
TscAI CASTG 2 cut(s) 169, 523
TseFI GTSAC 3 cut(s) 185, 709, 828
Tsp45I GTSAC 3 cut(s) 185, 709, 828
TspDTI ATGAA 4 cut(s) 102, 621, 969, 986
TspGWI ACGGA 1 cut(s) 236
TspRI CASTG 2 cut(s) 169, 523
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 1 cut(s) 198
XceI RCATGY 1 cut(s) 922
XspI CTAG 7 cut(s) 78, 156, 426, 645, 930, 1172, 1307
ZrmI AGTACT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.