Rh6AG279700

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
N/A
Physical Location & Seq
Reverse (-)
47447307 .. 47448617
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG279700.1

Sequence Viewer

Length: 282 bp
ATGAATCAAAGCAGCAAATACTTGTTTACGAGTATCTTCATTGTGGTTCGTTGGCTGACCACCTTTATGGCCAAGCCTTACTTACAAGCAGGTGCTTATGAAATAGTGGATGACAGCCTAGAGGGAACGTTTGATGTTGAAAGCATGAGAAAGACAGCCCTAGTTGCTGTAAGGTCCGTAGAAAGAGATGCATCAAAAAGACCAACCATAGCAGAGGTTTTGGCTGAGCTGAAAGAAGCCTATATCATTCAGCTTTCATATCTCCAATCTCGCGACATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

93

Amino Acids

10.63

Weight (kDa)

5.36

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 80
Acc36I ACCTGC 1 cut(s) 80
AccII CGCG 1 cut(s) 273
AclI AACGTT 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 69
AgsI TTSAA 1 cut(s) 140
AluBI AGCT 2 cut(s) 229, 253
AluI AGCT 2 cut(s) 229, 253
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 174
AvaII GGWCC 1 cut(s) 174
BalI TGGCCA 1 cut(s) 71
BbvI GCAGC 1 cut(s) 24
BfaI CTAG 2 cut(s) 119, 161
BfuAI ACCTGC 1 cut(s) 80
BisI GCNGC 1 cut(s) 13
BlpI GCTNAGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 174
BmsI GCATC 2 cut(s) 178, 200
Bpu1102I GCTNAGC 1 cut(s) 225
BseGI GGATG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 24
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 1 cut(s) 71
BsnI GGCC 1 cut(s) 71
Bsp1720I GCTNAGC 1 cut(s) 225
Bsp68I TCGCGA 1 cut(s) 273
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 217
BspFNI CGCG 1 cut(s) 273
BspMI ACCTGC 1 cut(s) 80
BstDEI CTNAG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 115
BstFNI CGCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 24
BstXI CCANNNNNNTGG 1 cut(s) 67
BsuRI GGCC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 115
BtuMI TCGCGA 1 cut(s) 273
BveI ACCTGC 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 174
CviAII CATG 1 cut(s) 145
CviJI RGCY 9 cut(s) 55, 71, 76, 117, 158, 224, 229, 239, 253
CviKI_1 RGCY 9 cut(s) 55, 71, 76, 117, 158, 224, 229, 239, 253
DdeI CTNAG 1 cut(s) 225
EaeI YGGCCR 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 193
FaeI CATG 1 cut(s) 148
FaiI YATR 8 cut(s) 68, 99, 146, 209, 243, 259, 278, 280
FalI AAGNNNNNCTT 2 cut(s) 65, 97
FatI CATG 1 cut(s) 144
FauNDI CATATG 1 cut(s) 278
Fnu4HI GCNGC 1 cut(s) 13
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 2 cut(s) 119, 161
GluI GCNGC 1 cut(s) 13
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 1 cut(s) 148
HinfI GANTC 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 27
Hpy188III TCNNGA 1 cut(s) 272
Hpy8I GTNNAC 1 cut(s) 27
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 128
Hsp92II CATG 1 cut(s) 148
LpnPI CCDG 1 cut(s) 75
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 2 cut(s) 178, 200
MaeI CTAG 2 cut(s) 119, 161
MaeII ACGT 1 cut(s) 128
MboII GAAGA 1 cut(s) 28
MlsI TGGCCA 1 cut(s) 71
MluNI TGGCCA 1 cut(s) 71
MnlI CCTC 2 cut(s) 115, 208
Mox20I TGGCCA 1 cut(s) 71
Mph1103I ATGCAT 1 cut(s) 193
MscI TGGCCA 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 71
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeI CATATG 1 cut(s) 278
NlaIII CATG 1 cut(s) 148
NruI TCGCGA 1 cut(s) 273
NsiI ATGCAT 1 cut(s) 193
PaqCI CACCTGC 1 cut(s) 80
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 14
Psp1406I AACGTT 1 cut(s) 128
PspPI GGNCC 1 cut(s) 174
RruI TCGCGA 1 cut(s) 273
RseI CAYNNNNRTG 1 cut(s) 65
SatI GCNGC 1 cut(s) 13
Sau96I GGNCC 1 cut(s) 174
SetI ASST 7 cut(s) 65, 94, 131, 176, 219, 231, 255
SfaNI GCATC 2 cut(s) 178, 200
SgeI CNNG 8 cut(s) 34, 42, 85, 98, 102, 131, 157, 173
SinI GGWCC 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 65
SspMI CTAG 2 cut(s) 119, 161
TaiI ACGT 1 cut(s) 131
TfiI GAWTC 1 cut(s) 4
TseI GCWGC 1 cut(s) 12
TspDTI ATGAA 4 cut(s) 17, 28, 114, 246
TspGWI ACGGA 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 174
XspI CTAG 2 cut(s) 119, 161
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.