Rh6AG284200

Kinase-like protein TMKL1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
N/A
Physical Location & Seq
Reverse (-)
47998030 .. 48001633
3604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG284200.1

Sequence Viewer

Length: 1596 bp
ATGGAGATTTTGAAACCCTTGTTTTGCTTTCTGCTCTACTTCATTCTATGCTTCAATGTCTTACCCACTTGGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGATGTTGAGCTTCTGTTGGGAAACATCAAGGCTTCACTGCAAGGTAACGCTCAGAACTTGTTGTTAACTTCATGGAACACTTCTCTGCCTCTTTGCCAATGGAGAGGCCTGAAATGGGTTTTCTCCAATGGCTCTCCTTTGCTTTGCAATGACATGTCCTCACCCCATTGGACCAATCTTTCTCTCTCCAGAGACCCAAGTCTTCACCTTTTCTCTCTTCAGCTCCCCTCTGCTAATCTCTCGGGTTCAATACCCAGAGAGATAGGGGAGTTTTCTATGCTCAGAAGCTTGTACCTTAGTGTTAACTCACTGAGTGGGACCATCCCACTTGAGCTTGGCTACAGCTCTTCACTTTCTGAAATTGATTTGGGCAACAATTTGTTCACTGGGGCTTTAGCTCCGTCTGTGTGGAACTTGTGTGAGAATCTTGTCTCGCTTAGGCTTCATGGTAATTCGCTATCTGGGCCTGTTCCTGAACCTGCATTGCCCAATTCTACCTGCAAAAATTTGCAGCTACTGGATTTGGGTGACAACAAATTTTCAGGGAACTTCCCTGAGTTTGTGACCCAGTTTGGTGGGCTGAAGGAGCTTGATCTTGGGAAAAACATGATTTCGGGTCCCGTTCCGGTGAGTTTAGCTCAGCTGGAACTTGACAAGTTGAACCTTTCACACAATAACTTTAGTGGGGTGTTGCCAGCTTTTGGTGGATCAAAGTTTGGTGTGGAGTCTTTTGAGGGGAACAACCCTGGACTTTGTGGGGCGCCCTTGAGAAGTTGTAGTGGAAGCTCTGGGTTGAGCCCTGGAGCAATTGCTGGTATTGTCATTGGTTTGATGGCTGGGACTGTGGTTTTGGCTTCACTGTGTATTGGGTATGTGCAACACAAGAAGAAAAACAGCAGCGCAGAGAGTGACTACGAGTTGGAGGAAGGAGACGATGAAGAAAATAGGGGTCTTGGTGATGCAGGTGGTGATCAGGGAAGGCTTATATTGTTCCAGGGAGGTGAGCATTTGACATTAGACGATGTGTTGAATGCAACAGGACAAGTGTTGGAGAAGACCAGCTATGGGACTGTTTATAAGGCAAAGCTTGCTGATGGGGGCACCATTACTTTAAGATTGTTGAGGGAAGGTAGTTGCAAAGACGGGAGCTCTTGTGTGCCTGTAATAAAGCAATTGGGCCACATTCGCCATGAGAATTTGATTCCATTGAGAGCTTTCTATCAGGGGAAGCGAGGGGAGAAGCTTCTGATATATGACCATCTTCCTCTCAAAAGCCTTCATGATCTTTTACATGGTATGGATATCTTTCACTATTCTTTGTACTTGGTTCTATGCCTGTATAGTATAGTTTGTGGTCTTTCCATATTGAGAATTAGCTTTATGACCAAATACTTCCAATTTTATGTTAGCTTTGTACTTCCAATTATAATTGTTTGGCCCCTTGTGATTGTTGGAAAATTTAAAGACATCAACTATATTGTAATTATATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

531

Amino Acids

57.72

Weight (kDa)

5.86

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 203 - 261 1.4e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1179, 1529
AarI CACCTGC 1 cut(s) 1055
Acc36I ACCTGC 3 cut(s) 589, 608, 1055
AccB1I GGYRCC 2 cut(s) 862, 1202
AccB7I CCANNNNNTGG 1 cut(s) 803
AclWI GGATC 1 cut(s) 817
AcsI RAATTY 4 cut(s) 607, 638, 1297, 1559
AcuI CTGAAG 3 cut(s) 84, 305, 704
AcyI GRCGYC 1 cut(s) 863
AdeI CACNNNGTG 1 cut(s) 416
AfaI GTAC 3 cut(s) 395, 1424, 1518
AfiI CCNNNNNNNGG 3 cut(s) 217, 803, 1167
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 5 cut(s) 13, 55, 351, 763, 1132
AjnI CCWGG 3 cut(s) 847, 901, 1095
Alw21I GWGCWC 1 cut(s) 1253
Alw26I GTCTC 3 cut(s) 288, 538, 1026
AlwI GGATC 1 cut(s) 817
AlwNI CAGNNNCTG 1 cut(s) 619
Ama87I CYCGRG 1 cut(s) 343
AoxI GGCC 4 cut(s) 208, 566, 1279, 1538
ApeKI GCWGC 2 cut(s) 613, 999
ApoI RAATTY 4 cut(s) 607, 638, 1297, 1559
ArsI GACNNNNNNTTYG 2 cut(s) 934, 966
AspLEI GCGC 2 cut(s) 865, 1004
AspS9I GGNCC 6 cut(s) 273, 420, 566, 719, 1279, 1539
AsuHPI GGTGA 7 cut(s) 255, 299, 641, 742, 1070, 1082, 1115
AvaI CYCGRG 1 cut(s) 343
AvaII GGWCC 3 cut(s) 273, 420, 719
BaeGI GKGCMC 1 cut(s) 1205
BanI GGYRCC 2 cut(s) 862, 1202
BanII GRGCYC 2 cut(s) 902, 1253
BbsI GAAGAC 3 cut(s) 66, 296, 1163
Bbv12I GWGCWC 1 cut(s) 1253
BbvI GCAGC 2 cut(s) 625, 1011
BccI CCATC 4 cut(s) 431, 928, 1190, 1368
BciT130I CCWGG 3 cut(s) 849, 903, 1097
BclI TGATCA 1 cut(s) 1072
BcoDI GTCTC 3 cut(s) 288, 538, 1026
BfmI CTRYAG 1 cut(s) 442
BfoI RGCGCY 1 cut(s) 866
BfuAI ACCTGC 3 cut(s) 589, 608, 1055
BisI GCNGC 2 cut(s) 614, 1000
BlpI GCTNAGC 1 cut(s) 741
BlsI GCNGC 2 cut(s) 615, 1001
Bme1390I CCNGG 3 cut(s) 849, 903, 1097
Bme18I GGWCC 3 cut(s) 273, 420, 719
BmeT110I CYCGRG 1 cut(s) 343
BmgT120I GGNCC 6 cut(s) 273, 420, 566, 719, 1279, 1539
BmiI GGNNCC 6 cut(s) 421, 720, 721, 864, 1204, 1541
BmrFI CCNGG 3 cut(s) 849, 903, 1097
BmrI ACTGGG 2 cut(s) 498, 664
BmsI GCATC 1 cut(s) 1051
BmuI ACTGGG 2 cut(s) 498, 664
BoxI GACNNNNGTC 1 cut(s) 300
BpiI GAAGAC 3 cut(s) 66, 296, 1163
BplI GAGNNNNNCTC 2 cut(s) 724, 756
BpmI CTGGAG 2 cut(s) 274, 924
Bpu10I CCTNAGC 1 cut(s) 539
Bpu1102I GCTNAGC 1 cut(s) 741
BpuEI CTTGAG 2 cut(s) 452, 889
BsaHI GRCGYC 1 cut(s) 863
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 3 cut(s) 847, 901, 1096
BsaWI WCCGGW 1 cut(s) 727
BsaXI ACNNNNNCTCC 2 cut(s) 1240, 1270
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 803, 1167
Bse1I ACTGG 3 cut(s) 493, 624, 670
Bse3DI GCAATG 2 cut(s) 256, 584
BseBI CCWGG 3 cut(s) 849, 903, 1097
BseDI CCNNGG 3 cut(s) 847, 901, 1096
BseGI GGATG 1 cut(s) 423
BseLI CCNNNNNNNGG 3 cut(s) 217, 803, 1167
BseMI GCAATG 2 cut(s) 256, 584
BseMII CTCAG 5 cut(s) 167, 397, 404, 648, 755
BseNI ACTGG 3 cut(s) 493, 624, 670
BseSI GKGCMC 1 cut(s) 1205
BseXI GCAGC 2 cut(s) 625, 1011
BseYI CCCAGC 1 cut(s) 938
BshFI GGCC 4 cut(s) 210, 568, 1281, 1540
BshNI GGYRCC 2 cut(s) 862, 1202
BsiHKAI GWGCWC 1 cut(s) 1253
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 1 cut(s) 728
BslFI GGGAC 4 cut(s) 433, 705, 955, 1183
BslI CCNNNNNNNGG 3 cut(s) 217, 803, 1167
BsmAI GTCTC 3 cut(s) 288, 538, 1026
BsmBI CGTCTC 1 cut(s) 1026
BsmFI GGGAC 4 cut(s) 433, 705, 955, 1183
BsmI GAATGC 1 cut(s) 1138
BsnI GGCC 4 cut(s) 210, 568, 1281, 1540
Bso31I GGTCTC 1 cut(s) 288
BsoBI CYCGRG 1 cut(s) 343
Bsp1286I GDGCHC 3 cut(s) 902, 1205, 1253
Bsp143I GATC 4 cut(s) 694, 809, 1072, 1384
Bsp1720I GCTNAGC 1 cut(s) 741
BspANI GGCC 4 cut(s) 210, 568, 1281, 1540
BspCNI CTCAG 5 cut(s) 166, 396, 405, 649, 754
BspHI TCATGA 1 cut(s) 1381
BspLI GGNNCC 6 cut(s) 421, 720, 721, 864, 1204, 1541
BspMI ACCTGC 3 cut(s) 589, 608, 1055
BspPI GGATC 1 cut(s) 817
BspQI GCTCTTC 1 cut(s) 454
BspT107I GGYRCC 2 cut(s) 862, 1202
BspTNI GGTCTC 1 cut(s) 288
BsrDI GCAATG 2 cut(s) 256, 584
BsrI ACTGG 3 cut(s) 493, 624, 670
BssECI CCNNGG 3 cut(s) 847, 901, 1096
BssMI GATC 4 cut(s) 694, 809, 1072, 1384
BssNI GRCGYC 1 cut(s) 863
Bst2UI CCWGG 3 cut(s) 849, 903, 1097
Bst4CI ACNGT 3 cut(s) 946, 963, 1174
Bst6I CTCTTC 2 cut(s) 324, 454
BstACI GRCGYC 1 cut(s) 863
BstAPI GCANNNNNTGC 1 cut(s) 1190
BstC8I GCNNGC 2 cut(s) 798, 1191
BstDEI CTNAG 7 cut(s) 153, 383, 398, 413, 539, 657, 741
BstF5I GGATG 1 cut(s) 423
BstH2I RGCGCY 1 cut(s) 866
BstHHI GCGC 2 cut(s) 865, 1004
BstKTI GATC 4 cut(s) 697, 812, 1075, 1387
BstMAI GTCTC 3 cut(s) 288, 538, 1026
BstMBI GATC 4 cut(s) 694, 809, 1072, 1384
BstMWI GCNNNNNNNGC 4 cut(s) 565, 688, 1190, 1287
BstNI CCWGG 3 cut(s) 849, 903, 1097
BstNSI RCATGY 1 cut(s) 259
BstPAI GACNNNNGTC 1 cut(s) 300
BstSCI CCNGG 3 cut(s) 847, 901, 1095
BstSFI CTRYAG 1 cut(s) 442
BstSLI GKGCMC 1 cut(s) 1205
BstV1I GCAGC 2 cut(s) 625, 1011
BstV2I GAAGAC 3 cut(s) 66, 296, 1163
BstXI CCANNNNNNTGG 1 cut(s) 677
BsuRI GGCC 4 cut(s) 210, 568, 1281, 1540
BtsCI GGATG 1 cut(s) 423
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 4 cut(s) 137, 410, 486, 959
BveI ACCTGC 3 cut(s) 589, 608, 1055
Cac8I GCNNGC 2 cut(s) 798, 1191
CaiI CAGNNNCTG 1 cut(s) 619
CciI TCATGA 1 cut(s) 1381
CfoI GCGC 2 cut(s) 865, 1004
Cfr13I GGNCC 6 cut(s) 273, 420, 566, 719, 1279, 1539
Csp6I GTAC 3 cut(s) 394, 1423, 1517
CviAII CATG 7 cut(s) 174, 256, 548, 709, 1292, 1382, 1394
CviQI GTAC 3 cut(s) 394, 1423, 1517
DdeI CTNAG 7 cut(s) 153, 383, 398, 413, 539, 657, 741
DinI GGCGCC 1 cut(s) 864
DpnI GATC 4 cut(s) 696, 811, 1074, 1386
DpnII GATC 4 cut(s) 694, 809, 1072, 1384
DraI TTTAAA 1 cut(s) 1564
DraIII CACNNNGTG 1 cut(s) 416
Eam1104I CTCTTC 2 cut(s) 324, 454
EarI CTCTTC 2 cut(s) 324, 454
Ecl136II GAGCTC 1 cut(s) 1251
Eco147I AGGCCT 1 cut(s) 210
Eco24I GRGCYC 2 cut(s) 902, 1253
Eco31I GGTCTC 1 cut(s) 288
Eco32I GATATC 1 cut(s) 1405
Eco47I GGWCC 3 cut(s) 273, 420, 719
Eco53kI GAGCTC 1 cut(s) 1251
Eco57I CTGAAG 3 cut(s) 84, 305, 704
Eco88I CYCGRG 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 1251
EcoO109I RGGNCCY 1 cut(s) 719
EcoRII CCWGG 3 cut(s) 847, 901, 1095
EcoRV GATATC 1 cut(s) 1405
EcoT38I GRGCYC 2 cut(s) 902, 1253
EgeI GGCGCC 1 cut(s) 864
EheI GGCGCC 1 cut(s) 864
Esp3I CGTCTC 1 cut(s) 1026
FaeI CATG 7 cut(s) 177, 259, 551, 712, 1295, 1385, 1397
FaqI GGGAC 4 cut(s) 433, 705, 955, 1183
FatI CATG 7 cut(s) 173, 255, 547, 708, 1291, 1381, 1393
FbaI TGATCA 1 cut(s) 1072
Fnu4HI GCNGC 2 cut(s) 614, 1000
FokI GGATG 1 cut(s) 410
FriOI GRGCYC 2 cut(s) 902, 1253
Fsp4HI GCNGC 2 cut(s) 614, 1000
GlaI GCGC 2 cut(s) 864, 1003
GluI GCNGC 2 cut(s) 614, 1000
GsaI CCCAGC 1 cut(s) 942
GsuI CTGGAG 2 cut(s) 274, 924
HaeII RGCGCY 1 cut(s) 866
HaeIII GGCC 4 cut(s) 210, 568, 1281, 1540
HapII CCGG 1 cut(s) 728
HhaI GCGC 2 cut(s) 865, 1004
Hin1I GRCGYC 1 cut(s) 863
Hin1II CATG 7 cut(s) 177, 259, 551, 712, 1295, 1385, 1397
Hin6I GCGC 2 cut(s) 863, 1002
HinP1I GCGC 2 cut(s) 863, 1002
HincII GTYRAC 2 cut(s) 168, 406
HindII GTYRAC 2 cut(s) 168, 406
HindIII AAGCTT 3 cut(s) 388, 1187, 1343
HinfI GANTC 3 cut(s) 526, 827, 1303
HpaI GTTAAC 2 cut(s) 168, 406
HpaII CCGG 1 cut(s) 728
HphI GGTGA 7 cut(s) 255, 299, 641, 742, 1070, 1082, 1115
Hpy166II GTNNAC 3 cut(s) 168, 406, 486
Hpy188I TCNGA 5 cut(s) 103, 156, 386, 460, 1350
Hpy188III TCNNGA 3 cut(s) 291, 575, 1382
Hpy8I GTNNAC 3 cut(s) 168, 406, 486
HpyAV CCTTC 5 cut(s) 679, 1022, 1074, 1223, 1388
HpyCH4III ACNGT 3 cut(s) 946, 963, 1174
HpyCH4V TGCA 9 cut(s) 142, 249, 584, 603, 613, 979, 1064, 1136, 1239
HpyF10VI GCNNNNNNNGC 4 cut(s) 565, 688, 1190, 1287
HpyF3I CTNAG 7 cut(s) 153, 383, 398, 413, 539, 657, 741
Hsp92I GRCGYC 1 cut(s) 863
Hsp92II CATG 7 cut(s) 177, 259, 551, 712, 1295, 1385, 1397
HspAI GCGC 2 cut(s) 863, 1002
KasI GGCGCC 1 cut(s) 862
KflI GGGWCCC 1 cut(s) 719
Ksp22I TGATCA 1 cut(s) 1072
KspAI GTTAAC 2 cut(s) 168, 406
Kzo9I GATC 4 cut(s) 694, 809, 1072, 1384
LguI GCTCTTC 1 cut(s) 454
LmnI GCTCC 5 cut(s) 330, 505, 688, 905, 1248
Lsp1109I GCAGC 2 cut(s) 625, 1011
LweI GCATC 1 cut(s) 1051
MaeIII GTNAC 4 cut(s) 146, 629, 664, 1010
MalI GATC 4 cut(s) 696, 811, 1074, 1386
MboI GATC 4 cut(s) 694, 809, 1072, 1384
MfeI CAATTG 2 cut(s) 909, 1274
MhlI GDGCHC 3 cut(s) 902, 1205, 1253
Mly113I GGCGCC 1 cut(s) 863
MlyI GAGTC 1 cut(s) 836
MmeI TCCRAC 3 cut(s) 1002, 1131, 1534
MseI TTAA 4 cut(s) 167, 405, 1214, 1563
MspA1I CMGCKG 1 cut(s) 745
MspI CCGG 1 cut(s) 728
MspR9I CCNGG 3 cut(s) 849, 903, 1097
MunI CAATTG 2 cut(s) 909, 1274
Mva1269I GAATGC 1 cut(s) 1138
MvaI CCWGG 3 cut(s) 849, 903, 1097
MwoI GCNNNNNNNGC 4 cut(s) 565, 688, 1190, 1287
NarI GGCGCC 1 cut(s) 863
NdeII GATC 4 cut(s) 694, 809, 1072, 1384
NlaIII CATG 7 cut(s) 177, 259, 551, 712, 1295, 1385, 1397
NlaIV GGNNCC 6 cut(s) 421, 720, 721, 864, 1204, 1541
NmuCI GTSAC 3 cut(s) 629, 664, 1010
NspI RCATGY 1 cut(s) 259
PagI TCATGA 1 cut(s) 1381
PaqCI CACCTGC 1 cut(s) 1055
PceI AGGCCT 1 cut(s) 210
PciI ACATGT 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 454
PctI GAATGC 1 cut(s) 1138
PfeI GAWTC 2 cut(s) 526, 1303
PflMI CCANNNNNTGG 1 cut(s) 803
PkrI GCNGC 2 cut(s) 615, 1001
PleI GAGTC 1 cut(s) 835
PluTI GGCGCC 1 cut(s) 866
PpsI GAGTC 1 cut(s) 835
PpuMI RGGWCCY 1 cut(s) 719
PscI ACATGT 1 cut(s) 255
PshAI GACNNNNGTC 1 cut(s) 300
PsiI TTATAA 2 cut(s) 1179, 1529
Psp124BI GAGCTC 1 cut(s) 1253
Psp5II RGGWCCY 1 cut(s) 719
Psp6I CCWGG 3 cut(s) 847, 901, 1095
PspFI CCCAGC 1 cut(s) 938
PspGI CCWGG 3 cut(s) 847, 901, 1095
PspN4I GGNNCC 6 cut(s) 421, 720, 721, 864, 1204, 1541
PspPI GGNCC 6 cut(s) 273, 420, 566, 719, 1279, 1539
PspPPI RGGWCCY 1 cut(s) 719
PstNI CAGNNNCTG 1 cut(s) 619
PvuII CAGCTG 1 cut(s) 745
RsaI GTAC 3 cut(s) 395, 1424, 1518
RsaNI GTAC 3 cut(s) 394, 1423, 1517
SacI GAGCTC 1 cut(s) 1253
SapI GCTCTTC 1 cut(s) 454
SaqAI TTAA 4 cut(s) 167, 405, 1214, 1563
SatI GCNGC 2 cut(s) 614, 1000
Sau3AI GATC 4 cut(s) 694, 809, 1072, 1384
Sau96I GGNCC 6 cut(s) 273, 420, 566, 719, 1279, 1539
SchI GAGTC 1 cut(s) 836
ScrFI CCNGG 3 cut(s) 849, 903, 1097
SduI GDGCHC 3 cut(s) 902, 1205, 1253
SfaNI GCATC 1 cut(s) 1051
SfcI CTRYAG 1 cut(s) 442
SfoI GGCGCC 1 cut(s) 864
SinI GGWCC 3 cut(s) 273, 420, 719
SmlI CTYRAG 2 cut(s) 431, 868
SmoI CTYRAG 2 cut(s) 431, 868
SseBI AGGCCT 1 cut(s) 210
SspDI GGCGCC 1 cut(s) 862
SstI GAGCTC 1 cut(s) 1253
StuI AGGCCT 1 cut(s) 210
StyD4I CCNGG 3 cut(s) 847, 901, 1095
TaaI ACNGT 3 cut(s) 946, 963, 1174
TatI WGTACW 2 cut(s) 1422, 1516
TfiI GAWTC 2 cut(s) 526, 1303
Tru1I TTAA 4 cut(s) 167, 405, 1214, 1563
Tru9I TTAA 4 cut(s) 167, 405, 1214, 1563
TscAI CASTG 4 cut(s) 144, 417, 493, 966
TseFI GTSAC 3 cut(s) 629, 664, 1010
TseI GCWGC 2 cut(s) 613, 999
Tsp45I GTSAC 3 cut(s) 629, 664, 1010
TspDTI ATGAA 5 cut(s) 31, 162, 536, 1053, 1370
TspGWI ACGGA 1 cut(s) 492
TspRI CASTG 4 cut(s) 144, 417, 493, 966
Van91I CCANNNNNTGG 1 cut(s) 803
VpaK11BI GGWCC 3 cut(s) 273, 420, 719
XapI RAATTY 4 cut(s) 607, 638, 1297, 1559
XceI RCATGY 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.