Rh6AG369400

F-box FBD LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
N/A
Physical Location & Seq
Forward (+)
56758423 .. 56759906
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG369400.1

Sequence Viewer

Length: 573 bp
ATGGAGTTGGATAGAATTGGCAACTTACCAAGTGATGTTACAGAAAAGATATTGTCACATTTGCCGATTAGGGATGCTGTGAGGACGAGTGTTTTATCAACTGAGTGGAGGTACAAATCGGCTATGCTACCACGTCTGGTATTTGATGCCAAGTCTATCTCAACTCAGCGCCAAACATTTGCGAATGTTGTTGATCATGACTTGGTACGTTTAAAGTTATATAAATGTTTGCTACAACCTCCGTCCACATTCAAAGGCTTCAAAAGTTTGAGAATCCTAATTTGTATTGAAAATGTAAGCCTGGATCAAGAGATGCTCCAAAATTTCACTTCTTGTTCTCTGCTTGAGAGGTTGACTTTGAAAGACTGTCACGGTTTCCAACAACTCAAGATTGATGCACCAAATCTCCGATTTCTTCTCTTTACAGGTGATGTTGAAGATATTAATATTTTGAATACCGTACCCTACTTCTTGTTGATGCTACGATTTGTTTGCGAGTCCGGAGAAGTGGTCTTGCAGATCTACCAATTCGCTAAAGTCTTTTGCAGACCTTCCTCATATTCAGAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

190

Amino Acids

21.88

Weight (kDa)

7.59

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 8 - 43 2.4e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 68 - 138 7.1e-06 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 500
AclWI GGATC 1 cut(s) 312
AcsI RAATTY 1 cut(s) 322
AfaI GTAC 3 cut(s) 113, 207, 462
AgsI TTSAA 6 cut(s) 253, 262, 290, 361, 437, 454
AjiI CACGTC 1 cut(s) 134
AjnI CCWGG 1 cut(s) 300
AlwI GGATC 1 cut(s) 312
Aor13HI TCCGGA 1 cut(s) 500
ApoI RAATTY 1 cut(s) 322
AseI ATTAAT 1 cut(s) 444
AspLEI GCGC 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 440
BcgI CGANNNNNNTGC 2 cut(s) 474, 508
BciT130I CCWGG 1 cut(s) 302
BclI TGATCA 1 cut(s) 193
BfoI RGCGCY 1 cut(s) 172
BglII AGATCT 1 cut(s) 519
Bme1390I CCNGG 1 cut(s) 302
BmgBI CACGTC 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 5 cut(s) 64, 136, 303, 385, 468
BpuEI CTTGAG 2 cut(s) 365, 371
BsaWI WCCGGW 1 cut(s) 500
BsaXI ACNNNNNCTCC 4 cut(s) 390, 420, 495, 525
BseAI TCCGGA 1 cut(s) 500
BseBI CCWGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 79
BseMII CTCAG 2 cut(s) 93, 179
BsiSI CCGG 1 cut(s) 501
Bsp13I TCCGGA 1 cut(s) 500
Bsp143I GATC 3 cut(s) 193, 304, 519
BspCNI CTCAG 2 cut(s) 94, 178
BspEI TCCGGA 1 cut(s) 500
BspHI TCATGA 1 cut(s) 196
BspPI GGATC 1 cut(s) 312
BssMI GATC 3 cut(s) 193, 304, 519
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 3 cut(s) 368, 374, 460
BstDEI CTNAG 3 cut(s) 102, 165, 570
BstF5I GGATG 1 cut(s) 79
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 3 cut(s) 196, 307, 522
BstMBI GATC 3 cut(s) 193, 304, 519
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 519
BstYI RGATCY 1 cut(s) 519
BtrI CACGTC 1 cut(s) 134
BtsCI GGATG 1 cut(s) 79
CciI TCATGA 1 cut(s) 196
CfoI GCGC 1 cut(s) 171
Csp6I GTAC 3 cut(s) 112, 206, 461
CviAII CATG 1 cut(s) 197
CviJI RGCY 4 cut(s) 122, 258, 300, 569
CviKI_1 RGCY 4 cut(s) 122, 258, 300, 569
CviQI GTAC 3 cut(s) 112, 206, 461
DdeI CTNAG 3 cut(s) 102, 165, 570
DpnI GATC 3 cut(s) 195, 306, 521
DpnII GATC 3 cut(s) 193, 304, 519
DraI TTTAAA 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 300
FaeI CATG 1 cut(s) 200
FaiI YATR 5 cut(s) 125, 198, 220, 222, 559
FatI CATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 193
FokI GGATG 1 cut(s) 86
GlaI GCGC 1 cut(s) 170
HaeII RGCGCY 1 cut(s) 172
HapII CCGG 1 cut(s) 501
HhaI GCGC 1 cut(s) 171
Hin1II CATG 1 cut(s) 200
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HinfI GANTC 2 cut(s) 273, 497
HpaII CCGG 1 cut(s) 501
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 2 cut(s) 246, 354
Hpy188I TCNGA 2 cut(s) 410, 565
Hpy188III TCNNGA 4 cut(s) 197, 308, 388, 501
Hpy8I GTNNAC 2 cut(s) 246, 354
HpyAV CCTTC 1 cut(s) 561
HpyCH4III ACNGT 3 cut(s) 368, 374, 460
HpyCH4IV ACGT 2 cut(s) 133, 208
HpyCH4V TGCA 3 cut(s) 398, 517, 546
HpyF3I CTNAG 3 cut(s) 102, 165, 570
HpySE526I ACGT 2 cut(s) 133, 208
Hsp92II CATG 1 cut(s) 200
HspAI GCGC 1 cut(s) 169
Kpn2I TCCGGA 1 cut(s) 500
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 3 cut(s) 193, 304, 519
LmnI GCTCC 1 cut(s) 321
LpnPI CCDG 5 cut(s) 122, 287, 314, 411, 514
LweI GCATC 5 cut(s) 64, 136, 303, 385, 468
MaeII ACGT 2 cut(s) 133, 208
MaeIII GTNAC 3 cut(s) 37, 54, 368
MalI GATC 3 cut(s) 195, 306, 521
MboI GATC 3 cut(s) 193, 304, 519
MboII GAAGA 2 cut(s) 407, 449
MflI RGATCY 1 cut(s) 519
MluCI AATT 4 cut(s) 15, 279, 322, 527
MlyI GAGTC 1 cut(s) 506
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 6 cut(s) 75, 102, 249, 342, 559, 565
MroI TCCGGA 1 cut(s) 500
MseI TTAA 2 cut(s) 212, 444
MspI CCGG 1 cut(s) 501
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
NdeII GATC 3 cut(s) 193, 304, 519
NlaIII CATG 1 cut(s) 200
NmuCI GTSAC 2 cut(s) 54, 368
PagI TCATGA 1 cut(s) 196
PfeI GAWTC 1 cut(s) 273
PleI GAGTC 1 cut(s) 505
PpsI GAGTC 1 cut(s) 505
PshBI ATTAAT 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PsuI RGATCY 1 cut(s) 519
RsaI GTAC 3 cut(s) 113, 207, 462
RsaNI GTAC 3 cut(s) 112, 206, 461
SaqAI TTAA 2 cut(s) 212, 444
Sau3AI GATC 3 cut(s) 193, 304, 519
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 1 cut(s) 302
SetI ASST 7 cut(s) 113, 136, 211, 241, 353, 430, 553
SfaNI GCATC 5 cut(s) 64, 136, 303, 385, 468
SmlI CTYRAG 2 cut(s) 344, 386
SmoI CTYRAG 2 cut(s) 344, 386
Sse9I AATT 4 cut(s) 15, 279, 322, 527
SspI AATATT 1 cut(s) 448
StyD4I CCNGG 1 cut(s) 300
TaaI ACNGT 3 cut(s) 368, 374, 460
TaiI ACGT 2 cut(s) 136, 211
TasI AATT 4 cut(s) 15, 279, 322, 527
TfiI GAWTC 1 cut(s) 273
Tru1I TTAA 2 cut(s) 212, 444
Tru9I TTAA 2 cut(s) 212, 444
TseFI GTSAC 2 cut(s) 54, 368
Tsp45I GTSAC 2 cut(s) 54, 368
TspGWI ACGGA 1 cut(s) 231
VspI ATTAAT 1 cut(s) 444
XapI RAATTY 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.