Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

58597375 .. 58601094

Gene Structure 3720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG386500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGCTCATTTCTTACTTTTCCTTCCCAGTTACTGCTCTCCACAAGGTAGTAGAACACTGGAACTTGGTAAATCACTTGAATCTTACCATTGACCCCTGCACTGAAAATGCAACATGGGCATCTGGAATTGCGAATCCCCGTGTGGCTTGCGATTGTACAGGCAGCACCTGCCATATTACTCACCTGAAGATATATGCCTTGGACATAATTGGTGATCTACCAGGAGAACTATTTGAGCTAAAGCAGCTAATAGACTTGAATCTTGGTCAGAATGTATTAAGCGGGCGCATTCCTCCTGAAATAGGACTGTTATCCAACATGCAGTATCTTAGCTTAGGCGTAAACAATCTTTCAGGTCCAGTTCCATCAGAGCTTGGCAACTTGGCCAAGTTGGTTGAGCTAAGTTTTAGCTCAAACCAGTTCTCTGGACCATTGCCCTTGGACCTTGGAAAACTGACCTCCTTGCAGCAGTTGTACATAGACAGCAGTGGAGTAACTGGATCAATTCCGCAGGAGCTTTCAAACTTAAAATCCCTTCAAACTTTCTGGGCATCTGATAATCTCTTCACCGGAAAACTCCCACAATTCTTAGGGACTCTTACAGAACTCATAGACTTGCGACTTGAAGGCACGTTGCTTGATGGACCAATTCCAAGCAATTTTGGTGCTCTAACCAAACTAGACATCTTGAGAATTGGTGATCTTAGCAACGAAGATTCTTCTCTTGATTTTTTGGAAAATCTAACAAGTTTGTCCATGCTGTCTTTGAGAAGTTGTCGAGTATCTGGAGAAATTCCTGAACAAATTGGAAAGTTTTCCAAGTTGCAATACCTATATCTTGGAAACAATTACTTGAGTGGAGAACTACCTACAAGTATTCTCGTTCTTGTCGTAGTCTCGGATGCCGGGTCTTCTTCGAAAAGCGAGAGGAAGCGTGTGGGAAGGATTGTGGGAGTGTCATTTGGATGTGCAGCTGTTGTGATCATAATGTCATCAGTGTTCTACCTATGGTGGATTAAAGATGATGCTGAACCCAGACACGTGAGGATACATAGAGAGATGCGCAAGAAACTTGGTTGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA LRR_1 LRR_4 LRR_8 Malectin

Protein Analysis

361

Amino Acids

39.54

Weight (kDa)

5.54

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	54 - 162	3e-08	Leucine-rich repeat region
LRR_14	PF23598	148 - 254	3.8e-09	Leucine-rich repeat region
LRR_14	PF23598	234 - 296	2.5e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	176
Acc16I	TGCGCA	1 cut(s)	1064
Acc36I	ACCTGC	1 cut(s)	176
AciI	CCGC	2 cut(s)	282, 509
AclWI	GGATC	1 cut(s)	508
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	792
AcuI	CTGAAG	1 cut(s)	206
AcvI	CACGTG	1 cut(s)	1042
AfaI	GTAC	2 cut(s)	157, 476
AfiI	CCNNNNNNNGG	1 cut(s)	302
AflIII	ACRYGT	1 cut(s)	1039
AgsI	TTSAA	5 cut(s)	79, 259, 522, 539, 626
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	8 cut(s)	238, 247, 333, 373, 400, 411, 517, 974
AluI	AGCT	8 cut(s)	238, 247, 333, 373, 400, 411, 517, 974
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	1 cut(s)	901
AlwI	GGATC	1 cut(s)	508
AlwNI	CAGNNNCTG	2 cut(s)	32, 168
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	4 cut(s)	162, 244, 466, 971
ApoI	RAATTY	1 cut(s)	792
Asp700I	GAANNNNTTC	1 cut(s)	814
AspLEI	GCGC	2 cut(s)	288, 1065
AspS9I	GGNCC	4 cut(s)	356, 428, 442, 644
AsuC2I	CCSGG	1 cut(s)	907
AsuHPI	GGTGA	4 cut(s)	173, 224, 559, 710
AsuII	TTCGAA	1 cut(s)	917
AvaII	GGWCC	4 cut(s)	356, 428, 442, 644
BalI	TGGCCA	1 cut(s)	386
BbrPI	CACGTG	1 cut(s)	1042
BbsI	GAAGAC	1 cut(s)	903
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	4 cut(s)	174, 256, 478, 983
BccI	CCATC	2 cut(s)	373, 635
BciT130I	CCWGG	1 cut(s)	222
BciVI	GTATCC	1 cut(s)	1041
BclI	TGATCA	1 cut(s)	981
BcnI	CCSGG	1 cut(s)	907
BcoDI	GTCTC	1 cut(s)	901
BfaI	CTAG	1 cut(s)	680
BfuAI	ACCTGC	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	1041
BisI	GCNGC	4 cut(s)	163, 245, 467, 972
BlsI	GCNGC	4 cut(s)	164, 246, 468, 973
Bme1390I	CCNGG	2 cut(s)	222, 907
Bme18I	GGWCC	4 cut(s)	356, 428, 442, 644
BmgT120I	GGNCC	4 cut(s)	356, 428, 442, 644
BmrFI	CCNGG	2 cut(s)	222, 907
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	5 cut(s)	128, 560, 892, 1015, 1050
BmuI	ACTGGG	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	903
BpmI	CTGGAG	1 cut(s)	807
Bpu10I	CCTNAGC	1 cut(s)	334
Bpu14I	TTCGAA	1 cut(s)	917
BpuEI	CTTGAG	2 cut(s)	709, 874
BpuMI	CCSGG	1 cut(s)	907
BsaAI	YACGTR	1 cut(s)	1042
BsaJI	CCNNGG	3 cut(s)	198, 438, 445
BsaWI	WCCGGW	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	5 cut(s)	26, 62, 359, 418, 502
Bse3DI	GCAATG	1 cut(s)	431
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	3 cut(s)	198, 438, 445
BseGI	GGATG	2 cut(s)	907, 971
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMI	GCAATG	1 cut(s)	431
BseNI	ACTGG	5 cut(s)	26, 62, 359, 418, 502
BseXI	GCAGC	4 cut(s)	174, 256, 478, 983
BsgI	GTGCAG	2 cut(s)	82, 990
BshFI	GGCC	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	670
BsiSI	CCGG	2 cut(s)	570, 906
BslFI	GGGAC	1 cut(s)	607
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	901
BsmFI	GGGAC	1 cut(s)	607
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	386
Bsp119I	TTCGAA	1 cut(s)	917
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp1407I	TGTACA	2 cut(s)	155, 474
Bsp143I	GATC	4 cut(s)	214, 500, 700, 981
BspACI	CCGC	2 cut(s)	282, 509
BspANI	GGCC	1 cut(s)	386
BspMI	ACCTGC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	508
BspT104I	TTCGAA	1 cut(s)	917
BsrDI	GCAATG	1 cut(s)	431
BsrGI	TGTACA	2 cut(s)	155, 474
BsrI	ACTGG	5 cut(s)	26, 62, 359, 418, 502
BssECI	CCNNGG	3 cut(s)	198, 438, 445
BssMI	GATC	4 cut(s)	214, 500, 700, 981
BssT1I	CCWWGG	3 cut(s)	198, 438, 445
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	309
Bst6I	CTCTTC	1 cut(s)	569
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstAUI	TGTACA	2 cut(s)	155, 474
BstBAI	YACGTR	1 cut(s)	1042
BstBI	TTCGAA	1 cut(s)	917
BstC8I	GCNNGC	2 cut(s)	148, 284
BstDEI	CTNAG	5 cut(s)	329, 334, 401, 589, 704
BstENI	CCTNNNNNAGG	1 cut(s)	300
BstF5I	GGATG	2 cut(s)	907, 971
BstHHI	GCGC	2 cut(s)	288, 1065
BstKTI	GATC	4 cut(s)	217, 503, 703, 984
BstMAI	GTCTC	1 cut(s)	901
BstMBI	GATC	4 cut(s)	214, 500, 700, 981
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 168, 244
BstNI	CCWGG	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	220, 905
BstV1I	GCAGC	4 cut(s)	174, 256, 478, 983
BstV2I	GAAGAC	1 cut(s)	903
BstXI	CCANNNNNNTGG	1 cut(s)	425
BsuI	GTATCC	1 cut(s)	1041
BsuRI	GGCC	1 cut(s)	386
BtsCI	GGATG	2 cut(s)	907, 971
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	4 cut(s)	55, 99, 493, 1002
BveI	ACCTGC	1 cut(s)	176
Cac8I	GCNNGC	2 cut(s)	148, 284
CaiI	CAGNNNCTG	2 cut(s)	32, 168
CfoI	GCGC	2 cut(s)	288, 1065
Cfr13I	GGNCC	4 cut(s)	356, 428, 442, 644
Csp6I	GTAC	2 cut(s)	156, 475
CviAII	CATG	4 cut(s)	114, 319, 757, 1083
CviQI	GTAC	2 cut(s)	156, 475
DdeI	CTNAG	5 cut(s)	329, 334, 401, 589, 704
DpnI	GATC	4 cut(s)	216, 502, 702, 983
DpnII	GATC	4 cut(s)	214, 500, 700, 981
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Eco130I	CCWWGG	3 cut(s)	198, 438, 445
Eco47I	GGWCC	4 cut(s)	356, 428, 442, 644
Eco57I	CTGAAG	1 cut(s)	206
Eco72I	CACGTG	1 cut(s)	1042
EcoNI	CCTNNNNNAGG	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	220
EcoT14I	CCWWGG	3 cut(s)	198, 438, 445
ErhI	CCWWGG	3 cut(s)	198, 438, 445
FaeI	CATG	4 cut(s)	117, 322, 760, 1086
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	4 cut(s)	113, 318, 756, 1082
FauI	CCCGC	1 cut(s)	275
FbaI	TGATCA	1 cut(s)	981
Fnu4HI	GCNGC	4 cut(s)	163, 245, 467, 972
FokI	GGATG	2 cut(s)	914, 978
Fsp4HI	GCNGC	4 cut(s)	163, 245, 467, 972
FspBI	CTAG	1 cut(s)	680
FspI	TGCGCA	1 cut(s)	1064
GlaI	GCGC	2 cut(s)	287, 1064
GluI	GCNGC	4 cut(s)	163, 245, 467, 972
GsuI	CTGGAG	1 cut(s)	807
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	2 cut(s)	570, 906
HhaI	GCGC	2 cut(s)	288, 1065
Hin1II	CATG	4 cut(s)	117, 322, 760, 1086
Hin6I	GCGC	2 cut(s)	286, 1063
HinP1I	GCGC	2 cut(s)	286, 1063
HinfI	GANTC	5 cut(s)	79, 133, 259, 595, 716
HpaII	CCGG	2 cut(s)	570, 906
HphI	GGTGA	4 cut(s)	173, 224, 559, 710
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	4 cut(s)	270, 370, 556, 901
Hpy188III	TCNNGA	7 cut(s)	123, 296, 426, 688, 725, 786, 797
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	4 cut(s)	31, 545, 620, 936
HpyCH4III	ACNGT	1 cut(s)	309
HpyCH4IV	ACGT	2 cut(s)	632, 1041
HpyCH4V	TGCA	7 cut(s)	99, 110, 322, 466, 826, 971, 1080
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 168, 244
HpyF3I	CTNAG	5 cut(s)	329, 334, 401, 589, 704
HpySE526I	ACGT	2 cut(s)	632, 1041
Hsp92II	CATG	4 cut(s)	117, 322, 760, 1086
HspAI	GCGC	2 cut(s)	286, 1063
Ksp22I	TGATCA	1 cut(s)	981
Kzo9I	GATC	4 cut(s)	214, 500, 700, 981
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	4 cut(s)	174, 256, 478, 983
LweI	GCATC	5 cut(s)	128, 560, 892, 1015, 1050
MaeI	CTAG	1 cut(s)	680
MaeII	ACGT	2 cut(s)	632, 1041
MaeIII	GTNAC	2 cut(s)	28, 493
MalI	GATC	4 cut(s)	216, 502, 702, 983
MboI	GATC	4 cut(s)	214, 500, 700, 981
MboII	GAAGA	6 cut(s)	199, 556, 711, 725, 903, 906
MhlI	GDGCHC	1 cut(s)	670
MlsI	TGGCCA	1 cut(s)	386
MluNI	TGGCCA	1 cut(s)	386
MlyI	GAGTC	1 cut(s)	589
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	4 cut(s)	303, 469, 921, 1038
Mox20I	TGGCCA	1 cut(s)	386
MroXI	GAANNNNTTC	1 cut(s)	814
MscI	TGGCCA	1 cut(s)	386
MseI	TTAA	3 cut(s)	278, 527, 1017
MslI	CAYNNNNRTG	1 cut(s)	964
Msp20I	TGGCCA	1 cut(s)	386
MspA1I	CMGCKG	1 cut(s)	974
MspI	CCGG	2 cut(s)	570, 906
MspR9I	CCNGG	2 cut(s)	222, 907
Mva1269I	GAATGC	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	116, 168, 244
NciI	CCSGG	1 cut(s)	907
NdeII	GATC	4 cut(s)	214, 500, 700, 981
NlaIII	CATG	4 cut(s)	117, 322, 760, 1086
NsbI	TGCGCA	1 cut(s)	1064
NspI	RCATGY	1 cut(s)	322
NspV	TTCGAA	1 cut(s)	917
PaqCI	CACCTGC	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	888
PctI	GAATGC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	814
PfeI	GAWTC	4 cut(s)	79, 133, 259, 716
PkrI	GCNGC	4 cut(s)	164, 246, 468, 973
PleI	GAGTC	1 cut(s)	589
PmaCI	CACGTG	1 cut(s)	1042
PmlI	CACGTG	1 cut(s)	1042
PpsI	GAGTC	1 cut(s)	589
Ppu21I	YACGTR	1 cut(s)	1042
Psp6I	CCWGG	1 cut(s)	220
PspCI	CACGTG	1 cut(s)	1042
PspGI	CCWGG	1 cut(s)	220
PspPI	GGNCC	4 cut(s)	356, 428, 442, 644
PstNI	CAGNNNCTG	2 cut(s)	32, 168
PvuII	CAGCTG	1 cut(s)	974
RsaI	GTAC	2 cut(s)	157, 476
RsaNI	GTAC	2 cut(s)	156, 475
RseI	CAYNNNNRTG	1 cut(s)	964
SaqAI	TTAA	3 cut(s)	278, 527, 1017
SatI	GCNGC	4 cut(s)	163, 245, 467, 972
Sau3AI	GATC	4 cut(s)	214, 500, 700, 981
Sau96I	GGNCC	4 cut(s)	356, 428, 442, 644
SchI	GAGTC	1 cut(s)	589
ScrFI	CCNGG	2 cut(s)	222, 907
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	5 cut(s)	128, 560, 892, 1015, 1050
SfuI	TTCGAA	1 cut(s)	917
SinI	GGWCC	4 cut(s)	356, 428, 442, 644
SmiMI	CAYNNNNRTG	1 cut(s)	964
SmlI	CTYRAG	2 cut(s)	688, 853
SmoI	CTYRAG	2 cut(s)	688, 853
SsiI	CCGC	2 cut(s)	282, 509
SspMI	CTAG	1 cut(s)	680
StyD4I	CCNGG	2 cut(s)	220, 905
StyI	CCWWGG	3 cut(s)	198, 438, 445
TaaI	ACNGT	1 cut(s)	309
TaiI	ACGT	2 cut(s)	635, 1044
TaqI	TCGA	2 cut(s)	778, 917
TatI	WGTACW	2 cut(s)	155, 474
TfiI	GAWTC	4 cut(s)	79, 133, 259, 716
Tru1I	TTAA	3 cut(s)	278, 527, 1017
Tru9I	TTAA	3 cut(s)	278, 527, 1017
TscAI	CASTG	4 cut(s)	62, 106, 493, 1002
TseI	GCWGC	4 cut(s)	162, 244, 466, 971
TspRI	CASTG	4 cut(s)	62, 106, 493, 1002
VpaK11BI	GGWCC	4 cut(s)	356, 428, 442, 644
XagI	CCTNNNNNAGG	1 cut(s)	300
XapI	RAATTY	1 cut(s)	792
XceI	RCATGY	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	814
XspI	CTAG	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.