Rh6AG391900

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
N/A
Physical Location & Seq
Reverse (-)
59040094 .. 59064242
24149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG391900.1

Sequence Viewer

Length: 498 bp
ATGTGTGAGGATGGTGATAGCTTTTCACAGGTTAAGGGATCACTGCCATCTACATTTAACATTGGTGCCATTAATACGGGGCCTAGTGGTTGTCAAACATTGTGTGAGAGCAATTGTTCTTGCACTGCATTTGCTTCACTTCAGAATGACCAAGAATGCCAACTTTATTATGGGAGTAAGCAGGATCTATTGAAGACCATAGTAAAAGGGCCAGGGATTATTTACATCCGCGGTACTGCTGCTACAAATGGAAGAGGGTCTGAAAGAAATACTTTCCATGGAAATTTTCAAGGCAATGATGATCCAAAACAAGAAATATTATATACAACTTACCAACAAAATGCTGGCATTGTCTTCACTATTCAGGTGGTAAGAAGTGGAAACTCGGGTAAAGAGTTAGCTTCAGAAGGATCGATTGTGATTTACAGTTTTGTTCATATGACGATCTTCGACGATAGCCAGATTCTTTGTACCCAATACATCACCATTACGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

165

Amino Acids

17.91

Weight (kDa)

4.85

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 2 - 56 2.1e-06 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AccII CGCG 1 cut(s) 231
AciI CCGC 2 cut(s) 229, 231
AclWI GGATC 4 cut(s) 46, 192, 296, 418
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 2 cut(s) 125, 387
AfaI GTAC 2 cut(s) 235, 472
AgsI TTSAA 2 cut(s) 193, 290
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 2 cut(s) 21, 401
AluI AGCT 2 cut(s) 21, 401
AlwI GGATC 4 cut(s) 46, 192, 296, 418
Ama87I CYCGRG 1 cut(s) 385
AoxI GGCC 2 cut(s) 80, 209
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 283
AseI ATTAAT 1 cut(s) 72
AspS9I GGNCC 2 cut(s) 80, 209
AsuHPI GGTGA 2 cut(s) 26, 475
AvaI CYCGRG 1 cut(s) 385
BanI GGYRCC 1 cut(s) 65
BbsI GAAGAC 2 cut(s) 200, 346
BbvI GCAGC 1 cut(s) 226
BccI CCATC 2 cut(s) 5, 55
BciT130I CCWGG 1 cut(s) 213
BfaI CTAG 2 cut(s) 84, 496
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 213
BmeT110I CYCGRG 1 cut(s) 385
BmgT120I GGNCC 2 cut(s) 80, 209
BmiI GGNNCC 2 cut(s) 67, 81
BmrFI CCNGG 1 cut(s) 213
BpiI GAAGAC 2 cut(s) 200, 346
Bsa29I ATCGAT 1 cut(s) 413
BsaJI CCNNGG 3 cut(s) 212, 229, 277
Bse3DI GCAATG 1 cut(s) 301
BseBI CCWGG 1 cut(s) 213
BseCI ATCGAT 1 cut(s) 413
BseDI CCNNGG 3 cut(s) 212, 229, 277
BseGI GGATG 2 cut(s) 16, 225
BseMI GCAATG 1 cut(s) 301
BseXI GCAGC 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 2 cut(s) 82, 211
BshNI GGYRCC 1 cut(s) 65
BshVI ATCGAT 1 cut(s) 413
BsiHKCI CYCGRG 1 cut(s) 385
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 2 cut(s) 82, 211
BsoBI CYCGRG 1 cut(s) 385
Bsp143I GATC 5 cut(s) 38, 184, 301, 410, 444
Bsp19I CCATGG 1 cut(s) 277
BspACI CCGC 2 cut(s) 229, 231
BspANI GGCC 2 cut(s) 82, 211
BspDI ATCGAT 1 cut(s) 413
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 67, 81
BspPI GGATC 4 cut(s) 46, 192, 296, 418
BspT107I GGYRCC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 301
BssECI CCNNGG 3 cut(s) 212, 229, 277
BssMI GATC 5 cut(s) 38, 184, 301, 410, 444
BssT1I CCWWGG 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 428
Bst6I CTCTTC 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 346
BstDSI CCRYGG 2 cut(s) 229, 277
BstF5I GGATG 2 cut(s) 16, 225
BstFNI CGCG 1 cut(s) 231
BstKTI GATC 5 cut(s) 41, 187, 304, 413, 447
BstMBI GATC 5 cut(s) 38, 184, 301, 410, 444
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 226
BstV2I GAAGAC 2 cut(s) 200, 346
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 413
BsuRI GGCC 2 cut(s) 82, 211
BsuTUI ATCGAT 1 cut(s) 413
BtgI CCRYGG 2 cut(s) 229, 277
BtsCI GGATG 2 cut(s) 16, 225
BtsI GCAGTG 2 cut(s) 41, 123
BtsIMutI CAGTG 2 cut(s) 41, 123
Cac8I GCNNGC 1 cut(s) 346
Cfr13I GGNCC 2 cut(s) 80, 209
Cfr42I CCGCGG 1 cut(s) 232
ClaI ATCGAT 1 cut(s) 413
Csp6I GTAC 2 cut(s) 234, 471
CviAII CATG 1 cut(s) 278
CviJI RGCY 5 cut(s) 21, 82, 211, 401, 459
CviKI_1 RGCY 5 cut(s) 21, 82, 211, 401, 459
CviQI GTAC 2 cut(s) 234, 471
DpnI GATC 5 cut(s) 40, 186, 303, 412, 446
DpnII GATC 5 cut(s) 38, 184, 301, 410, 444
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 277
Eco57I CTGAAG 2 cut(s) 125, 387
Eco88I CYCGRG 1 cut(s) 385
EcoO109I RGGNCCY 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 277
FaeI CATG 1 cut(s) 281
FaiI YATR 7 cut(s) 171, 200, 279, 322, 324, 438, 440
FalI AAGNNNNNCTT 2 cut(s) 256, 288
FatI CATG 1 cut(s) 277
FauNDI CATATG 1 cut(s) 438
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 2 cut(s) 23, 212
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 2 cut(s) 84, 496
GluI GCNGC 1 cut(s) 240
HaeIII GGCC 2 cut(s) 82, 211
Hin1II CATG 1 cut(s) 281
HinfI GANTC 1 cut(s) 463
HphI GGTGA 2 cut(s) 26, 475
Hpy188I TCNGA 3 cut(s) 144, 262, 406
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4V TGCA 2 cut(s) 123, 128
Hsp92II CATG 1 cut(s) 281
KspI CCGCGG 1 cut(s) 232
Kzo9I GATC 5 cut(s) 38, 184, 301, 410, 444
LpnPI CCDG 7 cut(s) 14, 167, 198, 225, 330, 350, 473
Lsp1109I GCAGC 1 cut(s) 226
MaeI CTAG 2 cut(s) 84, 496
MalI GATC 5 cut(s) 40, 186, 303, 412, 446
MboI GATC 5 cut(s) 38, 184, 301, 410, 444
MboII GAAGA 4 cut(s) 205, 264, 346, 439
MfeI CAATTG 1 cut(s) 112
MflI RGATCY 1 cut(s) 184
MluCI AATT 2 cut(s) 112, 283
MnlI CCTC 1 cut(s) 248
MseI TTAA 3 cut(s) 33, 57, 72
MspA1I CMGCKG 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 213
MunI CAATTG 1 cut(s) 112
Mva1269I GAATGC 1 cut(s) 161
MvaI CCWGG 1 cut(s) 213
MvnI CGCG 1 cut(s) 231
NcoI CCATGG 1 cut(s) 277
NdeI CATATG 1 cut(s) 438
NdeII GATC 5 cut(s) 38, 184, 301, 410, 444
NlaIII CATG 1 cut(s) 281
NlaIV GGNNCC 2 cut(s) 67, 81
PctI GAATGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 463
PkrI GCNGC 1 cut(s) 241
PshBI ATTAAT 1 cut(s) 72
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 2 cut(s) 67, 81
PspPI GGNCC 2 cut(s) 80, 209
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 2 cut(s) 235, 472
RsaNI GTAC 2 cut(s) 234, 471
SacII CCGCGG 1 cut(s) 232
SaqAI TTAA 3 cut(s) 33, 57, 72
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 5 cut(s) 38, 184, 301, 410, 444
Sau96I GGNCC 2 cut(s) 80, 209
ScrFI CCNGG 1 cut(s) 213
SetI ASST 4 cut(s) 23, 33, 369, 403
Sfr303I CCGCGG 1 cut(s) 232
SgrBI CCGCGG 1 cut(s) 232
Sse9I AATT 2 cut(s) 112, 283
SsiI CCGC 2 cut(s) 229, 231
SspI AATATT 1 cut(s) 318
SspMI CTAG 2 cut(s) 84, 496
StyD4I CCNGG 1 cut(s) 211
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 1 cut(s) 428
TaqI TCGA 2 cut(s) 413, 450
TasI AATT 2 cut(s) 112, 283
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 3 cut(s) 33, 57, 72
Tru9I TTAA 3 cut(s) 33, 57, 72
TscAI CASTG 2 cut(s) 48, 130
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 425
TspRI CASTG 2 cut(s) 48, 130
VspI ATTAAT 1 cut(s) 72
XapI RAATTY 1 cut(s) 283
XcmI CCANNNNNNNNNTGG 2 cut(s) 167, 341
XspI CTAG 2 cut(s) 84, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.