Rh6AG458700

Casein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
N/A
Physical Location & Seq
Forward (+)
64176727 .. 64180754
4028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG458700.1

Sequence Viewer

Length: 768 bp
ATGGAGAGGATTATCGGAGGAAAGTTTAAGCTAGGTCGCAAAATTGGGAGCGGTTCTTTTGGTGAAATATACCTCGATCAGAGTCGTCGGGATGATTTGGAGTCACTTGGCTATGTTCTTCTGTACTTCTTAAGAGGAAGCCTTCCTTGGCAGGGTCTAAAAGCTGCAACGAAGAAGCAAAAATATGATAAGATTTGTGAGAAGAAGTTATCAACTCCCATTGAGGTGCTATGTAAGGCGCATCCTGTGGAGTTTGCATCCTACTTCCACTATTGCCATTCCTTAACATTTGATCAACGTCCGGATTACTCATTCTTGAAGCGTCTGTTTCGTGACTTATTCACCCGCGAAGGATTTGAGTTTGATTATGTATTTGACTGGACAATCCTAAAGTACCAGCAGGCGCAACAGACAAGGGCTCATGGTCAATCAGCTCCAGCTGTAGCGACAAATGGTCAAGTAGTGACTAGCAGTCGAGCAGTGCCTATGGATGTGAGGAATCAGGGAGTTGATGATGTTTCTAGACAAGCTCAGCCTCGAGAACATAAAAGATCAAGTCATCTTGTTCATATTCATAGGCCATTTAGATCATCTGCAGTCCAGAATTTGAGTGCTATTAACTCTATTGAAAAACATAATACGGGCAATGCTCTCAAAAGAAATTTACCAAAACCTGAGGGGCCAGCTGAAATTGCTAATGTAGGTCGCCAACACGGTGCTTCAAGCAGTTGGATGCCATCTCTAAATCGAACTTCTCAAGCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04310 ko04340 ko04341 ko04390 ko04391 ko04392 ko04540 ko04710 ko04711 map04068 map04310 map04340 map04341 map04390 map04391 map04392 map04540 map04710 map04711
Pfam Domains
Protein Families
Pkinase

Protein Analysis

255

Amino Acids

29.0

Weight (kDa)

9.79

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 51
AccII CGCG 1 cut(s) 348
AccIII TCCGGA 1 cut(s) 301
AciI CCGC 2 cut(s) 51, 346
AcsI RAATTY 2 cut(s) 604, 661
AfaI GTAC 2 cut(s) 125, 395
AfiI CCNNNNNNNGG 1 cut(s) 152
AflII CTTAAG 1 cut(s) 130
AgsI TTSAA 3 cut(s) 319, 629, 723
AhdI GACNNNNNGTC 2 cut(s) 453, 471
AjuI GAANNNNNNNTTGG 2 cut(s) 130, 162
AluBI AGCT 6 cut(s) 31, 164, 434, 440, 530, 686
AluI AGCT 6 cut(s) 31, 164, 434, 440, 530, 686
Ama87I CYCGRG 1 cut(s) 537
Aor13HI TCCGGA 1 cut(s) 301
AoxI GGCC 2 cut(s) 578, 680
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 2 cut(s) 604, 661
AspLEI GCGC 2 cut(s) 241, 406
AspS9I GGNCC 1 cut(s) 680
AsuHPI GGTGA 2 cut(s) 74, 334
AvaI CYCGRG 1 cut(s) 537
AxyI CCTNAGG 1 cut(s) 675
BanII GRGCYC 1 cut(s) 421
BbvI GCAGC 1 cut(s) 151
BccI CCATC 1 cut(s) 745
BclI TGATCA 1 cut(s) 292
BfaI CTAG 3 cut(s) 32, 468, 522
BfmI CTRYAG 2 cut(s) 441, 594
BfrI CTTAAG 1 cut(s) 130
BisI GCNGC 1 cut(s) 165
BlpI GCTNAGC 1 cut(s) 531
BlsI GCNGC 1 cut(s) 166
BmeRI GACNNNNNGTC 2 cut(s) 453, 471
BmeT110I CYCGRG 1 cut(s) 537
BmgT120I GGNCC 1 cut(s) 680
BmiI GGNNCC 1 cut(s) 681
BmsI GCATC 3 cut(s) 250, 266, 723
BpmI CTGGAG 1 cut(s) 420
Bpu1102I GCTNAGC 1 cut(s) 531
BpuEI CTTGAG 1 cut(s) 741
BsaJI CCNNGG 1 cut(s) 146
BsaWI WCCGGW 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 383
Bse21I CCTNAGG 1 cut(s) 675
Bse3DI GCAATG 1 cut(s) 652
BseAI TCCGGA 1 cut(s) 301
BseDI CCNNGG 1 cut(s) 146
BseGI GGATG 5 cut(s) 97, 241, 257, 496, 738
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMI GCAATG 1 cut(s) 652
BseMII CTCAG 2 cut(s) 545, 666
BseNI ACTGG 1 cut(s) 383
BseXI GCAGC 1 cut(s) 151
Bsh1236I CGCG 1 cut(s) 348
BshFI GGCC 2 cut(s) 580, 682
BsiHKCI CYCGRG 1 cut(s) 537
BsiSI CCGG 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 152
BsnI GGCC 2 cut(s) 580, 682
BsoBI CYCGRG 1 cut(s) 537
Bsp1286I GDGCHC 1 cut(s) 421
Bsp13I TCCGGA 1 cut(s) 301
Bsp143I GATC 4 cut(s) 76, 292, 551, 587
Bsp1720I GCTNAGC 1 cut(s) 531
BspACI CCGC 2 cut(s) 51, 346
BspANI GGCC 2 cut(s) 580, 682
BspCNI CTCAG 2 cut(s) 544, 667
BspEI TCCGGA 1 cut(s) 301
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 681
BspMAI CTGCAG 1 cut(s) 598
BspTI CTTAAG 1 cut(s) 130
BsrBI CCGCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 652
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 4 cut(s) 76, 292, 551, 587
BssT1I CCWWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 716
BstAFI CTTAAG 1 cut(s) 130
BstC8I GCNNGC 2 cut(s) 402, 684
BstDEI CTNAG 2 cut(s) 531, 675
BstF5I GGATG 5 cut(s) 97, 241, 257, 496, 738
BstFNI CGCG 1 cut(s) 348
BstHHI GCGC 2 cut(s) 241, 406
BstKTI GATC 4 cut(s) 79, 295, 554, 590
BstMBI GATC 4 cut(s) 76, 292, 551, 587
BstMWI GCNNNNNNNGC 1 cut(s) 692
BstSFI CTRYAG 2 cut(s) 441, 594
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 151
Bsu36I CCTNAGG 1 cut(s) 675
BsuRI GGCC 2 cut(s) 580, 682
BtsCI GGATG 5 cut(s) 97, 241, 257, 496, 738
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 1 cut(s) 486
Cac8I GCNNGC 2 cut(s) 402, 684
CfoI GCGC 2 cut(s) 241, 406
Cfr13I GGNCC 1 cut(s) 680
CseI GACGC 1 cut(s) 311
Csp6I GTAC 2 cut(s) 124, 394
CviAII CATG 1 cut(s) 422
CviQI GTAC 2 cut(s) 124, 394
DdeI CTNAG 2 cut(s) 531, 675
DpnI GATC 4 cut(s) 78, 294, 553, 589
DpnII GATC 4 cut(s) 76, 292, 551, 587
DriI GACNNNNNGTC 2 cut(s) 453, 471
Eam1105I GACNNNNNGTC 2 cut(s) 453, 471
Eco130I CCWWGG 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 421
Eco81I CCTNAGG 1 cut(s) 675
Eco88I CYCGRG 1 cut(s) 537
EcoT14I CCWWGG 1 cut(s) 146
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 146
FaeI CATG 1 cut(s) 425
FalI AAGNNNNNCTT 2 cut(s) 130, 162
FatI CATG 1 cut(s) 421
FauI CCCGC 1 cut(s) 353
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 5 cut(s) 104, 228, 244, 503, 745
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 3 cut(s) 32, 468, 522
GlaI GCGC 2 cut(s) 240, 405
GluI GCNGC 1 cut(s) 165
GsuI CTGGAG 1 cut(s) 420
HaeIII GGCC 2 cut(s) 580, 682
HapII CCGG 1 cut(s) 302
HgaI GACGC 1 cut(s) 311
HhaI GCGC 2 cut(s) 241, 406
Hin1II CATG 1 cut(s) 425
Hin6I GCGC 2 cut(s) 239, 404
HinP1I GCGC 2 cut(s) 239, 404
HinfI GANTC 3 cut(s) 82, 101, 499
HpaII CCGG 1 cut(s) 302
HphI GGTGA 2 cut(s) 74, 334
Hpy188I TCNGA 2 cut(s) 17, 81
Hpy188III TCNNGA 7 cut(s) 89, 302, 316, 332, 522, 539, 601
Hpy99I CGWCG 1 cut(s) 90
HpyAV CCTTC 2 cut(s) 152, 344
HpyCH4III ACNGT 1 cut(s) 716
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 3 cut(s) 167, 257, 596
HpyF10VI GCNNNNNNNGC 1 cut(s) 692
HpyF3I CTNAG 2 cut(s) 531, 675
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 1 cut(s) 425
HspAI GCGC 2 cut(s) 239, 404
Kpn2I TCCGGA 1 cut(s) 301
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 4 cut(s) 76, 292, 551, 587
LmnI GCTCC 2 cut(s) 48, 439
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 3 cut(s) 250, 266, 723
MaeI CTAG 3 cut(s) 32, 468, 522
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 3 cut(s) 102, 332, 463
MalI GATC 4 cut(s) 78, 294, 553, 589
MbiI CCGCTC 1 cut(s) 51
MboI GATC 4 cut(s) 76, 292, 551, 587
MboII GAAGA 3 cut(s) 110, 184, 214
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 4 cut(s) 42, 604, 661, 690
MlyI GAGTC 2 cut(s) 91, 110
MmeI TCCRAC 1 cut(s) 710
MnlI CCTC 7 cut(s) 11, 83, 128, 217, 489, 546, 670
MroI TCCGGA 1 cut(s) 301
MseI TTAA 4 cut(s) 27, 131, 284, 618
MslI CAYNNNNRTG 1 cut(s) 224
MspA1I CMGCKG 2 cut(s) 440, 686
MspCI CTTAAG 1 cut(s) 130
MspI CCGG 1 cut(s) 302
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 1 cut(s) 692
NdeII GATC 4 cut(s) 76, 292, 551, 587
NlaIII CATG 1 cut(s) 425
NlaIV GGNNCC 1 cut(s) 681
NmuCI GTSAC 3 cut(s) 102, 332, 463
PaeR7I CTCGAG 1 cut(s) 537
PfeI GAWTC 1 cut(s) 499
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 2 cut(s) 90, 109
PpsI GAGTC 2 cut(s) 90, 109
PspN4I GGNNCC 1 cut(s) 681
PspPI GGNCC 1 cut(s) 680
PstI CTGCAG 1 cut(s) 598
PvuII CAGCTG 2 cut(s) 440, 686
RsaI GTAC 2 cut(s) 125, 395
RsaNI GTAC 2 cut(s) 124, 394
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 4 cut(s) 27, 131, 284, 618
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 4 cut(s) 76, 292, 551, 587
Sau96I GGNCC 1 cut(s) 680
SchI GAGTC 2 cut(s) 91, 110
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 3 cut(s) 250, 266, 723
SfcI CTRYAG 2 cut(s) 441, 594
Sfr274I CTCGAG 1 cut(s) 537
SlaI CTCGAG 1 cut(s) 537
SmiMI CAYNNNNRTG 1 cut(s) 224
SmlI CTYRAG 3 cut(s) 130, 537, 756
SmoI CTYRAG 3 cut(s) 130, 537, 756
Sse9I AATT 4 cut(s) 42, 604, 661, 690
SsiI CCGC 2 cut(s) 51, 346
SspMI CTAG 3 cut(s) 32, 468, 522
StyI CCWWGG 1 cut(s) 146
TaaI ACNGT 1 cut(s) 716
TaiI ACGT 1 cut(s) 301
TaqI TCGA 4 cut(s) 75, 475, 538, 748
TasI AATT 4 cut(s) 42, 604, 661, 690
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 1 cut(s) 499
Tru1I TTAA 4 cut(s) 27, 131, 284, 618
Tru9I TTAA 4 cut(s) 27, 131, 284, 618
TscAI CASTG 1 cut(s) 486
TseFI GTSAC 3 cut(s) 102, 332, 463
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 3 cut(s) 102, 332, 463
TspDTI ATGAA 2 cut(s) 557, 563
TspRI CASTG 1 cut(s) 486
Vha464I CTTAAG 1 cut(s) 130
XapI RAATTY 2 cut(s) 604, 661
XbaI TCTAGA 1 cut(s) 521
XhoI CTCGAG 1 cut(s) 537
XspI CTAG 3 cut(s) 32, 468, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.