Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19491642 .. 19495625

Gene Structure 3984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG125100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGCGCCTTCATCTAATGATTCGTCATCATCGAATTCTAAACAATCCTCATCAACTTCTCCATCATCATCGTCATCTTCGAGCTCAAACTCTACACCATCTAATCAAGGGAATGGTAACTCTGAAGGCAACAATAACAATTCTGGAGGTAATAGCAATAACAATTCAGGAGGAAACAACAACAATTCTAGTGGGAACAACAATGGAAACGACAACTCTAGTGGGAATGGTAACTCTGGAGACAACAATGGGAACAAAGATTCAAGTGGGAAAAACAATTCGAGCGGGAACAGCAATTCTGGGCAGAACAACAACAACAATTCTGGTCAGAACAACAACAACAACAACAACAGTAATTCTGGACAGAATGGCAACAGTAATTCTGGACAGAATGACAACAACAATTCTGGACAGAGCAGCAATTCTGGTCAGAATGGCAACAACAATTCTGGGCAAAATGGCAACAACAATTCTGGGCAAAATGGCAACAGCAACTCTGGACAAAACAACAACAACAACAATGGCAACCAAAATAACAACGGCAACCAGAACAAAAACAACTCTGGACAAAATAATAACAATAACACTGAACAAAACAACAACAACAACAACAACAACAATGGCGGGAATAGTAACTCTCAGTCATCCCAAGGGAATCATCCACCACCACCCAAATCGCCCAGCAATTATTGGCATGCACCTCCACCACCGTCAAAAAAGTCCCCTCCAGCACCACCAGCTCTATCTAATAAAGACAACAAATCATCGTCCAGCTCACCTTCCTCGCCACTCATAATAGGACTTGCAGCCGGAGCAGGGCTGTTGTTTGTCCTGGTTTTGCTCTTTTTGGCATGTTCTAGAAGGAGGAAGAAGCGACAGTCCTCACACCTCATGGATAACCCTGATCCTTATCGTCCTAATGGTCATCCAAAGATTATCCACCGTGACATTAAAGCAGCAAATATTTTAATTGACCATCACTTTGAAGCTAAGGCTAGGCCTTTGCTATTGAAAGCAATAGAGGATGGGAACTACAGTGAGTTAGCTGATCCACGACTAGAAAATAAGTATGATCAGGAAGAGATTGCACGCATGGTTGCATGTGCGTCAACAAGCGTTCGGCACTCTGCAAAAAAGCGACCCAGAATGAGCCAGATTGTACGAGCACTAGAAGGAGATGTGTCGCTAGAGGACTTGCATGAAGGAATAAAACCTAGTCCCAGTGCTTTATTTGGTGGCTCTAATACTAGTTCTGAGTTTGATTCCGACTCATATAATGCTAACATGAAGAATTTTAGAAAGACGACATTGGGGGAAAGCCAAGACTATCCAAGCAGCGAATATGGGAACACCTCTAATAGCGAAGAGATGGTCAAGAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

461

Amino Acids

48.43

Weight (kDa)

8.68

Isoelectric Point (pI)

54.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	285
AciI	CCGC	2 cut(s)	285, 624
AclWI	GGATC	2 cut(s)	899, 1043
AcsI	RAATTY	2 cut(s)	34, 1291
AcuI	CTGAAG	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	1161
AfiI	CCNNNNNNNGG	1 cut(s)	816
AgsI	TTSAA	3 cut(s)	264, 986, 1012
AhlI	ACTAGT	1 cut(s)	1247
AjnI	CCWGG	1 cut(s)	831
AluBI	AGCT	5 cut(s)	84, 740, 774, 989, 1046
AluI	AGCT	5 cut(s)	84, 740, 774, 989, 1046
Alw21I	GWGCWC	2 cut(s)	86, 1168
Alw26I	GTCTC	1 cut(s)	234
AlwI	GGATC	2 cut(s)	899, 1043
AoxI	GGCC	1 cut(s)	998
ApeKI	GCWGC	4 cut(s)	417, 806, 956, 1335
ApoI	RAATTY	2 cut(s)	34, 1291
ArsI	GACNNNNNNTTYG	3 cut(s)	965, 997, 1356
AspLEI	GCGC	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	768
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	86
Bbv12I	GWGCWC	2 cut(s)	86, 1168
BbvI	GCAGC	4 cut(s)	429, 818, 968, 1347
BccI	CCATC	5 cut(s)	70, 106, 984, 1019, 1363
BceAI	ACGGC	1 cut(s)	556
BciT130I	CCWGG	1 cut(s)	833
BclI	TGATCA	1 cut(s)	1072
BcoDI	GTCTC	1 cut(s)	234
BcuI	ACTAGT	1 cut(s)	1247
BfaI	CTAG	9 cut(s)	189, 219, 858, 996, 1058, 1169, 1187, 1215, 1248
BfmI	CTRYAG	1 cut(s)	1033
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	4 cut(s)	418, 807, 957, 1336
BlsI	GCNGC	4 cut(s)	419, 808, 958, 1337
Bme1390I	CCNGG	1 cut(s)	833
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	833
BmrI	ACTGGG	1 cut(s)	1215
BmuI	ACTGGG	1 cut(s)	1215
BpmI	CTGGAG	3 cut(s)	165, 258, 711
Bpu10I	CCTNAGC	1 cut(s)	990
BsaBI	GATNNNNATC	1 cut(s)	909
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	649
Bsc4I	CCNNNNNNNGG	1 cut(s)	816
Bse1I	ACTGG	1 cut(s)	1221
Bse8I	GATNNNNATC	1 cut(s)	909
BseBI	CCWGG	1 cut(s)	833
BseDI	CCNNGG	1 cut(s)	649
BseGI	GGATG	4 cut(s)	644, 658, 925, 1030
BseJI	GATNNNNATC	1 cut(s)	909
BseLI	CCNNNNNNNGG	1 cut(s)	816
BseMII	CTCAG	2 cut(s)	653, 1245
BseNI	ACTGG	1 cut(s)	1221
BseXI	GCAGC	4 cut(s)	429, 818, 968, 1347
BseYI	CCCAGC	1 cut(s)	680
BshFI	GGCC	1 cut(s)	1000
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	2 cut(s)	86, 1168
BsiSI	CCGG	1 cut(s)	810
BslFI	GGGAC	2 cut(s)	706, 1203
BslI	CCNNNNNNNGG	1 cut(s)	816
BsmAI	GTCTC	1 cut(s)	234
BsmFI	GGGAC	2 cut(s)	706, 1203
BsnI	GGCC	1 cut(s)	1000
Bsp1286I	GDGCHC	2 cut(s)	86, 1168
Bsp143I	GATC	3 cut(s)	904, 1048, 1072
BspACI	CCGC	2 cut(s)	285, 624
BspANI	GGCC	1 cut(s)	1000
BspCNI	CTCAG	2 cut(s)	652, 1246
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	899, 1043
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	1221
BssECI	CCNNGG	1 cut(s)	649
BssMI	GATC	3 cut(s)	904, 1048, 1072
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	649
Bst2UI	CCWGG	1 cut(s)	833
Bst4CI	ACNGT	6 cut(s)	353, 377, 711, 879, 944, 1037
Bst6I	CTCTTC	2 cut(s)	1074, 1359
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	696, 1090
BstDEI	CTNAG	3 cut(s)	639, 990, 1254
BstF5I	GGATG	4 cut(s)	644, 658, 925, 1030
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	907, 1051, 1075
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	3 cut(s)	904, 1048, 1072
BstMWI	GCNNNNNNNGC	3 cut(s)	291, 737, 812
BstNI	CCWGG	1 cut(s)	833
BstNSI	RCATGY	3 cut(s)	698, 855, 1104
BstSCI	CCNGG	1 cut(s)	831
BstSFI	CTRYAG	1 cut(s)	1033
BstV1I	GCAGC	4 cut(s)	429, 818, 968, 1347
BsuRI	GGCC	1 cut(s)	1000
BtsCI	GGATG	4 cut(s)	644, 658, 925, 1030
BtsIMutI	CAGTG	3 cut(s)	585, 1042, 1228
Cac8I	GCNNGC	2 cut(s)	696, 1090
CfoI	GCGC	1 cut(s)	7
CseI	GACGC	1 cut(s)	1095
Csp6I	GTAC	1 cut(s)	1160
CspCI	CAANNNNNGTGG	4 cut(s)	172, 202, 207, 237
CviAII	CATG	7 cut(s)	695, 852, 892, 1093, 1101, 1199, 1285
CviQI	GTAC	1 cut(s)	1160
DdeI	CTNAG	3 cut(s)	639, 990, 1254
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	906, 1050, 1074
DpnII	GATC	3 cut(s)	904, 1048, 1072
Eam1104I	CTCTTC	2 cut(s)	1074, 1359
EarI	CTCTTC	2 cut(s)	1074, 1359
Ecl136II	GAGCTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	649
Eco147I	AGGCCT	1 cut(s)	1000
Eco24I	GRGCYC	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	84
EcoRI	GAATTC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	831
EcoT14I	CCWWGG	1 cut(s)	649
EcoT38I	GRGCYC	1 cut(s)	86
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	649
FaeI	CATG	7 cut(s)	698, 855, 895, 1096, 1104, 1202, 1288
FaqI	GGGAC	2 cut(s)	706, 1203
FatI	CATG	7 cut(s)	694, 851, 891, 1092, 1100, 1198, 1284
FauI	CCCGC	2 cut(s)	278, 617
FbaI	TGATCA	1 cut(s)	1072
Fnu4HI	GCNGC	4 cut(s)	418, 807, 957, 1336
FokI	GGATG	4 cut(s)	631, 645, 912, 1037
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	4 cut(s)	418, 807, 957, 1336
FspBI	CTAG	9 cut(s)	189, 219, 858, 996, 1058, 1169, 1187, 1215, 1248
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	418, 807, 957, 1336
GsaI	CCCAGC	1 cut(s)	684
GsuI	CTGGAG	3 cut(s)	165, 258, 711
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	1000
HapII	CCGG	1 cut(s)	810
HgaI	GACGC	1 cut(s)	1095
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	698, 855, 895, 1096, 1104, 1202, 1288
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	1110
HindII	GTYRAC	1 cut(s)	1110
HinfI	GANTC	5 cut(s)	20, 260, 655, 1262, 1268
HpaII	CCGG	1 cut(s)	810
HphI	GGTGA	1 cut(s)	768
Hpy166II	GTNNAC	1 cut(s)	1110
Hpy188I	TCNGA	5 cut(s)	124, 330, 432, 1255, 1267
Hpy8I	GTNNAC	1 cut(s)	1110
HpyAV	CCTTC	6 cut(s)	18, 119, 789, 855, 1166, 1196
HpyCH4III	ACNGT	6 cut(s)	353, 377, 711, 879, 944, 1037
HpyCH4V	TGCA	6 cut(s)	698, 806, 1088, 1100, 1130, 1198
HpyF10VI	GCNNNNNNNGC	3 cut(s)	291, 737, 812
HpyF3I	CTNAG	3 cut(s)	639, 990, 1254
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	698, 855, 895, 1096, 1104, 1202, 1288
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	1072
Kzo9I	GATC	3 cut(s)	904, 1048, 1072
LmnI	GCTCC	1 cut(s)	812
Lsp1109I	GCAGC	4 cut(s)	429, 818, 968, 1347
MaeI	CTAG	9 cut(s)	189, 219, 858, 996, 1058, 1169, 1187, 1215, 1248
MaeIII	GTNAC	4 cut(s)	116, 230, 632, 944
MalI	GATC	3 cut(s)	906, 1050, 1074
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	3 cut(s)	904, 1048, 1072
MboII	GAAGA	5 cut(s)	69, 880, 1091, 1300, 1376
MhlI	GDGCHC	2 cut(s)	86, 1168
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	1262
MmeI	TCCRAC	1 cut(s)	1290
MseI	TTAA	2 cut(s)	951, 968
MspI	CCGG	1 cut(s)	810
MspR9I	CCNGG	1 cut(s)	833
MvaI	CCWGG	1 cut(s)	833
MwoI	GCNNNNNNNGC	3 cut(s)	291, 737, 812
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	3 cut(s)	904, 1048, 1072
NlaIII	CATG	7 cut(s)	698, 855, 895, 1096, 1104, 1202, 1288
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	944
NspI	RCATGY	3 cut(s)	698, 855, 1104
PaeI	GCATGC	1 cut(s)	698
PceI	AGGCCT	1 cut(s)	1000
PcsI	WCGNNNNNNNCGW	2 cut(s)	29, 77
PfeI	GAWTC	4 cut(s)	20, 260, 655, 1262
PkrI	GCNGC	4 cut(s)	419, 808, 958, 1337
PleI	GAGTC	1 cut(s)	1262
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	1262
Psp124BI	GAGCTC	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	831
PspFI	CCCAGC	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	831
PspN4I	GGNNCC	1 cut(s)	6
RsaI	GTAC	1 cut(s)	1161
RsaNI	GTAC	1 cut(s)	1160
SacI	GAGCTC	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	951, 968
SatI	GCNGC	4 cut(s)	418, 807, 957, 1336
Sau3AI	GATC	3 cut(s)	904, 1048, 1072
SchI	GAGTC	1 cut(s)	1262
ScrFI	CCNGG	1 cut(s)	833
SduI	GDGCHC	2 cut(s)	86, 1168
SfcI	CTRYAG	1 cut(s)	1033
SfoI	GGCGCC	1 cut(s)	6
SpeI	ACTAGT	1 cut(s)	1247
SphI	GCATGC	1 cut(s)	698
SseBI	AGGCCT	1 cut(s)	1000
SsiI	CCGC	2 cut(s)	285, 624
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	964
SspMI	CTAG	9 cut(s)	189, 219, 858, 996, 1058, 1169, 1187, 1215, 1248
SstI	GAGCTC	1 cut(s)	86
StuI	AGGCCT	1 cut(s)	1000
StyD4I	CCNGG	1 cut(s)	831
StyI	CCWWGG	1 cut(s)	649
TaaI	ACNGT	6 cut(s)	353, 377, 711, 879, 944, 1037
TaqI	TCGA	3 cut(s)	32, 80, 281
TfiI	GAWTC	4 cut(s)	20, 260, 655, 1262
Tru1I	TTAA	2 cut(s)	951, 968
Tru9I	TTAA	2 cut(s)	951, 968
TscAI	CASTG	3 cut(s)	592, 1042, 1228
TseFI	GTSAC	1 cut(s)	944
TseI	GCWGC	4 cut(s)	417, 806, 956, 1335
Tsp45I	GTSAC	1 cut(s)	944
TspDTI	ATGAA	2 cut(s)	1215, 1301
TspRI	CASTG	3 cut(s)	592, 1042, 1228
XapI	RAATTY	2 cut(s)	34, 1291
XbaI	TCTAGA	1 cut(s)	857
XceI	RCATGY	3 cut(s)	698, 855, 1104
XspI	CTAG	9 cut(s)	189, 219, 858, 996, 1058, 1169, 1187, 1215, 1248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.