Rh6BG135600

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
N/A
Physical Location & Seq
Reverse (-)
21486909 .. 21487414
506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG135600.1

Sequence Viewer

Length: 336 bp
ATGACATTTGGAAGGCAGAGGACTGGGACAAGCTACGTACGTCATGCTTTCCCAACTGCCGGAAAAGGGTGCAGTAGGGTATTGGTTACAACTAGTTTTAAGAATATTGTAGTTCCTGCTGACAGTGGAGGTCGTCCTCCTCATGAACTAAATTTTTTGTCTGTAGAAGACGGATGGGAGTTACTTCGGAGGAAGGCATTTCCAGGGGCGAAGAATAATCCAGATTTTACCGTTGACGAAGTTAAGGAGAATTTAGGGAAGGAAATAGTCGAGAAATGTGATGGCTTACCACTGGCTATTGTTGTACTCGGAGGACTCTTAGCAGTTAGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.01

Weight (kDa)

8.68

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 151, 250
AfaI GTAC 2 cut(s) 39, 306
AfiI CCNNNNNNNGG 2 cut(s) 59, 66
AhlI ACTAGT 1 cut(s) 92
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
ApoI RAATTY 2 cut(s) 151, 250
BbsI GAAGAC 1 cut(s) 174
BccI CCATC 2 cut(s) 168, 275
BciT130I CCWGG 1 cut(s) 204
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 1 cut(s) 93
BfmI CTRYAG 1 cut(s) 162
Bme1390I CCNGG 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 204
BmrI ACTGGG 1 cut(s) 33
BmuI ACTGGG 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 203
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 66
Bse1I ACTGG 2 cut(s) 28, 297
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 203
BseGI GGATG 1 cut(s) 179
BseLI CCNNNNNNNGG 2 cut(s) 59, 66
BseNI ACTGG 2 cut(s) 28, 297
BseRI GAGGAG 1 cut(s) 129
BsgI GTGCAG 1 cut(s) 91
BsiSI CCGG 1 cut(s) 60
BsiWI CGTACG 1 cut(s) 37
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 59, 66
BsmFI GGGAC 1 cut(s) 40
BspHI TCATGA 1 cut(s) 142
BsrI ACTGG 2 cut(s) 28, 297
BssECI CCNNGG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 2 cut(s) 125, 232
BstBAI YACGTR 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 319
BstF5I GGATG 1 cut(s) 179
BstNI CCWGG 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 202
BstSFI CTRYAG 1 cut(s) 162
BstSNI TACGTA 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 174
BtsCI GGATG 1 cut(s) 179
BtsIMutI CAGTG 2 cut(s) 130, 290
CciI TCATGA 1 cut(s) 142
Csp6I GTAC 2 cut(s) 38, 305
CviAII CATG 2 cut(s) 44, 143
CviJI RGCY 3 cut(s) 33, 285, 296
CviKI_1 RGCY 3 cut(s) 33, 285, 296
CviQI GTAC 2 cut(s) 38, 305
DdeI CTNAG 1 cut(s) 319
Eco105I TACGTA 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 2 cut(s) 47, 146
FaiI YATR 2 cut(s) 45, 144
FaqI GGGAC 1 cut(s) 40
FatI CATG 2 cut(s) 43, 142
FokI GGATG 1 cut(s) 186
FspBI CTAG 1 cut(s) 93
HapII CCGG 1 cut(s) 60
Hin1II CATG 2 cut(s) 47, 146
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 1 cut(s) 315
HpaII CCGG 1 cut(s) 60
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 2 cut(s) 189, 311
Hpy188III TCNNGA 3 cut(s) 143, 221, 271
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 3 cut(s) 6, 187, 253
HpyCH4III ACNGT 2 cut(s) 125, 232
HpyCH4IV ACGT 2 cut(s) 36, 40
HpyCH4V TGCA 1 cut(s) 72
HpyF3I CTNAG 1 cut(s) 319
HpySE526I ACGT 2 cut(s) 36, 40
Hsp92II CATG 2 cut(s) 47, 146
LpnPI CCDG 7 cut(s) 9, 73, 129, 189, 216, 234, 278
MaeI CTAG 1 cut(s) 93
MaeII ACGT 2 cut(s) 36, 40
MaeIII GTNAC 2 cut(s) 85, 180
MboII GAAGA 2 cut(s) 179, 223
MluCI AATT 2 cut(s) 151, 250
MlyI GAGTC 1 cut(s) 309
MnlI CCTC 6 cut(s) 12, 122, 147, 150, 183, 305
MseI TTAA 2 cut(s) 99, 243
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 204
NlaIII CATG 2 cut(s) 47, 146
PagI TCATGA 1 cut(s) 142
Pfl23II CGTACG 1 cut(s) 37
PleI GAGTC 1 cut(s) 309
PpsI GAGTC 1 cut(s) 309
Ppu21I YACGTR 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 202
PspLI CGTACG 1 cut(s) 37
RsaI GTAC 2 cut(s) 39, 306
RsaNI GTAC 2 cut(s) 38, 305
SaqAI TTAA 2 cut(s) 99, 243
SchI GAGTC 1 cut(s) 309
ScrFI CCNGG 1 cut(s) 204
SetI ASST 4 cut(s) 35, 39, 43, 133
SfcI CTRYAG 1 cut(s) 162
SnaBI TACGTA 1 cut(s) 37
SpeI ACTAGT 1 cut(s) 92
Sse9I AATT 2 cut(s) 151, 250
SspI AATATT 1 cut(s) 106
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 202
TaaI ACNGT 2 cut(s) 125, 232
TaiI ACGT 2 cut(s) 39, 43
TaqI TCGA 1 cut(s) 270
TasI AATT 2 cut(s) 151, 250
TatI WGTACW 1 cut(s) 304
Tru1I TTAA 2 cut(s) 99, 243
Tru9I TTAA 2 cut(s) 99, 243
TscAI CASTG 2 cut(s) 130, 297
TspDTI ATGAA 1 cut(s) 159
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 2 cut(s) 130, 297
XapI RAATTY 2 cut(s) 151, 250
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.