Rh6BG152000

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
N/A
Physical Location & Seq
Reverse (-)
24431756 .. 24436012
4257 bp
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UTR
Exon/CDS
Intron
Rh6BG152000.1

Sequence Viewer

Length: 240 bp
ATGGAGAGGGTCTTGTCGTGGATAAGGAATTTGCTGAACTGGTCGTTGAGTTATGATGACAGCGAATTCAAGCATAACATGAAGAAGCTGAATAAATGGACCAAAGCTCTCAAGGAAGCGGCGGACTTGTCTGGATGGACTTACTTGAATGGCCCAGCCCAGTGCTGGCGACCAATCTCCACTACGACAACATGCTCTTCGCCCAAATCGACGCCATCTACGTTGCCCTCGGATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

9.05

Weight (kDa)

9.06

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 119, 122
AcsI RAATTY 2 cut(s) 28, 65
AcyI GRCGYC 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 165
AgsI TTSAA 2 cut(s) 70, 148
AluBI AGCT 2 cut(s) 88, 107
AluI AGCT 2 cut(s) 88, 107
AoxI GGCC 1 cut(s) 151
ApoI RAATTY 2 cut(s) 28, 65
AspS9I GGNCC 2 cut(s) 99, 152
AvaII GGWCC 1 cut(s) 99
BccI CCATC 2 cut(s) 129, 223
BfaI CTAG 1 cut(s) 238
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 2 cut(s) 99, 152
BmrI ACTGGG 1 cut(s) 154
BmuI ACTGGG 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 95
BsaHI GRCGYC 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 228
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 2 cut(s) 44, 160
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 165
BseNI ACTGG 2 cut(s) 44, 160
BseYI CCCAGC 1 cut(s) 154
BshFI GGCC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 165
BsnI GGCC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 232
BspACI CCGC 2 cut(s) 119, 122
BspANI GGCC 1 cut(s) 153
BspQI GCTCTTC 1 cut(s) 202
BsrI ACTGG 2 cut(s) 44, 160
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 1 cut(s) 232
BssNI GRCGYC 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 202
BstACI GRCGYC 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 167
BstF5I GGATG 1 cut(s) 140
BstKTI GATC 1 cut(s) 235
BstMBI GATC 1 cut(s) 232
BstNSI RCATGY 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 153
BtsCI GGATG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 99, 152
CseI GACGC 1 cut(s) 220
CviAII CATG 2 cut(s) 79, 192
CviJI RGCY 4 cut(s) 88, 107, 153, 158
CviKI_1 RGCY 4 cut(s) 88, 107, 153, 158
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
EciI GGCGGA 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 99
EcoRI GAATTC 1 cut(s) 65
FaeI CATG 2 cut(s) 82, 195
FaiI YATR 4 cut(s) 54, 75, 80, 193
FatI CATG 2 cut(s) 78, 191
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 1 cut(s) 238
GluI GCNGC 1 cut(s) 120
GsaI CCCAGC 1 cut(s) 158
HaeIII GGCC 1 cut(s) 153
HgaI GACGC 1 cut(s) 220
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 2 cut(s) 82, 195
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 132
Hpy99I CGWCG 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 221
HpySE526I ACGT 1 cut(s) 221
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 2 cut(s) 82, 195
Kzo9I GATC 1 cut(s) 232
LguI GCTCTTC 1 cut(s) 202
LpnPI CCDG 5 cut(s) 25, 117, 151, 168, 173
MaeI CTAG 1 cut(s) 238
MaeII ACGT 1 cut(s) 221
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 2 cut(s) 94, 189
MflI RGATCY 1 cut(s) 232
MluCI AATT 2 cut(s) 28, 65
MnlI CCTC 1 cut(s) 238
NdeII GATC 1 cut(s) 232
NlaIII CATG 2 cut(s) 82, 195
NspI RCATGY 1 cut(s) 195
PciSI GCTCTTC 1 cut(s) 202
PcsI WCGNNNNNNNCGW 2 cut(s) 206, 218
PkrI GCNGC 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 99, 152
PsuI RGATCY 1 cut(s) 232
SapI GCTCTTC 1 cut(s) 202
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 232
Sau96I GGNCC 2 cut(s) 99, 152
SetI ASST 3 cut(s) 90, 109, 224
SinI GGWCC 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 2 cut(s) 28, 65
SsiI CCGC 2 cut(s) 119, 122
SspMI CTAG 1 cut(s) 238
TaiI ACGT 1 cut(s) 224
TaqI TCGA 1 cut(s) 209
TasI AATT 2 cut(s) 28, 65
TauI GCSGC 1 cut(s) 122
TscAI CASTG 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 95
TspRI CASTG 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 99
XapI RAATTY 2 cut(s) 28, 65
XceI RCATGY 1 cut(s) 195
XcmI CCANNNNNNNNNTGG 1 cut(s) 162
XspI CTAG 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.