Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

40856302 .. 40856979

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG216700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAAAAACTCAAATATGGCTGCAACTTTTCTTTTCCTTCTTCTACTTCTTCAAGTTGCAGCTGCTCAACAAGGGAATATCAGCCTAGGTGCTTCTCTATATCCCAATAAAAACTCATATTGGTTATCGAATTCGGGTCAGTTTACCCTTGGCTTCTACAGGCAAGGAAATGACATCGCTGTAGGCATCTGGTTTGAGAAAACCATTCCGAAAACAGTCATCTGGACAGCAAATCGTGATGCTGTTAATCAAGAGCCACTACCTAATGATGTTCGATTGACTGTGAGGGACAGTGGAGTTGAGCTCATTTCAACAAGCAAGAATGCCTTCCTTATACCAATTTCAAATTCTTCCCAGCCTGCTGTCAGGGCCTCCATGCTTGATTTAGGTAACTTTGTGCTCTACAATTTTGATTTAAACATCATTTGGCAGACTTTTGATGTTCCAACAAATACCATTGTATCCGGGAAGCGTCTGTTGGCTGGAACAAAGCTCATCTCCTCCGTCTTGAACACGAATCACTCAAGTGGAAGGTTTCAACTGATCATGGAGGGAGATGGCAACCTGGTTCAGTATCCAATTGGCCCATTTACAGTGACAGTTGATCAATATGCTTATTGGAACACTGAGACATCCACAGCCGGGAACAATGTGTCCCTCAATCTTGATCAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

225

Amino Acids

24.8

Weight (kDa)

5.76

Isoelectric Point (pI)

24.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	72 - 160	9.3e-11	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	130, 346
AfiI	CCNNNNNNNGG	1 cut(s)	642
AgsI	TTSAA	5 cut(s)	53, 312, 345, 511, 539
AjnI	CCWGG	1 cut(s)	564
AjuI	GAANNNNNNNTTGG	4 cut(s)	331, 363, 461, 493
AleI	CACNNNNGTG	1 cut(s)	525
AloI	GAACNNNNNNTCC	2 cut(s)	638, 670
AluBI	AGCT	3 cut(s)	62, 304, 493
AluI	AGCT	3 cut(s)	62, 304, 493
Alw21I	GWGCWC	2 cut(s)	306, 402
Alw26I	GTCTC	1 cut(s)	623
AoxI	GGCC	2 cut(s)	369, 583
ApeKI	GCWGC	3 cut(s)	20, 59, 62
ApoI	RAATTY	2 cut(s)	130, 346
Asp700I	GAANNNNTTC	1 cut(s)	326
AspA2I	CCTAGG	1 cut(s)	85
AspS9I	GGNCC	2 cut(s)	369, 584
AsuC2I	CCSGG	2 cut(s)	466, 643
AvrII	CCTAGG	1 cut(s)	85
BaeI	ACNNNNGTAYC	2 cut(s)	444, 477
BanII	GRGCYC	1 cut(s)	306
Bbv12I	GWGCWC	2 cut(s)	306, 402
BbvI	GCAGC	3 cut(s)	7, 49, 71
BccI	CCATC	1 cut(s)	551
BciT130I	CCWGG	1 cut(s)	566
BciVI	GTATCC	2 cut(s)	472, 585
BclI	TGATCA	3 cut(s)	543, 604, 667
BcnI	CCSGG	2 cut(s)	466, 643
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	2 cut(s)	157, 180
BfuI	GTATCC	2 cut(s)	472, 585
BisI	GCNGC	3 cut(s)	21, 60, 63
BlnI	CCTAGG	1 cut(s)	85
BlsI	GCNGC	3 cut(s)	22, 61, 64
Bme1390I	CCNGG	3 cut(s)	466, 566, 643
BmgT120I	GGNCC	2 cut(s)	369, 584
BmrFI	CCNGG	3 cut(s)	466, 566, 643
BmsI	GCATC	2 cut(s)	195, 229
BplI	GAGNNNNNCTC	2 cut(s)	288, 320
BpuEI	CTTGAG	1 cut(s)	508
BpuMI	CCSGG	2 cut(s)	466, 643
BsaJI	CCNNGG	2 cut(s)	85, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	566
BseDI	CCNNGG	2 cut(s)	85, 148
BseGI	GGATG	1 cut(s)	632
BseLI	CCNNNNNNNGG	1 cut(s)	642
BseMII	CTCAG	1 cut(s)	618
BseRI	GAGGAG	1 cut(s)	490
BseXI	GCAGC	3 cut(s)	7, 49, 71
BseYI	CCCAGC	1 cut(s)	354
BshFI	GGCC	2 cut(s)	371, 585
BsiHKAI	GWGCWC	2 cut(s)	306, 402
BsiSI	CCGG	2 cut(s)	465, 642
BslFI	GGGAC	2 cut(s)	302, 640
BslI	CCNNNNNNNGG	1 cut(s)	642
BsmAI	GTCTC	1 cut(s)	623
BsmFI	GGGAC	2 cut(s)	302, 640
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	2 cut(s)	371, 585
Bsp1286I	GDGCHC	2 cut(s)	306, 402
Bsp143I	GATC	3 cut(s)	543, 604, 667
BspANI	GGCC	2 cut(s)	371, 585
BspCNI	CTCAG	1 cut(s)	619
BssECI	CCNNGG	2 cut(s)	85, 148
BssMI	GATC	3 cut(s)	543, 604, 667
BssT1I	CCWWGG	2 cut(s)	85, 148
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	5 cut(s)	217, 283, 293, 595, 601
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	1 cut(s)	627
BstF5I	GGATG	1 cut(s)	632
BstKTI	GATC	3 cut(s)	546, 607, 670
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	3 cut(s)	543, 604, 667
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	1 cut(s)	566
BstSCI	CCNGG	3 cut(s)	464, 564, 641
BstSFI	CTRYAG	2 cut(s)	157, 180
BstV1I	GCAGC	3 cut(s)	7, 49, 71
BsuI	GTATCC	2 cut(s)	472, 585
BsuRI	GGCC	2 cut(s)	371, 585
BtgZI	GCGATG	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	632
BtsIMutI	CAGTG	3 cut(s)	298, 600, 624
Cac8I	GCNNGC	1 cut(s)	360
Cfr13I	GGNCC	2 cut(s)	369, 584
CseI	GACGC	1 cut(s)	461
CsiI	ACCWGGT	1 cut(s)	564
CviAII	CATG	2 cut(s)	376, 547
DdeI	CTNAG	1 cut(s)	627
DpnI	GATC	3 cut(s)	545, 606, 669
DpnII	GATC	3 cut(s)	543, 604, 667
DraI	TTTAAA	1 cut(s)	417
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	2 cut(s)	85, 148
Eco24I	GRGCYC	1 cut(s)	306
Eco53kI	GAGCTC	1 cut(s)	304
EcoICRI	GAGCTC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	369
EcoRI	GAATTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	564
EcoT14I	CCWWGG	2 cut(s)	85, 148
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	2 cut(s)	85, 148
FaeI	CATG	2 cut(s)	379, 550
FaiI	YATR	7 cut(s)	17, 100, 118, 335, 377, 548, 612
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	2 cut(s)	302, 640
FatI	CATG	2 cut(s)	375, 546
FbaI	TGATCA	3 cut(s)	543, 604, 667
Fnu4HI	GCNGC	3 cut(s)	21, 60, 63
FokI	GGATG	1 cut(s)	619
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	3 cut(s)	21, 60, 63
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	3 cut(s)	21, 60, 63
GsaI	CCCAGC	1 cut(s)	358
HaeIII	GGCC	2 cut(s)	371, 585
HapII	CCGG	2 cut(s)	465, 642
HgaI	GACGC	1 cut(s)	461
Hin1II	CATG	2 cut(s)	379, 550
HinfI	GANTC	1 cut(s)	517
HpaII	CCGG	2 cut(s)	465, 642
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	5 cut(s)	223, 236, 251, 508, 665
Hpy8I	GTNNAC	1 cut(s)	144
HpyAV	CCTTC	3 cut(s)	47, 337, 525
HpyCH4III	ACNGT	5 cut(s)	217, 283, 293, 595, 601
HpyCH4V	TGCA	2 cut(s)	23, 59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	1 cut(s)	627
Hsp92II	CATG	2 cut(s)	379, 550
Ksp22I	TGATCA	3 cut(s)	543, 604, 667
Kzo9I	GATC	3 cut(s)	543, 604, 667
Lsp1109I	GCAGC	3 cut(s)	7, 49, 71
LweI	GCATC	2 cut(s)	195, 229
MabI	ACCWGGT	1 cut(s)	564
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	389, 595
MalI	GATC	3 cut(s)	545, 606, 669
MboI	GATC	3 cut(s)	543, 604, 667
MboII	GAAGA	3 cut(s)	32, 41, 342
MfeI	CAATTG	1 cut(s)	579
MhlI	GDGCHC	2 cut(s)	306, 402
MluCI	AATT	6 cut(s)	130, 339, 346, 406, 579, 673
MmeI	TCCRAC	1 cut(s)	470
MnlI	CCTC	5 cut(s)	279, 382, 511, 544, 668
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	2 cut(s)	246, 416
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	2 cut(s)	465, 642
MspR9I	CCNGG	3 cut(s)	466, 566, 643
MunI	CAATTG	1 cut(s)	579
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	566
MwoI	GCNNNNNNNGC	1 cut(s)	368
NciI	CCSGG	2 cut(s)	466, 643
NdeII	GATC	3 cut(s)	543, 604, 667
NlaIII	CATG	2 cut(s)	379, 550
NmuCI	GTSAC	1 cut(s)	595
OliI	CACNNNNGTG	1 cut(s)	525
PctI	GAATGC	1 cut(s)	328
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	517
PfoI	TCCNGGA	1 cut(s)	464
PkrI	GCNGC	3 cut(s)	22, 61, 64
Psp124BI	GAGCTC	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	564
PspFI	CCCAGC	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	564
PspPI	GGNCC	2 cut(s)	369, 584
PvuII	CAGCTG	1 cut(s)	62
RseI	CAYNNNNRTG	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	246, 416
SatI	GCNGC	3 cut(s)	21, 60, 63
Sau3AI	GATC	3 cut(s)	543, 604, 667
Sau96I	GGNCC	2 cut(s)	369, 584
ScrFI	CCNGG	3 cut(s)	466, 566, 643
SduI	GDGCHC	2 cut(s)	306, 402
SetI	ASST	8 cut(s)	64, 91, 265, 306, 391, 495, 536, 567
SexAI	ACCWGGT	1 cut(s)	564
SfaNI	GCATC	2 cut(s)	195, 229
SfcI	CTRYAG	2 cut(s)	157, 180
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
Sse9I	AATT	6 cut(s)	130, 339, 346, 406, 579, 673
SspMI	CTAG	1 cut(s)	86
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	3 cut(s)	464, 564, 641
StyI	CCWWGG	2 cut(s)	85, 148
TaaI	ACNGT	5 cut(s)	217, 283, 293, 595, 601
TaqI	TCGA	2 cut(s)	128, 274
TasI	AATT	6 cut(s)	130, 339, 346, 406, 579, 673
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	2 cut(s)	246, 416
Tru9I	TTAA	2 cut(s)	246, 416
TscAI	CASTG	3 cut(s)	298, 600, 631
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	3 cut(s)	20, 59, 62
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	493
TspRI	CASTG	3 cut(s)	298, 600, 631
XapI	RAATTY	2 cut(s)	130, 346
XmaJI	CCTAGG	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.