Rh6BG395100

AUX/IAA family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
N/A
Physical Location & Seq
Forward (+)
62344058 .. 62347901
3844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG395100.1

Sequence Viewer

Length: 1284 bp
ATGGAGCTCTGGAGTGCTTTGTCTTTGCTTCTTCTTTCTGCATTCCAGCTTGTTTCTGCACAAACAACCACTTCTCCTGATGAAGTTACTGCTCTCCACAAGGTAGTAGAACACTGGAACTTGGTAAATCACTTGAATCTTACCATTGACCCCTGCACTGAAAATGCAACATGGGCATCTGGAACTGCGAATCCCCGTGTGGCTTGCGATTGTACAGGCAGCGCCTGCCATATTACTCACCTGAATCTTGGTCAGAATGTATTAAGCGGGCGCATTCCTCCTGAAATAGGACTGTTATCCAACATGCAGTATCTTAGCTTAGGCGTAAACAATCTGTCAGGTCCAGTTCCATCAGAGCTTGGCAACTTGGCCAAGTTGGTTGAGCTAAGTTTTAGCTCAAACCAGTTCTCTGGACCATTGCCCTTGGACCTTGGAAAACTGACCTCCTTGCAGCAGTTGTACGTAGACAGCAGTGGAGTAACTGGACCAATTCCACAGGAGCTTTCAAACTTAAAATCCCTTCAAACTTTCTGGGCATCTGATAATCTCTTCACCGGAAAACTCCCACAGTTCTTAGGGACTCTTACAGAACTCATAGACTTGCGACTTGAAGGCACGTTGCTTGATGGACCAATTCCAAGCAATTTTGGTGCTCTAACCAAACTAGACATCTTGAGAATTGGTGATCTTAGCAACGAAGATTCTTCTCTTGATTTTTTGGAAAATCTAACAAGTTTGTCCATGCTGTCTTTGAGAAGTTGTCGAGTATCTGGAGAAATTCCTGAACAAATTGGAAAGTTTTCCAAGTTGCAATACCTCTCAGTGGGGAACCTGGATTGTTGCATTGTCTCCAAGGAGACACCAAGTGCAGTAACAAACTACCAGCATGGTGAGAGAGTGGTCCAAGACTTGAACATTCAGAAGGAAGCAGGGGGATCCAAGAAGGCATTGATCAAAACATTCGAGACAAACGTGTCAAACACAATTATGGACATCCATTTCCTGTGGGCTGGAAAAGGCACTTGCTGCATTCCATATCAAGGCACATATGGACCTCTGGTCTCAGCAATCCATGTTTATCAAGTCTCGGATGCCGGGTCTTCTTCGAAAAGCGAGAGGAAGCGTGTGGGAAGGATTGTGGGAGTGTCATTTGGATGTGCAGCTGTTGTGATCATAATGTCATCAGTGTTCTACCTATGGTGGATTAAAGATGATGCTGAACCCAGACATGTGCAAGAAATGAGCAACCAAGTGAGAATGTTGTATTTGGGATCAAATAGTTGA

Protein Analysis

427

Amino Acids

46.38

Weight (kDa)

5.4

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 71 - 155 3.3e-07 Leucine-rich repeat region
LRR_14 PF23598 163 - 249 4.9e-07 Leucine-rich repeat region
Malectin PF11721 297 - 357 8.6e-11 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 973
AccI GTMKAC 1 cut(s) 465
AciI CCGC 1 cut(s) 267
AclWI GGATC 3 cut(s) 930, 943, 1279
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 1 cut(s) 777
AdeI CACNNNGTG 1 cut(s) 866
AfaI GTAC 2 cut(s) 214, 461
AfiI CCNNNNNNNGG 3 cut(s) 287, 823, 1040
AflIII ACRYGT 2 cut(s) 972, 1228
AgsI TTSAA 5 cut(s) 136, 507, 524, 611, 913
AhdI GACNNNNNGTC 1 cut(s) 1058
AjnI CCWGG 1 cut(s) 831
AloI GAACNNNNNNTCC 2 cut(s) 175, 207
AluBI AGCT 8 cut(s) 7, 49, 318, 358, 385, 396, 502, 1163
AluI AGCT 8 cut(s) 7, 49, 318, 358, 385, 396, 502, 1163
Alw21I GWGCWC 2 cut(s) 9, 655
Alw26I GTCTC 5 cut(s) 851, 853, 959, 1066, 1090
AlwI GGATC 3 cut(s) 930, 943, 1279
AlwNI CAGNNNCTG 1 cut(s) 225
AoxI GGCC 1 cut(s) 369
ApeKI GCWGC 4 cut(s) 219, 451, 1026, 1160
ApoI RAATTY 1 cut(s) 777
Asp700I GAANNNNTTC 1 cut(s) 799
AspLEI GCGC 2 cut(s) 224, 273
AspS9I GGNCC 7 cut(s) 341, 413, 427, 485, 629, 901, 1052
AsuC2I CCSGG 1 cut(s) 1096
AsuHPI GGTGA 4 cut(s) 230, 544, 695, 902
AsuII TTCGAA 1 cut(s) 1106
AvaII GGWCC 7 cut(s) 341, 413, 427, 485, 629, 901, 1052
BalI TGGCCA 1 cut(s) 371
BamHI GGATCC 1 cut(s) 935
BanII GRGCYC 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 1092
Bbv12I GWGCWC 2 cut(s) 9, 655
BbvI GCAGC 4 cut(s) 231, 463, 1013, 1172
BccI CCATC 2 cut(s) 358, 620
BciT130I CCWGG 1 cut(s) 833
BclI TGATCA 2 cut(s) 951, 1170
BcnI CCSGG 1 cut(s) 1096
BcoDI GTCTC 5 cut(s) 851, 853, 959, 1066, 1090
BfaI CTAG 1 cut(s) 665
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 4 cut(s) 220, 452, 1027, 1161
BlsI GCNGC 4 cut(s) 221, 453, 1028, 1162
Bme1390I CCNGG 2 cut(s) 833, 1096
Bme18I GGWCC 7 cut(s) 341, 413, 427, 485, 629, 901, 1052
BmeRI GACNNNNNGTC 1 cut(s) 1058
BmgT120I GGNCC 7 cut(s) 341, 413, 427, 485, 629, 901, 1052
BmiI GGNNCC 2 cut(s) 830, 937
BmrFI CCNGG 2 cut(s) 833, 1096
BmsI GCATC 4 cut(s) 185, 545, 1081, 1204
BpiI GAAGAC 1 cut(s) 1092
BpmI CTGGAG 2 cut(s) 31, 792
Bpu10I CCTNAGC 1 cut(s) 319
Bpu14I TTCGAA 1 cut(s) 1106
BpuEI CTTGAG 1 cut(s) 694
BpuMI CCSGG 1 cut(s) 1096
BsaAI YACGTR 1 cut(s) 463
BsaI GGTCTC 1 cut(s) 1066
BsaJI CCNNGG 3 cut(s) 423, 430, 852
BsaWI WCCGGW 1 cut(s) 554
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 3 cut(s) 287, 823, 1040
Bse1I ACTGG 4 cut(s) 119, 344, 403, 487
Bse3DI GCAATG 1 cut(s) 416
BseBI CCWGG 1 cut(s) 833
BseDI CCNNGG 3 cut(s) 423, 430, 852
BseGI GGATG 3 cut(s) 993, 1096, 1160
BseLI CCNNNNNNNGG 3 cut(s) 287, 823, 1040
BseMI GCAATG 1 cut(s) 416
BseMII CTCAG 2 cut(s) 834, 1077
BseNI ACTGG 4 cut(s) 119, 344, 403, 487
BseXI GCAGC 4 cut(s) 231, 463, 1013, 1172
BsgI GTGCAG 4 cut(s) 42, 139, 888, 1179
BshFI GGCC 1 cut(s) 371
BsiHKAI GWGCWC 2 cut(s) 9, 655
BsiSI CCGG 2 cut(s) 555, 1095
BslFI GGGAC 1 cut(s) 592
BslI CCNNNNNNNGG 3 cut(s) 287, 823, 1040
BsmAI GTCTC 5 cut(s) 851, 853, 959, 1066, 1090
BsmFI GGGAC 1 cut(s) 592
BsmI GAATGC 3 cut(s) 41, 273, 1029
BsnI GGCC 1 cut(s) 371
Bso31I GGTCTC 1 cut(s) 1066
Bsp119I TTCGAA 1 cut(s) 1106
Bsp1286I GDGCHC 2 cut(s) 9, 655
Bsp1407I TGTACA 1 cut(s) 212
Bsp143I GATC 5 cut(s) 685, 935, 951, 1170, 1271
BspACI CCGC 1 cut(s) 267
BspANI GGCC 1 cut(s) 371
BspCNI CTCAG 2 cut(s) 833, 1076
BspLI GGNNCC 2 cut(s) 830, 937
BspPI GGATC 3 cut(s) 930, 943, 1279
BspT104I TTCGAA 1 cut(s) 1106
BspTNI GGTCTC 1 cut(s) 1066
BsrDI GCAATG 1 cut(s) 416
BsrGI TGTACA 1 cut(s) 212
BsrI ACTGG 4 cut(s) 119, 344, 403, 487
BssECI CCNNGG 3 cut(s) 423, 430, 852
BssMI GATC 5 cut(s) 685, 935, 951, 1170, 1271
BssT1I CCWWGG 3 cut(s) 423, 430, 852
Bst2UI CCWGG 1 cut(s) 833
Bst4CI ACNGT 2 cut(s) 294, 570
Bst6I CTCTTC 1 cut(s) 554
BstAPI GCANNNNNTGC 2 cut(s) 225, 1026
BstAUI TGTACA 1 cut(s) 212
BstBAI YACGTR 1 cut(s) 463
BstBI TTCGAA 1 cut(s) 1106
BstC8I GCNNGC 3 cut(s) 205, 226, 269
BstDEI CTNAG 7 cut(s) 314, 319, 386, 574, 689, 820, 1063
BstENI CCTNNNNNAGG 1 cut(s) 285
BstF5I GGATG 3 cut(s) 993, 1096, 1160
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 2 cut(s) 224, 273
BstKTI GATC 5 cut(s) 688, 938, 954, 1173, 1274
BstMAI GTCTC 5 cut(s) 851, 853, 959, 1066, 1090
BstMBI GATC 5 cut(s) 685, 935, 951, 1170, 1271
BstMWI GCNNNNNNNGC 3 cut(s) 173, 225, 1026
BstNI CCWGG 1 cut(s) 833
BstNSI RCATGY 2 cut(s) 307, 1232
BstSCI CCNGG 2 cut(s) 831, 1094
BstSNI TACGTA 1 cut(s) 463
BstV1I GCAGC 4 cut(s) 231, 463, 1013, 1172
BstV2I GAAGAC 1 cut(s) 1092
BstX2I RGATCY 1 cut(s) 935
BstXI CCANNNNNNTGG 1 cut(s) 410
BstYI RGATCY 1 cut(s) 935
BsuRI GGCC 1 cut(s) 371
BtsCI GGATG 3 cut(s) 993, 1096, 1160
BtsI GCAGTG 1 cut(s) 478
BtsIMutI CAGTG 5 cut(s) 112, 156, 478, 828, 1191
Cac8I GCNNGC 3 cut(s) 205, 226, 269
CaiI CAGNNNCTG 1 cut(s) 225
CfoI GCGC 2 cut(s) 224, 273
Cfr13I GGNCC 7 cut(s) 341, 413, 427, 485, 629, 901, 1052
Csp6I GTAC 2 cut(s) 213, 460
CviAII CATG 6 cut(s) 171, 304, 742, 887, 1073, 1229
CviQI GTAC 2 cut(s) 213, 460
DdeI CTNAG 7 cut(s) 314, 319, 386, 574, 689, 820, 1063
DpnI GATC 5 cut(s) 687, 937, 953, 1172, 1273
DpnII GATC 5 cut(s) 685, 935, 951, 1170, 1271
DraIII CACNNNGTG 1 cut(s) 866
DrdI GACNNNNNNGTC 1 cut(s) 973
DriI GACNNNNNGTC 1 cut(s) 1058
DseDI GACNNNNNNGTC 1 cut(s) 973
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 554
Eam1105I GACNNNNNGTC 1 cut(s) 1058
EarI CTCTTC 1 cut(s) 554
Ecl136II GAGCTC 1 cut(s) 7
Eco105I TACGTA 1 cut(s) 463
Eco130I CCWWGG 3 cut(s) 423, 430, 852
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 1066
Eco47I GGWCC 7 cut(s) 341, 413, 427, 485, 629, 901, 1052
Eco53kI GAGCTC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 7
EcoNI CCTNNNNNAGG 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 831
EcoT14I CCWWGG 3 cut(s) 423, 430, 852
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 3 cut(s) 423, 430, 852
FaeI CATG 6 cut(s) 174, 307, 745, 890, 1076, 1232
FaqI GGGAC 1 cut(s) 592
FatI CATG 6 cut(s) 170, 303, 741, 886, 1072, 1228
FauI CCCGC 1 cut(s) 260
FauNDI CATATG 1 cut(s) 1048
FbaI TGATCA 2 cut(s) 951, 1170
FblI GTMKAC 1 cut(s) 465
Fnu4HI GCNGC 4 cut(s) 220, 452, 1027, 1161
FokI GGATG 3 cut(s) 980, 1103, 1167
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 4 cut(s) 220, 452, 1027, 1161
FspBI CTAG 1 cut(s) 665
GlaI GCGC 2 cut(s) 223, 272
GluI GCNGC 4 cut(s) 220, 452, 1027, 1161
GsuI CTGGAG 2 cut(s) 31, 792
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 1 cut(s) 371
HapII CCGG 2 cut(s) 555, 1095
HhaI GCGC 2 cut(s) 224, 273
Hin1II CATG 6 cut(s) 174, 307, 745, 890, 1076, 1232
Hin6I GCGC 2 cut(s) 222, 271
HinP1I GCGC 2 cut(s) 222, 271
HinfI GANTC 5 cut(s) 136, 190, 244, 580, 701
HpaII CCGG 2 cut(s) 555, 1095
HphI GGTGA 4 cut(s) 230, 544, 695, 902
Hpy166II GTNNAC 2 cut(s) 328, 466
Hpy188I TCNGA 5 cut(s) 255, 355, 541, 921, 1090
Hpy8I GTNNAC 2 cut(s) 328, 466
HpyAV CCTTC 5 cut(s) 530, 605, 916, 937, 1125
HpyCH4III ACNGT 2 cut(s) 294, 570
HpyCH4IV ACGT 3 cut(s) 462, 617, 972
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 225, 1026
HpyF3I CTNAG 7 cut(s) 314, 319, 386, 574, 689, 820, 1063
HpySE526I ACGT 3 cut(s) 462, 617, 972
Hsp92II CATG 6 cut(s) 174, 307, 745, 890, 1076, 1232
HspAI GCGC 2 cut(s) 222, 271
Ksp22I TGATCA 2 cut(s) 951, 1170
Kzo9I GATC 5 cut(s) 685, 935, 951, 1170, 1271
LmnI GCTCC 2 cut(s) 4, 499
Lsp1109I GCAGC 4 cut(s) 231, 463, 1013, 1172
LweI GCATC 4 cut(s) 185, 545, 1081, 1204
MaeI CTAG 1 cut(s) 665
MaeII ACGT 3 cut(s) 462, 617, 972
MaeIII GTNAC 3 cut(s) 85, 478, 871
MalI GATC 5 cut(s) 687, 937, 953, 1172, 1273
MboI GATC 5 cut(s) 685, 935, 951, 1170, 1271
MboII GAAGA 6 cut(s) 23, 541, 696, 710, 1092, 1095
MflI RGATCY 1 cut(s) 935
MhlI GDGCHC 2 cut(s) 9, 655
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 7 cut(s) 489, 633, 643, 678, 777, 789, 984
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 1 cut(s) 574
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 5 cut(s) 288, 454, 827, 1065, 1110
Mox20I TGGCCA 1 cut(s) 371
MroXI GAANNNNTTC 1 cut(s) 799
MscI TGGCCA 1 cut(s) 371
MseI TTAA 3 cut(s) 263, 512, 1206
MslI CAYNNNNRTG 2 cut(s) 986, 1153
Msp20I TGGCCA 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 1163
MspI CCGG 2 cut(s) 555, 1095
MspR9I CCNGG 2 cut(s) 833, 1096
Mva1269I GAATGC 3 cut(s) 41, 273, 1029
MvaI CCWGG 1 cut(s) 833
MwoI GCNNNNNNNGC 3 cut(s) 173, 225, 1026
NciI CCSGG 1 cut(s) 1096
NdeI CATATG 1 cut(s) 1048
NdeII GATC 5 cut(s) 685, 935, 951, 1170, 1271
NlaIII CATG 6 cut(s) 174, 307, 745, 890, 1076, 1232
NlaIV GGNNCC 2 cut(s) 830, 937
NspI RCATGY 2 cut(s) 307, 1232
NspV TTCGAA 1 cut(s) 1106
PciI ACATGT 1 cut(s) 1228
PcsI WCGNNNNNNNCGW 1 cut(s) 969
PctI GAATGC 3 cut(s) 41, 273, 1029
PdmI GAANNNNTTC 1 cut(s) 799
PfeI GAWTC 4 cut(s) 136, 190, 244, 701
PkrI GCNGC 4 cut(s) 221, 453, 1028, 1162
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
Ppu21I YACGTR 1 cut(s) 463
PscI ACATGT 1 cut(s) 1228
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 831
PspGI CCWGG 1 cut(s) 831
PspN4I GGNNCC 2 cut(s) 830, 937
PspPI GGNCC 7 cut(s) 341, 413, 427, 485, 629, 901, 1052
PstNI CAGNNNCTG 1 cut(s) 225
PsuI RGATCY 1 cut(s) 935
PvuII CAGCTG 1 cut(s) 1163
RsaI GTAC 2 cut(s) 214, 461
RsaNI GTAC 2 cut(s) 213, 460
RseI CAYNNNNRTG 2 cut(s) 986, 1153
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 3 cut(s) 263, 512, 1206
SatI GCNGC 4 cut(s) 220, 452, 1027, 1161
Sau3AI GATC 5 cut(s) 685, 935, 951, 1170, 1271
Sau96I GGNCC 7 cut(s) 341, 413, 427, 485, 629, 901, 1052
SchI GAGTC 1 cut(s) 574
ScrFI CCNGG 2 cut(s) 833, 1096
SduI GDGCHC 2 cut(s) 9, 655
SfaNI GCATC 4 cut(s) 185, 545, 1081, 1204
SfuI TTCGAA 1 cut(s) 1106
SinI GGWCC 7 cut(s) 341, 413, 427, 485, 629, 901, 1052
SmiMI CAYNNNNRTG 2 cut(s) 986, 1153
SmlI CTYRAG 1 cut(s) 673
SmoI CTYRAG 1 cut(s) 673
SnaBI TACGTA 1 cut(s) 463
Sse9I AATT 7 cut(s) 489, 633, 643, 678, 777, 789, 984
SsiI CCGC 1 cut(s) 267
SspMI CTAG 1 cut(s) 665
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 831, 1094
StyI CCWWGG 3 cut(s) 423, 430, 852
TaaI ACNGT 2 cut(s) 294, 570
TaiI ACGT 3 cut(s) 465, 620, 975
TaqI TCGA 3 cut(s) 763, 963, 1106
TasI AATT 7 cut(s) 489, 633, 643, 678, 777, 789, 984
TatI WGTACW 1 cut(s) 212
TfiI GAWTC 4 cut(s) 136, 190, 244, 701
Tru1I TTAA 3 cut(s) 263, 512, 1206
Tru9I TTAA 3 cut(s) 263, 512, 1206
TscAI CASTG 5 cut(s) 119, 163, 478, 828, 1191
TseI GCWGC 4 cut(s) 219, 451, 1026, 1160
TspDTI ATGAA 1 cut(s) 96
TspRI CASTG 5 cut(s) 119, 163, 478, 828, 1191
VpaK11BI GGWCC 7 cut(s) 341, 413, 427, 485, 629, 901, 1052
XagI CCTNNNNNAGG 1 cut(s) 285
XapI RAATTY 1 cut(s) 777
XceI RCATGY 2 cut(s) 307, 1232
XmiI GTMKAC 1 cut(s) 465
XmnI GAANNNNTTC 1 cut(s) 799
XspI CTAG 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.