Rh6BG399600

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
N/A
Physical Location & Seq
Reverse (-)
62730666 .. 62731355
690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG399600.1

Sequence Viewer

Length: 690 bp
ATGAAACTTGGTTGGTCTCAGCTTAACAGTAACCAACCAATCTATCTCGTTTTTGTTTCTTGGGTGAACCCTCAAAACCCTGCTCCTGGCAACTTTACCTTAACCATGAACAGGATCAACTTTACAAAGCTTCAGGTTTGGCGAGGAAATAATGATCAAATGAATGTTGGGTTTTGGGATGGACATAATATGCGGTTTATCTTTAATAACTCAACAAGTGGAAATGACTACAATTTTAGTTACCACTCCAATGCAGATGAAGTCTACTTTACTTTTAGTGGGAATAAGAATTATGACCTCATGTGGTTTGTGATGGCTTCCACGGGAAAGCTAGATCAGTATTATATGGTGGATGGGAAGATTTCTTCTGTGAGTAATGCTGTGTGTGATCCAACTGGGAGGTGCTTGAATTCCCTACCATCTATGTGTAAGAATGGTGATAGTTTTTCACAGGTGAAGGGTTCACTGCCTTCTACTTTTAATAGTGGTTCTATAAATATGGGGACTACAGATTGTGAATCTTGGTGCCGGAGCAATTGTTCTTGTACATCATTTGCTTCACCTCAGAATGATCAAGTATGCCAACTTTATTACGGGAGTACACATGATTTATTGAAGATCATAGAGAAGGGGACAGGAATCATATACATCCGCGGTGGTGCTCCAAGTGGTAAGTCGGAAATTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

229

Amino Acids

25.53

Weight (kDa)

6.79

Isoelectric Point (pI)

29.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 143 - 197 2.9e-06 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 525
AccI GTMKAC 1 cut(s) 264
AccII CGCG 1 cut(s) 654
AciI CCGC 3 cut(s) 193, 652, 654
AclWI GGATC 2 cut(s) 122, 383
AcsI RAATTY 2 cut(s) 409, 681
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 2 cut(s) 547, 601
AfiI CCNNNNNNNGG 2 cut(s) 86, 111
AgsI TTSAA 2 cut(s) 409, 616
AjnI CCWGG 1 cut(s) 85
AloI GAACNNNNNNTCC 2 cut(s) 523, 555
AluBI AGCT 3 cut(s) 22, 130, 331
AluI AGCT 3 cut(s) 22, 130, 331
Alw21I GWGCWC 1 cut(s) 664
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 2 cut(s) 122, 383
ApoI RAATTY 2 cut(s) 409, 681
AsuHPI GGTGA 4 cut(s) 76, 449, 466, 552
BanI GGYRCC 1 cut(s) 525
Bbv12I GWGCWC 1 cut(s) 664
BccI CCATC 4 cut(s) 173, 307, 347, 427
BciT130I CCWGG 1 cut(s) 87
BclI TGATCA 2 cut(s) 154, 571
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 507
Bme1390I CCNGG 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 527
BmrFI CCNGG 1 cut(s) 87
BmrI ACTGGG 1 cut(s) 405
BmuI ACTGGG 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 21
BsaJI CCNNGG 2 cut(s) 321, 652
BsaXI ACNNNNNCTCC 2 cut(s) 523, 553
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 111
Bse1I ACTGG 1 cut(s) 400
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 2 cut(s) 321, 652
BseGI GGATG 3 cut(s) 184, 358, 648
BseLI CCNNNNNNNGG 2 cut(s) 86, 111
BseMII CTCAG 2 cut(s) 32, 578
BseNI ACTGG 1 cut(s) 400
Bsh1236I CGCG 1 cut(s) 654
BshNI GGYRCC 1 cut(s) 525
BsiHKAI GWGCWC 1 cut(s) 664
BsiSI CCGG 1 cut(s) 529
BslFI GGGAC 2 cut(s) 517, 646
BslI CCNNNNNNNGG 2 cut(s) 86, 111
BsmAI GTCTC 1 cut(s) 21
BsmFI GGGAC 2 cut(s) 517, 646
Bso31I GGTCTC 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 664
Bsp1407I TGTACA 1 cut(s) 545
Bsp143I GATC 6 cut(s) 114, 154, 334, 388, 571, 618
BspACI CCGC 3 cut(s) 193, 652, 654
BspCNI CTCAG 2 cut(s) 31, 577
BspFNI CGCG 1 cut(s) 654
BspLI GGNNCC 1 cut(s) 527
BspPI GGATC 2 cut(s) 122, 383
BspT107I GGYRCC 1 cut(s) 525
BspTNI GGTCTC 1 cut(s) 21
BsrGI TGTACA 1 cut(s) 545
BsrI ACTGG 1 cut(s) 400
BssECI CCNNGG 2 cut(s) 321, 652
BssMI GATC 6 cut(s) 114, 154, 334, 388, 571, 618
Bst2UI CCWGG 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 545
BstDEI CTNAG 2 cut(s) 18, 564
BstDSI CCRYGG 2 cut(s) 321, 652
BstF5I GGATG 3 cut(s) 184, 358, 648
BstFNI CGCG 1 cut(s) 654
BstKTI GATC 6 cut(s) 117, 157, 337, 391, 574, 621
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 6 cut(s) 114, 154, 334, 388, 571, 618
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 507
BstUI CGCG 1 cut(s) 654
BtgI CCRYGG 2 cut(s) 321, 652
BtsCI GGATG 3 cut(s) 184, 358, 648
BtsI GCAGTG 1 cut(s) 464
BtsIMutI CAGTG 1 cut(s) 464
Cfr42I CCGCGG 1 cut(s) 655
Csp6I GTAC 2 cut(s) 546, 600
CviAII CATG 3 cut(s) 106, 301, 605
CviJI RGCY 4 cut(s) 22, 130, 317, 331
CviKI_1 RGCY 4 cut(s) 22, 130, 317, 331
CviQI GTAC 2 cut(s) 546, 600
DdeI CTNAG 2 cut(s) 18, 564
DpnI GATC 6 cut(s) 116, 156, 336, 390, 573, 620
DpnII GATC 6 cut(s) 114, 154, 334, 388, 571, 618
Eco31I GGTCTC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 116
EcoRI GAATTC 1 cut(s) 409
EcoRII CCWGG 1 cut(s) 85
FaeI CATG 3 cut(s) 109, 304, 608
FaqI GGGAC 2 cut(s) 517, 646
FatI CATG 3 cut(s) 105, 300, 604
FbaI TGATCA 2 cut(s) 154, 571
FblI GTMKAC 1 cut(s) 264
FokI GGATG 3 cut(s) 191, 365, 635
FspBI CTAG 1 cut(s) 332
HapII CCGG 1 cut(s) 529
Hin1II CATG 3 cut(s) 109, 304, 608
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 2 cut(s) 518, 639
HpaII CCGG 1 cut(s) 529
HphI GGTGA 4 cut(s) 76, 449, 466, 552
Hpy166II GTNNAC 4 cut(s) 67, 265, 464, 602
Hpy188I TCNGA 2 cut(s) 567, 679
Hpy8I GTNNAC 4 cut(s) 67, 265, 464, 602
HpyAV CCTTC 3 cut(s) 451, 480, 622
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 254
HpyF3I CTNAG 2 cut(s) 18, 564
Hsp92II CATG 3 cut(s) 109, 304, 608
Ksp22I TGATCA 2 cut(s) 154, 571
KspI CCGCGG 1 cut(s) 655
Kzo9I GATC 6 cut(s) 114, 154, 334, 388, 571, 618
LmnI GCTCC 3 cut(s) 88, 531, 667
LpnPI CCDG 9 cut(s) 72, 93, 97, 99, 119, 381, 437, 542, 621
MaeI CTAG 1 cut(s) 332
MaeIII GTNAC 2 cut(s) 29, 239
MalI GATC 6 cut(s) 116, 156, 336, 390, 573, 620
MboI GATC 6 cut(s) 114, 154, 334, 388, 571, 618
MboII GAAGA 3 cut(s) 357, 370, 628
MfeI CAATTG 1 cut(s) 535
MhlI GDGCHC 1 cut(s) 664
MluCI AATT 5 cut(s) 232, 289, 409, 535, 681
MmeI TCCRAC 2 cut(s) 416, 657
MnlI CCTC 5 cut(s) 81, 137, 308, 393, 573
MseI TTAA 4 cut(s) 24, 101, 204, 480
MslI CAYNNNNRTG 2 cut(s) 249, 424
MspA1I CMGCKG 1 cut(s) 654
MspI CCGG 1 cut(s) 529
MspR9I CCNGG 1 cut(s) 87
MunI CAATTG 1 cut(s) 535
MvaI CCWGG 1 cut(s) 87
MvnI CGCG 1 cut(s) 654
NdeII GATC 6 cut(s) 114, 154, 334, 388, 571, 618
NlaIII CATG 3 cut(s) 109, 304, 608
NlaIV GGNNCC 1 cut(s) 527
PfeI GAWTC 2 cut(s) 518, 639
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 527
RsaI GTAC 2 cut(s) 547, 601
RsaNI GTAC 2 cut(s) 546, 600
RseI CAYNNNNRTG 2 cut(s) 249, 424
SacII CCGCGG 1 cut(s) 655
SaqAI TTAA 4 cut(s) 24, 101, 204, 480
Sau3AI GATC 6 cut(s) 114, 154, 334, 388, 571, 618
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 1 cut(s) 664
SetI ASST 9 cut(s) 24, 101, 132, 138, 300, 333, 404, 456, 565
SfcI CTRYAG 1 cut(s) 507
Sfr303I CCGCGG 1 cut(s) 655
SgrBI CCGCGG 1 cut(s) 655
SmiMI CAYNNNNRTG 2 cut(s) 249, 424
Sse9I AATT 5 cut(s) 232, 289, 409, 535, 681
SsiI CCGC 3 cut(s) 193, 652, 654
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 29
TasI AATT 5 cut(s) 232, 289, 409, 535, 681
TatI WGTACW 2 cut(s) 545, 599
TfiI GAWTC 2 cut(s) 518, 639
Tru1I TTAA 4 cut(s) 24, 101, 204, 480
Tru9I TTAA 4 cut(s) 24, 101, 204, 480
TscAI CASTG 1 cut(s) 471
TspDTI ATGAA 5 cut(s) 17, 122, 176, 273, 675
TspRI CASTG 1 cut(s) 471
XapI RAATTY 2 cut(s) 409, 681
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.