Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

36444055 .. 36446932

Gene Structure 2878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG219200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1731 bp

ATGGCTTCTTCGCTTGACAATGAAACGGTCTTTGCTCTTAGAAATTGTTTGATAAAATTTTTGAAGCAAGGAAATGACCTTGCTGTAGGTATCTGGTTTGAGAAAACCAATCCGAAAACTGTCATCTGGACAGCAAATCGTGATGCTGTTAAACAAGAGCCACTTCCTAATGATGTTCAATTGACTGTGAGGGACAGTGGAGTTGAGCTCAGTTCAACCAGCAAGAATGCCTTCCTTATTCCAATTTCAAATTCTTCCCAGCCTGCTGTCAGGGCCTCCATGCTTGATTCAGGTAACTTTGTCCTCTACAATTCTGATTCAAACATCATTTGGCAGACTTTTGATATTCCAACAGATACCATTGTATCCGGGCAGCGTCTGTTCGCGGGAACAAAGCTCATCTCCTCCATATCAAAGACGAATCACGCAAGTGGAAGATTTAAAGTGGTCATGCAGAGAGATGGCAACTTGGTTCAATATCCAAATATTGATCAATTTACATTGAGTTCTGATCAATATTCTTATTGGAACCCTGGGACATTCGGTGCTGGGAACAATGTGTCCCTCAATCTTGATCAAAATGGGGGGCTCTATCTTCTTAATTCCACTGGTTTAAAGATAAGAAGTTTTCCTCTTAAGAATGGCCTTTCTATGTATCGTAGCTATCGCCTGACGATTGATGCTGATGGCATACTCCGGTTGTACTCCTACAGTTTGGTTAAGAATAATTCCTGGTCAATTGAGTGGTCACCAACTGATAGTAAGTGTGCTCCTATTGGCCTCTGTGGCCTAAATTCTTACTGTGTTCTTGTGGATCAGGAGTCTTCTTGTGTATGTCTCCCTGGTTTCGTTTTCATCGACGAGGGCCAAAAATATTTAGGCTGCAAGAGAAACTTGAGTACAGTTGGTTGCAAAGGTGAGAATGAAACTTCATATTCTATTGTTGATGTCGATAACATAAATTGGGAAAGCACTCCATACTCTGTTCTATCATTGGATAAGACTGCTTGTAAAGAGGAATGTTTGATGGATCGTAACTGTGAAGCTGCGATATTTACGGACCAGCAGTGCAGAAAACAAAAGCTCCCTCTAAGATTTGGAAGAACTCCCCAACGCGCTGTGGTGACAACCTTTGTCAAAAAGGGTACTACTGATGAGAGTTCAGGTGCAAAATGGTTGAGCAAGGGAAGAAAAAATGTTGACAGAGTCATATTTATCAGCAGCATTGCAACTTTAACTTTTTCACTGGTTATTATGGCAATTACTGGTGTTGTTATATATAGATATCGTGTTTGGGATTACCGAAGGGTTACAAATTCTGCTGGTGAAGGGTTAATTGAAGGTGTTACACTGCGGTCATATAAATATTGTGAACTTGAAAAGGCAACCAAAGGCTTCACCAATCAAGTGGGAAAAGGAGCTTTTGGGACAGTTTTTAAAGGGGTGATTGGTGGGAGAGAAGTGGCAATCAAGCAACTAGAGACAGTGGTGGATGAAGGGGAGCGAGAGTTTCGTAATGAGATGAATGCCAATGAACTGGATAAGCTAGTGAAGGATGATGATGAGATTGACATGAGTAAACTACGGGAGATGGTTAAGCTTGGTCTCTGCTGCATCCAGGAGGAGCCATCATTGCGCCCTTCGATGAAGAAGGTGGTACTAATGCTGGAAGGGATTCTGGAGATACCATCACCTCCGATCCAAATTCTTTCAGTTCCAGACATTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

576

Amino Acids

64.14

Weight (kDa)

7.32

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	40 - 128	2e-12	D-mannose binding lectin
S_locus_glycop	PF00954	220 - 284	1e-06	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	386, 1116
AciI	CCGC	2 cut(s)	386, 1354
AclWI	GGATC	3 cut(s)	822, 1038, 1693
AcsI	RAATTY	5 cut(s)	56, 250, 793, 1315, 1704
AfaI	GTAC	4 cut(s)	704, 901, 1147, 1659
AflII	CTTAAG	1 cut(s)	635
AgsI	TTSAA	8 cut(s)	64, 179, 216, 249, 321, 476, 1340, 1379
AjnI	CCWGG	4 cut(s)	532, 731, 841, 1617
AjuI	GAANNNNNNNTTGG	2 cut(s)	235, 267
AleI	CACNNNNGTG	1 cut(s)	429
AloI	GAACNNNNNNTCC	2 cut(s)	545, 577
AluBI	AGCT	8 cut(s)	208, 397, 663, 1046, 1084, 1421, 1546, 1600
AluI	AGCT	8 cut(s)	208, 397, 663, 1046, 1084, 1421, 1546, 1600
Alw21I	GWGCWC	2 cut(s)	210, 772
Alw26I	GTCTC	3 cut(s)	842, 1475, 1610
AlwI	GGATC	3 cut(s)	822, 1038, 1693
AlwNI	CAGNNNCTG	1 cut(s)	379
AoxI	GGCC	5 cut(s)	273, 643, 778, 787, 865
ApeKI	GCWGC	5 cut(s)	373, 882, 1046, 1221, 1611
ApoI	RAATTY	5 cut(s)	56, 250, 793, 1315, 1704
Asp700I	GAANNNNTTC	2 cut(s)	230, 1674
AspLEI	GCGC	2 cut(s)	1118, 1638
AspS9I	GGNCC	3 cut(s)	273, 865, 1060
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	7 cut(s)	741, 929, 1135, 1337, 1390, 1456, 1683
AvaII	GGWCC	1 cut(s)	1060
BaeI	ACNNNNGTAYC	4 cut(s)	348, 348, 381, 381
BanII	GRGCYC	2 cut(s)	210, 591
BbsI	GAAGAC	1 cut(s)	816
Bbv12I	GWGCWC	2 cut(s)	210, 772
BbvI	GCAGC	5 cut(s)	385, 869, 1033, 1233, 1598
BccI	CCATC	6 cut(s)	455, 680, 1021, 1585, 1636, 1696
BciT130I	CCWGG	4 cut(s)	534, 733, 843, 1619
BciVI	GTATCC	1 cut(s)	376
BclI	TGATCA	3 cut(s)	490, 511, 574
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	3 cut(s)	842, 1475, 1610
BfaI	CTAG	2 cut(s)	1478, 1547
BfmI	CTRYAG	2 cut(s)	84, 709
BfrI	CTTAAG	1 cut(s)	635
BfuI	GTATCC	1 cut(s)	376
BglI	GCCNNNNNGGC	1 cut(s)	786
BisI	GCNGC	5 cut(s)	374, 883, 1047, 1222, 1612
BlsI	GCNGC	5 cut(s)	375, 884, 1048, 1223, 1613
Bme1390I	CCNGG	5 cut(s)	370, 534, 733, 843, 1619
Bme18I	GGWCC	1 cut(s)	1060
BmgT120I	GGNCC	3 cut(s)	273, 865, 1060
BmiI	GGNNCC	2 cut(s)	530, 1626
BmrFI	CCNGG	5 cut(s)	370, 534, 733, 843, 1619
BmsI	GCATC	3 cut(s)	133, 670, 1623
BpiI	GAAGAC	1 cut(s)	816
BplI	GAGNNNNNCTC	2 cut(s)	192, 224
BpmI	CTGGAG	1 cut(s)	1700
BpuEI	CTTGAG	1 cut(s)	916
BpuMI	CCSGG	1 cut(s)	370
BsaI	GGTCTC	1 cut(s)	1610
BsaJI	CCNNGG	3 cut(s)	532, 533, 841
BsaWI	WCCGGW	1 cut(s)	696
BsaXI	ACNNNNNCTCC	4 cut(s)	1068, 1098, 1493, 1523
Bse1I	ACTGG	4 cut(s)	613, 1251, 1270, 1542
Bse3DI	GCAATG	2 cut(s)	1224, 1631
BseBI	CCWGG	4 cut(s)	534, 733, 843, 1619
BseDI	CCNNGG	3 cut(s)	532, 533, 841
BseGI	GGATG	3 cut(s)	1498, 1561, 1614
BseMI	GCAATG	2 cut(s)	1224, 1631
BseMII	CTCAG	1 cut(s)	223
BseNI	ACTGG	4 cut(s)	613, 1251, 1270, 1542
BseRI	GAGGAG	2 cut(s)	394, 1637
BseXI	GCAGC	5 cut(s)	385, 869, 1033, 1233, 1598
BseYI	CCCAGC	2 cut(s)	258, 548
BsgI	GTGCAG	1 cut(s)	1090
Bsh1236I	CGCG	2 cut(s)	386, 1116
BshFI	GGCC	5 cut(s)	275, 645, 780, 789, 867
BsiHKAI	GWGCWC	2 cut(s)	210, 772
BsiSI	CCGG	2 cut(s)	369, 697
BslFI	GGGAC	4 cut(s)	206, 547, 550, 1441
BsmAI	GTCTC	3 cut(s)	842, 1475, 1610
BsmFI	GGGAC	4 cut(s)	206, 547, 550, 1441
BsmI	GAATGC	2 cut(s)	232, 1531
BsnI	GGCC	5 cut(s)	275, 645, 780, 789, 867
Bso31I	GGTCTC	1 cut(s)	1610
Bsp1286I	GDGCHC	3 cut(s)	210, 591, 772
Bsp143I	GATC	6 cut(s)	490, 511, 574, 814, 1030, 1698
BspACI	CCGC	2 cut(s)	386, 1354
BspANI	GGCC	5 cut(s)	275, 645, 780, 789, 867
BspCNI	CTCAG	1 cut(s)	222
BspFNI	CGCG	2 cut(s)	386, 1116
BspLI	GGNNCC	2 cut(s)	530, 1626
BspPI	GGATC	3 cut(s)	822, 1038, 1693
BspTI	CTTAAG	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	1610
BsrDI	GCAATG	2 cut(s)	1224, 1631
BsrI	ACTGG	4 cut(s)	613, 1251, 1270, 1542
BssECI	CCNNGG	3 cut(s)	532, 533, 841
BssMI	GATC	6 cut(s)	490, 511, 574, 814, 1030, 1698
Bst2UI	CCWGG	4 cut(s)	534, 733, 843, 1619
BstAFI	CTTAAG	1 cut(s)	635
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	3 cut(s)	38, 209, 1091
BstEII	GGTNACC	1 cut(s)	747
BstF5I	GGATG	3 cut(s)	1498, 1561, 1614
BstFNI	CGCG	2 cut(s)	386, 1116
BstHHI	GCGC	2 cut(s)	1118, 1638
BstKTI	GATC	6 cut(s)	493, 514, 577, 817, 1033, 1701
BstMAI	GTCTC	3 cut(s)	842, 1475, 1610
BstMBI	GATC	6 cut(s)	490, 511, 574, 814, 1030, 1698
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 786, 1633
BstNI	CCWGG	4 cut(s)	534, 733, 843, 1619
BstPI	GGTNACC	1 cut(s)	747
BstSCI	CCNGG	5 cut(s)	368, 532, 731, 841, 1617
BstSFI	CTRYAG	2 cut(s)	84, 709
BstUI	CGCG	2 cut(s)	386, 1116
BstV1I	GCAGC	5 cut(s)	385, 869, 1033, 1233, 1598
BstV2I	GAAGAC	1 cut(s)	816
BstXI	CCANNNNNNTGG	2 cut(s)	1408, 1537
BsuI	GTATCC	1 cut(s)	376
BsuRI	GGCC	5 cut(s)	275, 645, 780, 789, 867
BtsCI	GGATG	3 cut(s)	1498, 1561, 1614
BtsI	GCAGTG	2 cut(s)	1073, 1349
BtsIMutI	CAGTG	6 cut(s)	202, 606, 1073, 1244, 1349, 1491
Cac8I	GCNNGC	1 cut(s)	264
CaiI	CAGNNNCTG	1 cut(s)	379
CfoI	GCGC	2 cut(s)	1118, 1638
Cfr13I	GGNCC	3 cut(s)	273, 865, 1060
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	4 cut(s)	703, 900, 1146, 1658
CviAII	CATG	3 cut(s)	280, 451, 1573
CviQI	GTAC	4 cut(s)	703, 900, 1146, 1658
DdeI	CTNAG	3 cut(s)	38, 209, 1091
DpnI	GATC	6 cut(s)	492, 513, 576, 816, 1032, 1700
DpnII	GATC	6 cut(s)	490, 511, 574, 814, 1030, 1698
DraI	TTTAAA	3 cut(s)	442, 615, 1438
Ecl136II	GAGCTC	1 cut(s)	208
Eco24I	GRGCYC	2 cut(s)	210, 591
Eco31I	GGTCTC	1 cut(s)	1610
Eco32I	GATATC	1 cut(s)	1286
Eco47I	GGWCC	1 cut(s)	1060
Eco53kI	GAGCTC	1 cut(s)	208
Eco91I	GGTNACC	1 cut(s)	747
EcoICRI	GAGCTC	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	273
EcoO65I	GGTNACC	1 cut(s)	747
EcoRII	CCWGG	4 cut(s)	532, 731, 841, 1617
EcoRV	GATATC	1 cut(s)	1286
EcoT38I	GRGCYC	2 cut(s)	210, 591
FaeI	CATG	3 cut(s)	283, 454, 1576
FalI	AAGNNNNNCTT	6 cut(s)	147, 179, 215, 247, 878, 910
FaqI	GGGAC	4 cut(s)	206, 547, 550, 1441
FatI	CATG	3 cut(s)	279, 450, 1572
FauI	CCCGC	1 cut(s)	379
FbaI	TGATCA	3 cut(s)	490, 511, 574
Fnu4HI	GCNGC	5 cut(s)	374, 883, 1047, 1222, 1612
FokI	GGATG	3 cut(s)	1505, 1568, 1601
FriOI	GRGCYC	2 cut(s)	210, 591
Fsp4HI	GCNGC	5 cut(s)	374, 883, 1047, 1222, 1612
FspBI	CTAG	2 cut(s)	1478, 1547
GlaI	GCGC	2 cut(s)	1117, 1637
GluI	GCNGC	5 cut(s)	374, 883, 1047, 1222, 1612
GsaI	CCCAGC	2 cut(s)	262, 552
GsuI	CTGGAG	1 cut(s)	1700
HaeIII	GGCC	5 cut(s)	275, 645, 780, 789, 867
HapII	CCGG	2 cut(s)	369, 697
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	2 cut(s)	1118, 1638
Hin1II	CATG	3 cut(s)	283, 454, 1576
Hin6I	GCGC	2 cut(s)	1116, 1636
HinP1I	GCGC	2 cut(s)	1116, 1636
HincII	GTYRAC	1 cut(s)	1201
HindII	GTYRAC	1 cut(s)	1201
HindIII	AAGCTT	1 cut(s)	1598
HinfI	GANTC	6 cut(s)	287, 317, 421, 821, 1206, 1675
HpaII	CCGG	2 cut(s)	369, 697
HphI	GGTGA	7 cut(s)	741, 929, 1135, 1337, 1390, 1456, 1683
Hpy166II	GTNNAC	3 cut(s)	1201, 1373, 1580
Hpy188I	TCNGA	4 cut(s)	114, 316, 511, 1698
Hpy188III	TCNNGA	6 cut(s)	127, 140, 572, 818, 1679, 1718
Hpy8I	GTNNAC	3 cut(s)	1201, 1373, 1580
Hpy99I	CGWCG	1 cut(s)	863
HpyAV	CCTTC	9 cut(s)	241, 1299, 1322, 1334, 1490, 1546, 1645, 1650, 1664
HpyCH4V	TGCA	7 cut(s)	454, 885, 912, 1071, 1169, 1229, 1614
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 786, 1633
HpyF3I	CTNAG	3 cut(s)	38, 209, 1091
Hsp92II	CATG	3 cut(s)	283, 454, 1576
HspAI	GCGC	2 cut(s)	1116, 1636
Ksp22I	TGATCA	3 cut(s)	490, 511, 574
Kzo9I	GATC	6 cut(s)	490, 511, 574, 814, 1030, 1698
LmnI	GCTCC	5 cut(s)	775, 1089, 1418, 1501, 1624
Lsp1109I	GCAGC	5 cut(s)	385, 869, 1033, 1233, 1598
LweI	GCATC	3 cut(s)	133, 670, 1623
MaeI	CTAG	2 cut(s)	1478, 1547
MaeIII	GTNAC	6 cut(s)	293, 747, 1034, 1123, 1309, 1345
MalI	GATC	6 cut(s)	492, 513, 576, 816, 1032, 1700
MboI	GATC	6 cut(s)	490, 511, 574, 814, 1030, 1698
MboII	GAAGA	7 cut(s)	246, 447, 587, 816, 1113, 1200, 1660
MfeI	CAATTG	2 cut(s)	179, 738
MhlI	GDGCHC	3 cut(s)	210, 591, 772
MlyI	GAGTC	2 cut(s)	830, 1215
MmeI	TCCRAC	1 cut(s)	374
MroXI	GAANNNNTTC	2 cut(s)	230, 1674
MslI	CAYNNNNRTG	1 cut(s)	429
MspCI	CTTAAG	1 cut(s)	635
MspI	CCGG	2 cut(s)	369, 697
MspR9I	CCNGG	5 cut(s)	370, 534, 733, 843, 1619
MunI	CAATTG	2 cut(s)	179, 738
Mva1269I	GAATGC	2 cut(s)	232, 1531
MvaI	CCWGG	4 cut(s)	534, 733, 843, 1619
MvnI	CGCG	2 cut(s)	386, 1116
MwoI	GCNNNNNNNGC	3 cut(s)	272, 786, 1633
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	6 cut(s)	490, 511, 574, 814, 1030, 1698
NlaIII	CATG	3 cut(s)	283, 454, 1576
NlaIV	GGNNCC	2 cut(s)	530, 1626
NmuCI	GTSAC	2 cut(s)	747, 1123
OliI	CACNNNNGTG	1 cut(s)	429
PasI	CCCWGGG	1 cut(s)	533
PcsI	WCGNNNNNNNCGW	1 cut(s)	855
PctI	GAATGC	2 cut(s)	232, 1531
PdmI	GAANNNNTTC	2 cut(s)	230, 1674
PfeI	GAWTC	4 cut(s)	287, 317, 421, 1675
PflFI	GACNNNGTC	1 cut(s)	1205
PfoI	TCCNGGA	1 cut(s)	1617
PkrI	GCNGC	5 cut(s)	375, 884, 1048, 1223, 1613
PleI	GAGTC	2 cut(s)	829, 1214
PpsI	GAGTC	2 cut(s)	829, 1214
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	4 cut(s)	532, 731, 841, 1617
PspEI	GGTNACC	1 cut(s)	747
PspFI	CCCAGC	2 cut(s)	258, 548
PspGI	CCWGG	4 cut(s)	532, 731, 841, 1617
PspN4I	GGNNCC	2 cut(s)	530, 1626
PspPI	GGNCC	3 cut(s)	273, 865, 1060
PstNI	CAGNNNCTG	1 cut(s)	379
PsyI	GACNNNGTC	1 cut(s)	1205
RsaI	GTAC	4 cut(s)	704, 901, 1147, 1659
RsaNI	GTAC	4 cut(s)	703, 900, 1146, 1658
RseI	CAYNNNNRTG	1 cut(s)	429
SacI	GAGCTC	1 cut(s)	210
SatI	GCNGC	5 cut(s)	374, 883, 1047, 1222, 1612
Sau3AI	GATC	6 cut(s)	490, 511, 574, 814, 1030, 1698
Sau96I	GGNCC	3 cut(s)	273, 865, 1060
SchI	GAGTC	2 cut(s)	830, 1215
ScrFI	CCNGG	5 cut(s)	370, 534, 733, 843, 1619
SduI	GDGCHC	3 cut(s)	210, 591, 772
SfaNI	GCATC	3 cut(s)	133, 670, 1623
SfcI	CTRYAG	2 cut(s)	84, 709
SfiI	GGCCNNNNNGGCC	1 cut(s)	786
SinI	GGWCC	1 cut(s)	1060
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	2 cut(s)	635, 895
SmoI	CTYRAG	2 cut(s)	635, 895
SsiI	CCGC	2 cut(s)	386, 1354
SspI	AATATT	4 cut(s)	487, 518, 875, 1367
SspMI	CTAG	2 cut(s)	1478, 1547
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	5 cut(s)	368, 532, 731, 841, 1617
TaqI	TCGA	3 cut(s)	858, 951, 1643
TatI	WGTACW	2 cut(s)	702, 899
TfiI	GAWTC	4 cut(s)	287, 317, 421, 1675
TscAI	CASTG	6 cut(s)	202, 613, 1073, 1251, 1356, 1491
TseFI	GTSAC	2 cut(s)	747, 1123
TseI	GCWGC	5 cut(s)	373, 882, 1046, 1221, 1611
Tsp45I	GTSAC	2 cut(s)	747, 1123
TspDTI	ATGAA	8 cut(s)	36, 844, 921, 939, 1509, 1538, 1548, 1661
TspGWI	ACGGA	1 cut(s)	1073
TspRI	CASTG	6 cut(s)	202, 613, 1073, 1251, 1356, 1491
Tth111I	GACNNNGTC	1 cut(s)	1205
Vha464I	CTTAAG	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	1060
XapI	RAATTY	5 cut(s)	56, 250, 793, 1315, 1704
XmnI	GAANNNNTTC	2 cut(s)	230, 1674
XspI	CTAG	2 cut(s)	1478, 1547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.