Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

42129380 .. 42133028

Gene Structure 3649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG250800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGGGAATTGCTGGTTTTCTTCTTCTTCAGCTGAAGACCCAACACCAACTACTACTGGTCATCTCAGTACAGTGCCGAGTAGCATATCTCAATCAATTAGTAATGCCACATCCACTTCCGTGGGGAGCACTATATCAAGGAATAGCCAGTTTTCGGAGAGAAGTGGTGATGAGACCTGTCCAGATGGGCAGATCCTACCCGCCGCAAACTTGAGGATCTTCAGTTACCTAGAATTGAAGAGTGCAACTAGAAACTTTAGATCAGACACGGTGCTTGGGGAAGGAGGTTTTGGGAAGGTCTATAAAGGCTGGCTCGAGGAGAGGGCACCGACCAAGTCTGGAAAGACAACTGTAATTGCTGTAAAGAAATTGAATTCAGAGAGCTTGCAAGGTTTTGAGGAATGGCAGTCAGAGGTGAATTTCTTGGGGCGACTTTCTCATCCTAATCTTGTAAAGCTGCTGGGATACTGTTGGGAGGAGAAAGAACTGCTGCTTATCTACGAGTTCATGCAAAAAGGAAGCTTGGAAAACCATCTTTTTGGAAGGGGTTCAGTTGTTCAGCCACTTCCATGGGATATACGGCTTAAAGTTGCAATAGGAGCAGCTCGAGGCCTAGCATTTTTGCATACATCAGAGAAGCAAGTAATCTATAGAGATTTCAAAGCTTCCAATATATTACTTGATGGGTCCTTTACCGCCAAGATATCCGACTTTGGCTTGGCAAAATTTGGTCCTTCAGAGAGTCAATCACACGTGACAACCCGGGTCATGGGCACATATGGTTACGCTGCTCCTGAGTATGTTGCCACAGGTAATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

273

Amino Acids

29.85

Weight (kDa)

6.97

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	88 - 269	3.3e-33	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	89 - 270	2.7e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	325
AciI	CCGC	3 cut(s)	201, 204, 696
AclWI	GGATC	2 cut(s)	187, 224
AcsI	RAATTY	3 cut(s)	373, 418, 725
AcuI	CTGAAG	4 cut(s)	12, 54, 205, 720
AcvI	CACGTG	1 cut(s)	754
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	2 cut(s)	154, 769
AflIII	ACRYGT	1 cut(s)	751
AgsI	TTSAA	3 cut(s)	238, 373, 661
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AleI	CACNNNNGTG	1 cut(s)	119
AluBI	AGCT	6 cut(s)	32, 384, 457, 522, 605, 665
AluI	AGCT	6 cut(s)	32, 384, 457, 522, 605, 665
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	2 cut(s)	187, 224
Ama87I	CYCGRG	3 cut(s)	314, 606, 762
AoxI	GGCC	1 cut(s)	610
ApeKI	GCWGC	4 cut(s)	457, 490, 602, 788
ApoI	RAATTY	3 cut(s)	373, 418, 725
Asp700I	GAANNNNTTC	1 cut(s)	547
AspS9I	GGNCC	2 cut(s)	687, 731
AsuC2I	CCSGG	2 cut(s)	763, 764
AsuHPI	GGTGA	2 cut(s)	179, 427
AvaI	CYCGRG	3 cut(s)	314, 606, 762
AvaII	GGWCC	2 cut(s)	687, 731
BaeGI	GKGCMC	2 cut(s)	328, 776
BanI	GGYRCC	1 cut(s)	325
BbrPI	CACGTG	1 cut(s)	754
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	131
BbvI	GCAGC	4 cut(s)	444, 477, 614, 775
BccI	CCATC	3 cut(s)	179, 540, 677
BceAI	ACGGC	1 cut(s)	596
BciVI	GTATCC	1 cut(s)	458
BcnI	CCSGG	2 cut(s)	763, 764
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	3 cut(s)	230, 249, 614
BfmI	CTRYAG	1 cut(s)	649
BfuI	GTATCC	1 cut(s)	458
BisI	GCNGC	5 cut(s)	204, 458, 491, 603, 789
BlsI	GCNGC	5 cut(s)	205, 459, 492, 604, 790
Bme1390I	CCNGG	2 cut(s)	763, 764
Bme18I	GGWCC	2 cut(s)	687, 731
BmeT110I	CYCGRG	3 cut(s)	314, 606, 762
BmgT120I	GGNCC	2 cut(s)	687, 731
BmiI	GGNNCC	2 cut(s)	327, 688
BmrFI	CCNGG	2 cut(s)	763, 764
BpiI	GAAGAC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	232
BpuMI	CCSGG	2 cut(s)	763, 764
BsaAI	YACGTR	1 cut(s)	754
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	3 cut(s)	120, 569, 762
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 769
Bse1I	ACTGG	2 cut(s)	61, 148
BseDI	CCNNGG	3 cut(s)	120, 569, 762
BseGI	GGATG	2 cut(s)	110, 439
BseLI	CCNNNNNNNGG	2 cut(s)	154, 769
BseMII	CTCAG	2 cut(s)	79, 786
BseNI	ACTGG	2 cut(s)	61, 148
BseRI	GAGGAG	2 cut(s)	332, 491
BseSI	GKGCMC	2 cut(s)	328, 776
BseXI	GCAGC	4 cut(s)	444, 477, 614, 775
BseYI	CCCAGC	1 cut(s)	460
BshFI	GGCC	1 cut(s)	612
BshNI	GGYRCC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	131
BsiHKCI	CYCGRG	3 cut(s)	314, 606, 762
BsiSI	CCGG	1 cut(s)	763
BslI	CCNNNNNNNGG	2 cut(s)	154, 769
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	612
Bso31I	GGTCTC	1 cut(s)	167
BsoBI	CYCGRG	3 cut(s)	314, 606, 762
Bsp1286I	GDGCHC	3 cut(s)	131, 328, 776
Bsp143I	GATC	3 cut(s)	192, 216, 260
Bsp19I	CCATGG	1 cut(s)	569
BspACI	CCGC	3 cut(s)	201, 204, 696
BspANI	GGCC	1 cut(s)	612
BspCNI	CTCAG	2 cut(s)	78, 787
BspLI	GGNNCC	2 cut(s)	327, 688
BspPI	GGATC	2 cut(s)	187, 224
BspT107I	GGYRCC	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	167
BsrI	ACTGG	2 cut(s)	61, 148
BssECI	CCNNGG	3 cut(s)	120, 569, 762
BssMI	GATC	3 cut(s)	192, 216, 260
BssT1I	CCWWGG	1 cut(s)	569
Bst4CI	ACNGT	4 cut(s)	73, 271, 352, 470
Bst6I	CTCTTC	1 cut(s)	233
BstBAI	YACGTR	1 cut(s)	754
BstC8I	GCNNGC	2 cut(s)	311, 386
BstDEI	CTNAG	2 cut(s)	65, 795
BstDSI	CCRYGG	2 cut(s)	120, 569
BstF5I	GGATG	2 cut(s)	110, 439
BstKTI	GATC	3 cut(s)	195, 219, 263
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	3 cut(s)	192, 216, 260
BstMWI	GCNNNNNNNGC	1 cut(s)	599
BstSCI	CCNGG	2 cut(s)	761, 762
BstSFI	CTRYAG	1 cut(s)	649
BstSLI	GKGCMC	2 cut(s)	328, 776
BstV1I	GCAGC	4 cut(s)	444, 477, 614, 775
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	2 cut(s)	192, 216
BstXI	CCANNNNNNTGG	3 cut(s)	121, 539, 570
BstYI	RGATCY	2 cut(s)	192, 216
BsuI	GTATCC	1 cut(s)	458
BsuRI	GGCC	1 cut(s)	612
BtgI	CCRYGG	2 cut(s)	120, 569
BtsCI	GGATG	2 cut(s)	110, 439
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	311, 386
Cfr13I	GGNCC	2 cut(s)	687, 731
Cfr9I	CCCGGG	1 cut(s)	762
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	3 cut(s)	508, 570, 769
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	2 cut(s)	65, 795
DpnI	GATC	3 cut(s)	194, 218, 262
DpnII	GATC	3 cut(s)	192, 216, 260
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco130I	CCWWGG	1 cut(s)	569
Eco147I	AGGCCT	1 cut(s)	612
Eco31I	GGTCTC	1 cut(s)	167
Eco32I	GATATC	1 cut(s)	705
Eco47I	GGWCC	2 cut(s)	687, 731
Eco57I	CTGAAG	4 cut(s)	12, 54, 205, 720
Eco72I	CACGTG	1 cut(s)	754
Eco88I	CYCGRG	3 cut(s)	314, 606, 762
EcoO109I	RGGNCCY	1 cut(s)	687
EcoRI	GAATTC	1 cut(s)	373
EcoRV	GATATC	1 cut(s)	705
EcoT14I	CCWWGG	1 cut(s)	569
ErhI	CCWWGG	1 cut(s)	569
FaeI	CATG	3 cut(s)	511, 573, 772
FatI	CATG	3 cut(s)	507, 569, 768
FauI	CCCGC	1 cut(s)	208
FauNDI	CATATG	1 cut(s)	778
Fnu4HI	GCNGC	5 cut(s)	204, 458, 491, 603, 789
FokI	GGATG	2 cut(s)	97, 426
Fsp4HI	GCNGC	5 cut(s)	204, 458, 491, 603, 789
FspBI	CTAG	3 cut(s)	230, 249, 614
GluI	GCNGC	5 cut(s)	204, 458, 491, 603, 789
GsaI	CCCAGC	1 cut(s)	464
HaeIII	GGCC	1 cut(s)	612
HapII	CCGG	1 cut(s)	763
Hin1II	CATG	3 cut(s)	511, 573, 772
HindIII	AAGCTT	2 cut(s)	520, 663
HinfI	GANTC	1 cut(s)	742
HpaII	CCGG	1 cut(s)	763
HphI	GGTGA	2 cut(s)	179, 427
Hpy188I	TCNGA	7 cut(s)	157, 265, 379, 412, 634, 709, 739
Hpy188III	TCNNGA	3 cut(s)	182, 339, 794
HpyAV	CCTTC	4 cut(s)	275, 289, 537, 744
HpyCH4III	ACNGT	4 cut(s)	73, 271, 352, 470
HpyCH4IV	ACGT	1 cut(s)	753
HpyCH4V	TGCA	5 cut(s)	245, 388, 511, 593, 625
HpyF10VI	GCNNNNNNNGC	1 cut(s)	599
HpyF3I	CTNAG	2 cut(s)	65, 795
HpySE526I	ACGT	1 cut(s)	753
Hsp92II	CATG	3 cut(s)	511, 573, 772
Kzo9I	GATC	3 cut(s)	192, 216, 260
LmnI	GCTCC	3 cut(s)	126, 599, 796
Lsp1109I	GCAGC	4 cut(s)	444, 477, 614, 775
MaeI	CTAG	3 cut(s)	230, 249, 614
MaeII	ACGT	1 cut(s)	753
MaeIII	GTNAC	3 cut(s)	224, 754, 782
MalI	GATC	3 cut(s)	194, 218, 262
MboI	GATC	3 cut(s)	192, 216, 260
MboII	GAAGA	6 cut(s)	12, 15, 18, 47, 211, 250
MflI	RGATCY	2 cut(s)	192, 216
MhlI	GDGCHC	3 cut(s)	131, 328, 776
MluCI	AATT	8 cut(s)	7, 96, 233, 354, 368, 373, 418, 725
MlyI	GAGTC	1 cut(s)	751
MmeI	TCCRAC	1 cut(s)	732
MnlI	CCTC	8 cut(s)	207, 278, 310, 315, 391, 406, 469, 602
MroXI	GAANNNNTTC	1 cut(s)	547
MseI	TTAA	2 cut(s)	585, 820
MslI	CAYNNNNRTG	2 cut(s)	119, 568
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	1 cut(s)	763
MspR9I	CCNGG	2 cut(s)	763, 764
MwoI	GCNNNNNNNGC	1 cut(s)	599
NciI	CCSGG	2 cut(s)	763, 764
NcoI	CCATGG	1 cut(s)	569
NdeI	CATATG	1 cut(s)	778
NdeII	GATC	3 cut(s)	192, 216, 260
NlaIII	CATG	3 cut(s)	511, 573, 772
NlaIV	GGNNCC	2 cut(s)	327, 688
NmeAIII	GCCGAG	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	754
OliI	CACNNNNGTG	1 cut(s)	119
PaeR7I	CTCGAG	2 cut(s)	314, 606
PceI	AGGCCT	1 cut(s)	612
PdmI	GAANNNNTTC	1 cut(s)	547
PflFI	GACNNNGTC	1 cut(s)	334
PkrI	GCNGC	5 cut(s)	205, 459, 492, 604, 790
PleI	GAGTC	1 cut(s)	750
PmaCI	CACGTG	1 cut(s)	754
PmlI	CACGTG	1 cut(s)	754
PpsI	GAGTC	1 cut(s)	750
Ppu21I	YACGTR	1 cut(s)	754
PpuMI	RGGWCCY	1 cut(s)	687
Psp5II	RGGWCCY	1 cut(s)	687
PspCI	CACGTG	1 cut(s)	754
PspFI	CCCAGC	1 cut(s)	460
PspN4I	GGNNCC	2 cut(s)	327, 688
PspPI	GGNCC	2 cut(s)	687, 731
PspPPI	RGGWCCY	1 cut(s)	687
PspXI	VCTCGAGB	2 cut(s)	314, 606
PsuI	RGATCY	2 cut(s)	192, 216
PsyI	GACNNNGTC	1 cut(s)	334
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
RseI	CAYNNNNRTG	2 cut(s)	119, 568
SaqAI	TTAA	2 cut(s)	585, 820
SatI	GCNGC	5 cut(s)	204, 458, 491, 603, 789
Sau3AI	GATC	3 cut(s)	192, 216, 260
Sau96I	GGNCC	2 cut(s)	687, 731
SchI	GAGTC	1 cut(s)	751
ScrFI	CCNGG	2 cut(s)	763, 764
SduI	GDGCHC	3 cut(s)	131, 328, 776
SfcI	CTRYAG	1 cut(s)	649
Sfr274I	CTCGAG	2 cut(s)	314, 606
SinI	GGWCC	2 cut(s)	687, 731
SlaI	CTCGAG	2 cut(s)	314, 606
SmaI	CCCGGG	1 cut(s)	764
SmiMI	CAYNNNNRTG	2 cut(s)	119, 568
SmlI	CTYRAG	3 cut(s)	211, 314, 606
SmoI	CTYRAG	3 cut(s)	211, 314, 606
Sse9I	AATT	8 cut(s)	7, 96, 233, 354, 368, 373, 418, 725
SseBI	AGGCCT	1 cut(s)	612
SsiI	CCGC	3 cut(s)	201, 204, 696
SspMI	CTAG	3 cut(s)	230, 249, 614
StuI	AGGCCT	1 cut(s)	612
StyD4I	CCNGG	2 cut(s)	761, 762
StyI	CCWWGG	1 cut(s)	569
TaaI	ACNGT	4 cut(s)	73, 271, 352, 470
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	2 cut(s)	315, 607
TasI	AATT	8 cut(s)	7, 96, 233, 354, 368, 373, 418, 725
TatI	WGTACW	1 cut(s)	68
TauI	GCSGC	1 cut(s)	206
Tru1I	TTAA	2 cut(s)	585, 820
Tru9I	TTAA	2 cut(s)	585, 820
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	754
TseI	GCWGC	4 cut(s)	457, 490, 602, 788
Tsp45I	GTSAC	1 cut(s)	754
TspDTI	ATGAA	1 cut(s)	496
TspGWI	ACGGA	1 cut(s)	109
TspMI	CCCGGG	1 cut(s)	762
TspRI	CASTG	1 cut(s)	78
Tth111I	GACNNNGTC	1 cut(s)	334
VpaK11BI	GGWCC	2 cut(s)	687, 731
XapI	RAATTY	3 cut(s)	373, 418, 725
XhoI	CTCGAG	2 cut(s)	314, 606
XmaI	CCCGGG	1 cut(s)	762
XmnI	GAANNNNTTC	1 cut(s)	547
XspI	CTAG	3 cut(s)	230, 249, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.