Rh6CG253100

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
N/A
Physical Location & Seq
Forward (+)
42336389 .. 42336721
333 bp
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UTR
Exon/CDS
Intron
Rh6CG253100.1

Sequence Viewer

Length: 333 bp
ATGGAAGCTGTCGTTTCATCAGTTCTTGGAACACTAGCAGAGAACACAGTGGCACGGCTTCTGCGACAGTTTGGTAATCTGACTCACTATGAGAGTAACGTTGCTCGTCTCGATAATCAAATTAAGCAGCTGAAGGCCCAAAGAGACGGCGTGAAACTACAAATTGATCGATGCAGCGACCAGGAATTTAGAGACTATTCTTCCCGAAGTTCAGCTATGGTGGATCAAACCTTACAAGACAAGGAGACATGTTTTGAAAAAGAGCAAACAGCAAAGGCGGCATGGTGCTGGCAATGGAAGAAGAGCACATTTTCATCCCGTAGCACTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

110

Amino Acids

12.62

Weight (kDa)

8.5

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 278
AclI AACGTT 1 cut(s) 99
AclWI GGATC 1 cut(s) 231
AcsI RAATTY 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 152
AflIII ACRYGT 1 cut(s) 248
AgsI TTSAA 1 cut(s) 257
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 3 cut(s) 8, 130, 215
AluI AGCT 3 cut(s) 8, 130, 215
Alw21I GWGCWC 1 cut(s) 308
Alw26I GTCTC 4 cut(s) 113, 138, 186, 239
AlwI GGATC 1 cut(s) 231
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 2 cut(s) 127, 174
ApoI RAATTY 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 308
BbvI GCAGC 2 cut(s) 139, 186
BceAI ACGGC 2 cut(s) 71, 163
BciT130I CCWGG 1 cut(s) 182
BcoDI GTCTC 4 cut(s) 113, 138, 186, 239
BfaI CTAG 1 cut(s) 35
BisI GCNGC 3 cut(s) 128, 175, 279
BlsI GCNGC 3 cut(s) 129, 176, 280
Bme1390I CCNGG 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 161
Bsa29I ATCGAT 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 299
BseBI CCWGG 1 cut(s) 182
BseCI ATCGAT 1 cut(s) 169
BseGI GGATG 1 cut(s) 314
BseMI GCAATG 1 cut(s) 299
BseXI GCAGC 2 cut(s) 139, 186
BshFI GGCC 1 cut(s) 137
BshVI ATCGAT 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 308
BsmAI GTCTC 4 cut(s) 113, 138, 186, 239
BsmBI CGTCTC 2 cut(s) 113, 138
BsnI GGCC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 2 cut(s) 166, 223
BspACI CCGC 1 cut(s) 278
BspANI GGCC 1 cut(s) 137
BspDI ATCGAT 1 cut(s) 169
BspPI GGATC 1 cut(s) 231
BspQI GCTCTTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 299
BssMI GATC 2 cut(s) 166, 223
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 2 cut(s) 49, 69
Bst6I CTCTTC 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 290
BstF5I GGATG 1 cut(s) 314
BstKTI GATC 2 cut(s) 169, 226
BstMAI GTCTC 4 cut(s) 113, 138, 186, 239
BstMBI GATC 2 cut(s) 166, 223
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 1 cut(s) 182
BstNSI RCATGY 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 139, 186
Bsu15I ATCGAT 1 cut(s) 169
BsuRI GGCC 1 cut(s) 137
BsuTUI ATCGAT 1 cut(s) 169
BtsCI GGATG 1 cut(s) 314
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 136
ClaI ATCGAT 1 cut(s) 169
CviAII CATG 2 cut(s) 249, 282
CviJI RGCY 5 cut(s) 8, 58, 130, 137, 215
CviKI_1 RGCY 5 cut(s) 8, 58, 130, 137, 215
DpnI GATC 2 cut(s) 168, 225
DpnII GATC 2 cut(s) 166, 223
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco57I CTGAAG 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 180
Esp3I CGTCTC 2 cut(s) 113, 138
FaeI CATG 2 cut(s) 252, 285
FaiI YATR 4 cut(s) 90, 218, 250, 283
FatI CATG 2 cut(s) 248, 281
Fnu4HI GCNGC 3 cut(s) 128, 175, 279
FokI GGATG 1 cut(s) 301
Fsp4HI GCNGC 3 cut(s) 128, 175, 279
FspBI CTAG 1 cut(s) 35
GluI GCNGC 3 cut(s) 128, 175, 279
HaeIII GGCC 1 cut(s) 137
Hin1II CATG 2 cut(s) 252, 285
HinfI GANTC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 2 cut(s) 110, 204
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 2 cut(s) 49, 69
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 2 cut(s) 252, 285
Kzo9I GATC 2 cut(s) 166, 223
LguI GCTCTTC 1 cut(s) 296
LpnPI CCDG 3 cut(s) 167, 194, 274
Lsp1109I GCAGC 2 cut(s) 139, 186
LweI GCATC 1 cut(s) 161
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 95
MalI GATC 2 cut(s) 168, 225
MboI GATC 2 cut(s) 166, 223
MboII GAAGA 3 cut(s) 192, 310, 313
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 3 cut(s) 120, 162, 185
MlyI GAGTC 1 cut(s) 76
MseI TTAA 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 130
MspR9I CCNGG 1 cut(s) 182
MvaI CCWGG 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeII GATC 2 cut(s) 166, 223
NlaIII CATG 2 cut(s) 252, 285
NspI RCATGY 1 cut(s) 252
PciI ACATGT 1 cut(s) 248
PciSI GCTCTTC 1 cut(s) 296
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PkrI GCNGC 3 cut(s) 129, 176, 280
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PscI ACATGT 1 cut(s) 248
Psp1406I AACGTT 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspPI GGNCC 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 130
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 3 cut(s) 128, 175, 279
Sau3AI GATC 2 cut(s) 166, 223
Sau96I GGNCC 1 cut(s) 136
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 308
SetI ASST 5 cut(s) 10, 102, 132, 217, 233
SfaNI GCATC 1 cut(s) 161
Sse9I AATT 3 cut(s) 120, 162, 185
SsiI CCGC 1 cut(s) 278
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 180
TaaI ACNGT 2 cut(s) 49, 69
TaiI ACGT 1 cut(s) 102
TaqI TCGA 2 cut(s) 111, 169
TasI AATT 3 cut(s) 120, 162, 185
TauI GCSGC 1 cut(s) 281
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 54
TseI GCWGC 2 cut(s) 127, 174
TspDTI ATGAA 2 cut(s) 6, 303
TspRI CASTG 1 cut(s) 54
XapI RAATTY 1 cut(s) 185
XceI RCATGY 1 cut(s) 252
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.