Rh6CG303000
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
N/A
Physical Location & Seq
Forward (+)
48353241 .. 48359071
5831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG303000.1

Sequence Viewer

Length: 1083 bp
ATGGAGCATGTGATTGCTGGAAAGTTTAAGCTGGGGAGGAAGATTGGGAGTGGCTCTTTCGGAGAGCTCTATCTAGGTGTCAATGTACAAACCGGAGAGGAGGTTGCTGTGAAACTGGAACCTGTGAAGACCAAGCATCCCCAGCTTCACTATGAGTCCAAATTGTACATGCTTCTTCAGGGAGGAACGGGAATCCCCCACCTGAAGTGGTTTGGAGTTGAGGGTGACTACAATGTCATGGTTATTGATCTTCTGGGACCAAGTTTGGAAGATTTGTTCAACTATTGTAATAGGAAGTTTACATTGAAAACAGTTTTGATGCTTGCAGATCAATTAGTAAGTACTTTTGGCTATCCTTTACCATATGTTGAAAATGGCCCGGATTATAATTGTTTTTCCTTCTTCCACATTTCATCTTTTCAGATTAACAGAGTCGAGTACATGCACTCAAGAGGTTTCCTTCATCGTGATATAAAACCTGACAACTTCTTAATGGGCCTAGGGCGTAAAGCCAATCAGGTATATGCTATTGATTATGGCCTTGCAAAGAAGTATAGGGATCTCCAGACTCACAAACACATACCATACAGGGAGAACAAGAACCTCACAGGCACTGCCCGCTATGCAAGTGTTAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCACTTGGTTATGTGCTTATGTATTTCCTAAGAGGAAGCCTTCCCTGGCAAGGATTGAAGGCTGGCACAAAAAAGCAAAAATACGACAAAATCAGTGAAAAGAAAATGTCAACTCCTATAGAGGTGCTTTGCAGATCACATCCATCTGAGTTTGTATCCTACTTTCACTACTGCCGATCATTGCGGTTTGAAGACAAGCCGGATTATTCATACCTGAAGAGGCTTTTTCGAGACTTATTTATTCGAGAAGGTTATCAATTTGACTATGTATTTGACTGGACCGTACTGAAGTACCCCCAGATTGGTGGAAGCTCCAGAGGATGGCATTCCAGTGGAAAAGCAGGTGCAAATGCGGGACCATCTGGGGAAAGACCTGAAAGAGTCTCAGGTACTGTTTTCTCTTGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

360

Amino Acids

41.38

Weight (kDa)

9.23

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 10 - 299 1.6e-08 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 145 - 256 9.3e-14 Protein kinase domain
Pkinase_fungal PF17667 150 - 235 1.7e-07 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 387
AarI CACCTGC 1 cut(s) 1010
AasI GACNNNNNNGTC 1 cut(s) 233
Acc36I ACCTGC 1 cut(s) 1010
AccB7I CCANNNNNTGG 1 cut(s) 999
AciI CCGC 3 cut(s) 619, 862, 1031
AclWI GGATC 1 cut(s) 567
AcuI CTGAAG 4 cut(s) 161, 224, 914, 986
AfaI GTAC 7 cut(s) 87, 167, 343, 440, 963, 971, 1069
AfiI CCNNNNNNNGG 3 cut(s) 728, 980, 999
AgsI TTSAA 6 cut(s) 280, 307, 371, 653, 736, 869
AjnI CCWGG 1 cut(s) 722
AloI GAACNNNNNNTCC 2 cut(s) 260, 292
AluBI AGCT 4 cut(s) 31, 67, 145, 990
AluI AGCT 4 cut(s) 31, 67, 145, 990
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 2 cut(s) 903, 1066
AlwI GGATC 1 cut(s) 567
AlwNI CAGNNNCTG 2 cut(s) 614, 1070
AoxI GGCC 3 cut(s) 376, 496, 538
ArsI GACNNNNNNTTYG 2 cut(s) 932, 964
AspA2I CCTAGG 1 cut(s) 499
AspS9I GGNCC 5 cut(s) 257, 377, 496, 957, 1034
AsuC2I CCSGG 1 cut(s) 380
AsuHPI GGTGA 1 cut(s) 236
AvaII GGWCC 3 cut(s) 257, 957, 1034
AvrII CCTAGG 1 cut(s) 499
BaeI ACNNNNGTAYC 2 cut(s) 953, 986
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 2 cut(s) 134, 876
Bbv12I GWGCWC 1 cut(s) 69
BccI CCATC 3 cut(s) 829, 993, 1045
BciT130I CCWGG 1 cut(s) 724
BciVI GTATCC 1 cut(s) 844
BcnI CCSGG 1 cut(s) 380
BcoDI GTCTC 2 cut(s) 903, 1066
BfaI CTAG 2 cut(s) 74, 500
BfmI CTRYAG 1 cut(s) 795
BfuAI ACCTGC 1 cut(s) 1010
BfuI GTATCC 1 cut(s) 844
BlnI CCTAGG 1 cut(s) 499
BmcAI AGTACT 1 cut(s) 343
Bme1390I CCNGG 2 cut(s) 380, 724
Bme18I GGWCC 3 cut(s) 257, 957, 1034
BmgT120I GGNCC 5 cut(s) 257, 377, 496, 957, 1034
BmiI GGNNCC 3 cut(s) 120, 258, 1035
BmrFI CCNGG 2 cut(s) 380, 724
BmsI GCATC 2 cut(s) 145, 309
BpiI GAAGAC 2 cut(s) 134, 876
BpmI CTGGAG 2 cut(s) 548, 976
BpuEI CTTGAG 1 cut(s) 433
BpuMI CCSGG 1 cut(s) 380
BsaJI CCNNGG 2 cut(s) 499, 722
BsaWI WCCGGW 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 3 cut(s) 728, 980, 999
Bse1I ACTGG 3 cut(s) 120, 959, 1008
Bse3DI GCAATG 1 cut(s) 857
BseBI CCWGG 1 cut(s) 724
BseDI CCNNGG 2 cut(s) 499, 722
BseGI GGATG 4 cut(s) 136, 673, 817, 1004
BseLI CCNNNNNNNGG 3 cut(s) 728, 980, 999
BseMI GCAATG 1 cut(s) 857
BseMII CTCAG 2 cut(s) 816, 1077
BseNI ACTGG 3 cut(s) 120, 959, 1008
BseRI GAGGAG 1 cut(s) 113
BseYI CCCAGC 2 cut(s) 31, 141
BshFI GGCC 3 cut(s) 378, 498, 540
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 3 cut(s) 93, 380, 878
BslFI GGGAC 2 cut(s) 270, 1047
BslI CCNNNNNNNGG 3 cut(s) 728, 980, 999
BsmAI GTCTC 2 cut(s) 903, 1066
BsmFI GGGAC 2 cut(s) 270, 1047
BsmI GAATGC 1 cut(s) 1003
BsnI GGCC 3 cut(s) 378, 498, 540
Bsp1286I GDGCHC 1 cut(s) 69
Bsp1407I TGTACA 2 cut(s) 85, 165
Bsp143I GATC 6 cut(s) 247, 328, 559, 670, 812, 854
BspACI CCGC 3 cut(s) 619, 862, 1031
BspANI GGCC 3 cut(s) 378, 498, 540
BspCNI CTCAG 2 cut(s) 817, 1076
BspLI GGNNCC 3 cut(s) 120, 258, 1035
BspMI ACCTGC 1 cut(s) 1010
BspPI GGATC 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 857
BsrGI TGTACA 2 cut(s) 85, 165
BsrI ACTGG 3 cut(s) 120, 959, 1008
BssECI CCNNGG 2 cut(s) 499, 722
BssMI GATC 6 cut(s) 247, 328, 559, 670, 812, 854
BssT1I CCWWGG 1 cut(s) 499
Bst2UI CCWGG 1 cut(s) 724
Bst4CI ACNGT 3 cut(s) 313, 961, 1072
Bst6I CTCTTC 1 cut(s) 890
BstAUI TGTACA 2 cut(s) 85, 165
BstC8I GCNNGC 3 cut(s) 324, 619, 742
BstDEI CTNAG 3 cut(s) 707, 825, 1063
BstF5I GGATG 4 cut(s) 136, 673, 817, 1004
BstKTI GATC 6 cut(s) 250, 331, 562, 673, 815, 857
BstMAI GTCTC 2 cut(s) 903, 1066
BstMBI GATC 6 cut(s) 247, 328, 559, 670, 812, 854
BstMWI GCNNNNNNNGC 3 cut(s) 142, 618, 623
BstNI CCWGG 1 cut(s) 724
BstNSI RCATGY 3 cut(s) 11, 172, 445
BstSCI CCNGG 2 cut(s) 378, 722
BstSFI CTRYAG 1 cut(s) 795
BstV2I GAAGAC 2 cut(s) 134, 876
BstX2I RGATCY 1 cut(s) 559
BstXI CCANNNNNNTGG 1 cut(s) 983
BstYI RGATCY 1 cut(s) 559
BsuI GTATCC 1 cut(s) 844
BsuRI GGCC 3 cut(s) 378, 498, 540
BtsCI GGATG 4 cut(s) 136, 673, 817, 1004
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 3 cut(s) 612, 778, 1015
BveI ACCTGC 1 cut(s) 1010
Cac8I GCNNGC 3 cut(s) 324, 619, 742
CaiI CAGNNNCTG 2 cut(s) 614, 1070
Cfr13I GGNCC 5 cut(s) 257, 377, 496, 957, 1034
Csp6I GTAC 7 cut(s) 86, 166, 342, 439, 962, 970, 1068
CviAII CATG 4 cut(s) 8, 169, 238, 442
CviQI GTAC 7 cut(s) 86, 166, 342, 439, 962, 970, 1068
DdeI CTNAG 3 cut(s) 707, 825, 1063
DpnI GATC 6 cut(s) 249, 330, 561, 672, 814, 856
DpnII GATC 6 cut(s) 247, 328, 559, 670, 812, 854
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 890
EarI CTCTTC 1 cut(s) 890
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 499
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 3 cut(s) 257, 957, 1034
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 4 cut(s) 161, 224, 914, 986
EcoICRI GAGCTC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 722
EcoT14I CCWWGG 1 cut(s) 499
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 499
FaeI CATG 4 cut(s) 11, 172, 241, 445
FaqI GGGAC 2 cut(s) 270, 1047
FatI CATG 4 cut(s) 7, 168, 237, 441
FauI CCCGC 2 cut(s) 626, 1024
FauNDI CATATG 1 cut(s) 364
FokI GGATG 4 cut(s) 123, 680, 804, 1011
FriOI GRGCYC 1 cut(s) 69
FspBI CTAG 2 cut(s) 74, 500
GsaI CCCAGC 2 cut(s) 35, 145
GsuI CTGGAG 2 cut(s) 548, 976
HaeIII GGCC 3 cut(s) 378, 498, 540
HapII CCGG 3 cut(s) 93, 380, 878
Hin1II CATG 4 cut(s) 11, 172, 241, 445
HincII GTYRAC 2 cut(s) 634, 789
HindII GTYRAC 2 cut(s) 634, 789
HinfI GANTC 6 cut(s) 155, 192, 432, 568, 677, 1059
HpaI GTTAAC 1 cut(s) 634
HpaII CCGG 3 cut(s) 93, 380, 878
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 3 cut(s) 300, 634, 789
Hpy188I TCNGA 3 cut(s) 62, 423, 826
Hpy188III TCNNGA 8 cut(s) 450, 467, 565, 674, 908, 923, 993, 1080
Hpy8I GTNNAC 3 cut(s) 300, 634, 789
HpyAV CCTTC 6 cut(s) 409, 470, 657, 728, 730, 920
HpyCH4III ACNGT 3 cut(s) 313, 961, 1072
HpyCH4V TGCA 6 cut(s) 326, 445, 545, 626, 810, 1025
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 618, 623
HpyF3I CTNAG 3 cut(s) 707, 825, 1063
Hsp92II CATG 4 cut(s) 11, 172, 241, 445
KspAI GTTAAC 1 cut(s) 634
Kzo9I GATC 6 cut(s) 247, 328, 559, 670, 812, 854
LmnI GCTCC 2 cut(s) 4, 995
LweI GCATC 2 cut(s) 145, 309
MaeI CTAG 2 cut(s) 74, 500
MaeIII GTNAC 1 cut(s) 224
MalI GATC 6 cut(s) 249, 330, 561, 672, 814, 856
MboI GATC 6 cut(s) 247, 328, 559, 670, 812, 854
MboII GAAGA 8 cut(s) 52, 139, 167, 242, 281, 394, 881, 907
MflI RGATCY 1 cut(s) 559
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 5 cut(s) 161, 332, 388, 648, 935
MlyI GAGTC 4 cut(s) 164, 441, 562, 1068
MseI TTAA 4 cut(s) 27, 426, 491, 633
MslI CAYNNNNRTG 1 cut(s) 1008
MspI CCGG 3 cut(s) 93, 380, 878
MspR9I CCNGG 2 cut(s) 380, 724
Mva1269I GAATGC 1 cut(s) 1003
MvaI CCWGG 1 cut(s) 724
MwoI GCNNNNNNNGC 3 cut(s) 142, 618, 623
NciI CCSGG 1 cut(s) 380
NdeI CATATG 1 cut(s) 364
NdeII GATC 6 cut(s) 247, 328, 559, 670, 812, 854
NlaIII CATG 4 cut(s) 11, 172, 241, 445
NlaIV GGNNCC 3 cut(s) 120, 258, 1035
NmuCI GTSAC 1 cut(s) 224
NspI RCATGY 3 cut(s) 11, 172, 445
PaqCI CACCTGC 1 cut(s) 1010
PctI GAATGC 1 cut(s) 1003
PfeI GAWTC 2 cut(s) 192, 677
PflMI CCANNNNNTGG 1 cut(s) 999
PleI GAGTC 4 cut(s) 163, 440, 562, 1067
PpsI GAGTC 4 cut(s) 163, 440, 562, 1067
PsiI TTATAA 1 cut(s) 387
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 722
PspFI CCCAGC 2 cut(s) 31, 141
PspGI CCWGG 1 cut(s) 722
PspN4I GGNNCC 3 cut(s) 120, 258, 1035
PspPI GGNCC 5 cut(s) 257, 377, 496, 957, 1034
PstNI CAGNNNCTG 2 cut(s) 614, 1070
PsuI RGATCY 1 cut(s) 559
RsaI GTAC 7 cut(s) 87, 167, 343, 440, 963, 971, 1069
RsaNI GTAC 7 cut(s) 86, 166, 342, 439, 962, 970, 1068
RseI CAYNNNNRTG 1 cut(s) 1008
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 4 cut(s) 27, 426, 491, 633
Sau3AI GATC 6 cut(s) 247, 328, 559, 670, 812, 854
Sau96I GGNCC 5 cut(s) 257, 377, 496, 957, 1034
ScaI AGTACT 1 cut(s) 343
SchI GAGTC 4 cut(s) 164, 441, 562, 1068
ScrFI CCNGG 2 cut(s) 380, 724
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 2 cut(s) 145, 309
SfcI CTRYAG 1 cut(s) 795
SinI GGWCC 3 cut(s) 257, 957, 1034
SmiMI CAYNNNNRTG 1 cut(s) 1008
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
Sse9I AATT 5 cut(s) 161, 332, 388, 648, 935
SsiI CCGC 3 cut(s) 619, 862, 1031
SspMI CTAG 2 cut(s) 74, 500
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 2 cut(s) 378, 722
StyI CCWWGG 1 cut(s) 499
TaaI ACNGT 3 cut(s) 313, 961, 1072
TaqI TCGA 3 cut(s) 435, 907, 922
TasI AATT 5 cut(s) 161, 332, 388, 648, 935
TatI WGTACW 4 cut(s) 85, 165, 341, 438
TfiI GAWTC 2 cut(s) 192, 677
Tru1I TTAA 4 cut(s) 27, 426, 491, 633
Tru9I TTAA 4 cut(s) 27, 426, 491, 633
TscAI CASTG 3 cut(s) 619, 778, 1015
TseFI GTSAC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 3 cut(s) 402, 452, 876
TspRI CASTG 3 cut(s) 619, 778, 1015
Van91I CCANNNNNTGG 1 cut(s) 999
VpaK11BI GGWCC 3 cut(s) 257, 957, 1034
XceI RCATGY 3 cut(s) 11, 172, 445
XmaJI CCTAGG 1 cut(s) 499
XspI CTAG 2 cut(s) 74, 500
ZrmI AGTACT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.