Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

54091222 .. 54091856

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG351600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGTGTTATCGGAATTCATTCACAGCTACCTTGCTCCTGAGTTCCTATTGCATGGTATAGTAGATGAAAAAACTGATGTTTTTGCCTTTGGTGTGCTGCTGTTGGAACTAGTCACCGGGCGCCGAGCTCTAGATTACTCCCAACAAAGCCTTGTTTTGTGGGCAAAGCCCTTGCTGAAGAAGAATGAAATCAAAGGCTTGGTTGATCCTTCCCTAGCCAATGACTACAACCCTCTACAGATGAATCTCGTTTTGTTGGCTGCTTCGTTGTGCATACAACGATCCTCAATACGACGGCCTAGTATGAATCAGGTGTTACTACTTCTGAATGGCGATCTTTGCTGCTTGAAGTACATGAAGAAAAGCCGAATGCCATTTTTCCGAAAGGCATTTCGAGAAGACATCGTCAACAACATCGAAGACCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

142

Amino Acids

16.24

Weight (kDa)

8.46

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	9 - 56	3e-06	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	9 - 105	7.7e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	120
AclWI	GGATC	2 cut(s)	200, 276
AcsI	RAATTY	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	121
AfaI	GTAC	1 cut(s)	353
AgsI	TTSAA	1 cut(s)	349
AhlI	ACTAGT	1 cut(s)	109
AluBI	AGCT	2 cut(s)	27, 128
AluI	AGCT	2 cut(s)	27, 128
Alw21I	GWGCWC	1 cut(s)	130
AlwI	GGATC	2 cut(s)	200, 276
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	3 cut(s)	97, 260, 342
ApoI	RAATTY	1 cut(s)	14
Asp700I	GAANNNNTTC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	123
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	3 cut(s)	84, 247, 329
BceAI	ACGGC	1 cut(s)	311
BcnI	CCSGG	1 cut(s)	118
BcuI	ACTAGT	1 cut(s)	109
BfaI	CTAG	4 cut(s)	110, 131, 215, 300
BfmI	CTRYAG	1 cut(s)	236
BfoI	RGCGCY	1 cut(s)	124
BisI	GCNGC	3 cut(s)	98, 261, 343
BlsI	GCNGC	3 cut(s)	99, 262, 344
Bme1390I	CCNGG	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	118
BpiI	GAAGAC	1 cut(s)	405
BpuMI	CCSGG	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	30
BseXI	GCAGC	3 cut(s)	84, 247, 329
BshFI	GGCC	1 cut(s)	298
BshNI	GGYRCC	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	375
BsnI	GGCC	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	3 cut(s)	205, 281, 334
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	122
BspPI	GGATC	2 cut(s)	200, 276
BspT107I	GGYRCC	1 cut(s)	120
BssMI	GATC	3 cut(s)	205, 281, 334
BssNI	GRCGYC	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	39
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	3 cut(s)	208, 284, 337
BstMBI	GATC	3 cut(s)	205, 281, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	236
BstV1I	GCAGC	3 cut(s)	84, 247, 329
BstV2I	GAAGAC	1 cut(s)	405
BsuRI	GGCC	1 cut(s)	298
CfoI	GCGC	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	2 cut(s)	53, 355
CviJI	RGCY	9 cut(s)	27, 128, 150, 169, 198, 218, 260, 298, 366
CviKI_1	RGCY	9 cut(s)	27, 128, 150, 169, 198, 218, 260, 298, 366
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	39
DinI	GGCGCC	1 cut(s)	122
DpnI	GATC	3 cut(s)	207, 283, 336
DpnII	GATC	3 cut(s)	205, 281, 334
Ecl136II	GAGCTC	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	14
EcoT38I	GRGCYC	1 cut(s)	130
EgeI	GGCGCC	1 cut(s)	122
EheI	GGCGCC	1 cut(s)	122
FaeI	CATG	2 cut(s)	56, 358
FaiI	YATR	5 cut(s)	54, 59, 275, 305, 356
FatI	CATG	2 cut(s)	52, 354
Fnu4HI	GCNGC	3 cut(s)	98, 261, 343
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	3 cut(s)	98, 261, 343
FspBI	CTAG	4 cut(s)	110, 131, 215, 300
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	3 cut(s)	98, 261, 343
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	298
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	121
Hin1II	CATG	2 cut(s)	56, 358
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	2 cut(s)	244, 307
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	3 cut(s)	13, 327, 383
Hpy188III	TCNNGA	3 cut(s)	38, 131, 395
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	1 cut(s)	297
HpyAV	CCTTC	1 cut(s)	219
HpyCH4V	TGCA	2 cut(s)	52, 273
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpyF3I	CTNAG	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	121
Hsp92II	CATG	2 cut(s)	56, 358
HspAI	GCGC	1 cut(s)	121
KasI	GGCGCC	1 cut(s)	120
Kzo9I	GATC	3 cut(s)	205, 281, 334
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	3 cut(s)	51, 130, 296
Lsp1109I	GCAGC	3 cut(s)	84, 247, 329
MaeI	CTAG	4 cut(s)	110, 131, 215, 300
MaeIII	GTNAC	2 cut(s)	112, 315
MalI	GATC	3 cut(s)	207, 283, 336
MboI	GATC	3 cut(s)	205, 281, 334
MboII	GAAGA	4 cut(s)	190, 193, 370, 410
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	1 cut(s)	14
Mly113I	GGCGCC	1 cut(s)	121
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	2 cut(s)	243, 295
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	1 cut(s)	427
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	118
Mva1269I	GAATGC	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	339
NarI	GGCGCC	1 cut(s)	121
NciI	CCSGG	1 cut(s)	118
NdeII	GATC	3 cut(s)	205, 281, 334
NlaIII	CATG	2 cut(s)	56, 358
NlaIV	GGNNCC	1 cut(s)	122
NmeAIII	GCCGAG	1 cut(s)	149
NmuCI	GTSAC	1 cut(s)	112
PctI	GAATGC	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	244, 307
PflFI	GACNNNGTC	1 cut(s)	404
PkrI	GCNGC	3 cut(s)	99, 262, 344
PluTI	GGCGCC	1 cut(s)	124
Psp124BI	GAGCTC	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	122
PsyI	GACNNNGTC	1 cut(s)	404
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SacI	GAGCTC	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	427
SatI	GCNGC	3 cut(s)	98, 261, 343
Sau3AI	GATC	3 cut(s)	205, 281, 334
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	4 cut(s)	29, 33, 130, 315
SfcI	CTRYAG	1 cut(s)	236
SfoI	GGCGCC	1 cut(s)	122
SpeI	ACTAGT	1 cut(s)	109
Sse9I	AATT	1 cut(s)	14
SspDI	GGCGCC	1 cut(s)	120
SspMI	CTAG	4 cut(s)	110, 131, 215, 300
SstI	GAGCTC	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	116
TaqI	TCGA	2 cut(s)	394, 417
TasI	AATT	1 cut(s)	14
TatI	WGTACW	1 cut(s)	351
TfiI	GAWTC	2 cut(s)	244, 307
Tru1I	TTAA	1 cut(s)	427
Tru9I	TTAA	1 cut(s)	427
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	3 cut(s)	97, 260, 342
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	6 cut(s)	7, 81, 201, 257, 320, 371
Tth111I	GACNNNGTC	1 cut(s)	404
XapI	RAATTY	1 cut(s)	14
XbaI	TCTAGA	1 cut(s)	130
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	4 cut(s)	110, 131, 215, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.