Rh6CG445800

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
N/A
Physical Location & Seq
Reverse (-)
62380904 .. 62384721
3818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG445800.1

Sequence Viewer

Length: 519 bp
ATGGGTGGAGCGATTTCGTTCCGAGGTGGAAGTGCTCAGCGATTCCATTCTTGTTTCTCGGTGGATTGGATTGGCGTAGATGTTTTTCCAGGTCTGGATCCGGCCGGCGACAGGCAGATAATCTATCAAACGGAACCCAATTCCTCTGATACCTCCATAGCTGCACAAAAAGGAGTAAGGAGAATTCTTGTACATCTCAACATTGGACAATTCGATCCTCATCGAACTTCTCCTCCTTCTCTCTCTGCTGTCACTAAAAGAGATCCAGAATTCTATTCAGAGCTGGTCATTGGAGTTAGAGGATCGACGCTTTACATACTCAGAGCTTTCGCTGTGAAGTTACTGACTTCTTCTTCCAGGCAAGGCTCAAAAGAATTCCAAAATGAGGTTAAACTATTGATGACAGCTCATCATCGAAACTTGGTTTCTCTCATTGGTTACTGCGATGAAAGTATACTATGGCACTTGTTTTTGAGTATGCAGCCAATGGAAATTTGCAGCAACACTTATCAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

172

Amino Acids

19.18

Weight (kDa)

7.79

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 454
AclWI GGATC 5 cut(s) 92, 105, 209, 257, 310
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 4 cut(s) 183, 269, 374, 492
AfaI GTAC 1 cut(s) 192
AfiI CCNNNNNNNGG 2 cut(s) 111, 385
AjnI CCWGG 2 cut(s) 88, 356
AloI GAACNNNNNNTCC 2 cut(s) 217, 249
AluBI AGCT 4 cut(s) 161, 283, 326, 407
AluI AGCT 4 cut(s) 161, 283, 326, 407
Alw21I GWGCWC 1 cut(s) 37
AlwI GGATC 5 cut(s) 92, 105, 209, 257, 310
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 3 cut(s) 161, 481, 498
ApoI RAATTY 4 cut(s) 183, 269, 374, 492
BamHI GGATCC 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 3 cut(s) 148, 493, 510
BciT130I CCWGG 2 cut(s) 90, 358
BglII AGATCT 1 cut(s) 513
BisI GCNGC 3 cut(s) 162, 482, 499
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 3 cut(s) 163, 483, 500
Bme1390I CCNGG 2 cut(s) 90, 358
BmiI GGNNCC 2 cut(s) 99, 135
BmrFI CCNGG 2 cut(s) 90, 358
Bpu1102I GCTNAGC 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 22
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 385
Bse118I RCCGGY 1 cut(s) 104
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 2 cut(s) 90, 358
BseDI CCNNGG 1 cut(s) 22
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 2 cut(s) 111, 385
BseMII CTCAG 2 cut(s) 50, 334
BseRI GAGGAG 1 cut(s) 222
BseX3I CGGCCG 1 cut(s) 102
BseXI GCAGC 3 cut(s) 148, 493, 510
BsgI GTGCAG 1 cut(s) 147
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 1 cut(s) 104
BsiEI CGRYCG 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 37
BsiSI CCGG 2 cut(s) 101, 105
BslI CCNNNNNNNGG 2 cut(s) 111, 385
BsnI GGCC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 37
Bsp1407I TGTACA 1 cut(s) 190
Bsp143I GATC 5 cut(s) 97, 214, 262, 302, 513
Bsp1720I GCTNAGC 1 cut(s) 36
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 2 cut(s) 49, 333
BspLI GGNNCC 2 cut(s) 99, 135
BspPI GGATC 5 cut(s) 92, 105, 209, 257, 310
BsrFI RCCGGY 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 5 cut(s) 97, 214, 262, 302, 513
BssNAI GTATAC 1 cut(s) 455
Bst1107I GTATAC 1 cut(s) 455
Bst2UI CCWGG 2 cut(s) 90, 358
BstAUI TGTACA 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 36, 320
BstKTI GATC 5 cut(s) 100, 217, 265, 305, 516
BstMBI GATC 5 cut(s) 97, 214, 262, 302, 513
BstMCI CGRYCG 1 cut(s) 105
BstNI CCWGG 2 cut(s) 90, 358
BstSCI CCNGG 2 cut(s) 88, 356
BstV1I GCAGC 3 cut(s) 148, 493, 510
BstX2I RGATCY 3 cut(s) 97, 262, 513
BstYI RGATCY 3 cut(s) 97, 262, 513
BstZ17I GTATAC 1 cut(s) 455
BstZI CGGCCG 1 cut(s) 102
BsuRI GGCC 1 cut(s) 104
BtgZI GCGATG 1 cut(s) 459
Cac8I GCNNGC 1 cut(s) 106
Cfr10I RCCGGY 1 cut(s) 104
CseI GACGC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 191
CviJI RGCY 7 cut(s) 104, 161, 283, 326, 366, 407, 484
CviKI_1 RGCY 7 cut(s) 104, 161, 283, 326, 366, 407, 484
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 2 cut(s) 36, 320
DpnI GATC 5 cut(s) 99, 216, 264, 304, 515
DpnII GATC 5 cut(s) 97, 214, 262, 302, 513
EaeI YGGCCR 1 cut(s) 102
EagI CGGCCG 1 cut(s) 102
EclXI CGGCCG 1 cut(s) 102
Eco52I CGGCCG 1 cut(s) 102
EcoRI GAATTC 3 cut(s) 183, 269, 374
EcoRII CCWGG 2 cut(s) 88, 356
FaiI YATR 5 cut(s) 158, 317, 455, 460, 479
FblI GTMKAC 1 cut(s) 454
Fnu4HI GCNGC 3 cut(s) 162, 482, 499
Fsp4HI GCNGC 3 cut(s) 162, 482, 499
GluI GCNGC 3 cut(s) 162, 482, 499
HaeIII GGCC 1 cut(s) 104
HapII CCGG 2 cut(s) 101, 105
HgaI GACGC 1 cut(s) 316
HinfI GANTC 1 cut(s) 42
HpaII CCGG 2 cut(s) 101, 105
Hpy166II GTNNAC 1 cut(s) 455
Hpy188I TCNGA 5 cut(s) 23, 148, 280, 323, 513
Hpy188III TCNNGA 2 cut(s) 95, 266
Hpy8I GTNNAC 1 cut(s) 455
Hpy99I CGWCG 1 cut(s) 310
HpyAV CCTTC 1 cut(s) 246
HpyCH4V TGCA 3 cut(s) 164, 481, 498
HpyF3I CTNAG 2 cut(s) 36, 320
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 5 cut(s) 97, 214, 262, 302, 513
LmnI GCTCC 1 cut(s) 8
Lsp1109I GCAGC 3 cut(s) 148, 493, 510
MaeIII GTNAC 3 cut(s) 250, 339, 437
MalI GATC 5 cut(s) 99, 216, 264, 304, 515
MboI GATC 5 cut(s) 97, 214, 262, 302, 513
MboII GAAGA 2 cut(s) 342, 345
MflI RGATCY 3 cut(s) 97, 262, 513
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 6 cut(s) 139, 183, 209, 269, 374, 492
MnlI CCTC 7 cut(s) 17, 154, 163, 228, 243, 293, 379
MroNI GCCGGC 1 cut(s) 104
MseI TTAA 1 cut(s) 390
MspI CCGG 2 cut(s) 101, 105
MspR9I CCNGG 2 cut(s) 90, 358
MvaI CCWGG 2 cut(s) 90, 358
NaeI GCCGGC 1 cut(s) 106
NdeII GATC 5 cut(s) 97, 214, 262, 302, 513
NgoMIV GCCGGC 1 cut(s) 104
NlaIV GGNNCC 2 cut(s) 99, 135
NmuCI GTSAC 1 cut(s) 250
PdiI GCCGGC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 42
PkrI GCNGC 3 cut(s) 163, 483, 500
Psp6I CCWGG 2 cut(s) 88, 356
PspGI CCWGG 2 cut(s) 88, 356
PspN4I GGNNCC 2 cut(s) 99, 135
PsuI RGATCY 3 cut(s) 97, 262, 513
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 3 cut(s) 162, 482, 499
Sau3AI GATC 5 cut(s) 97, 214, 262, 302, 513
ScrFI CCNGG 2 cut(s) 90, 358
SduI GDGCHC 1 cut(s) 37
SetI ASST 8 cut(s) 28, 94, 155, 163, 285, 328, 390, 409
Sse9I AATT 6 cut(s) 139, 183, 209, 269, 374, 492
StyD4I CCNGG 2 cut(s) 88, 356
TaqI TCGA 4 cut(s) 213, 223, 305, 415
TasI AATT 6 cut(s) 139, 183, 209, 269, 374, 492
TatI WGTACW 1 cut(s) 190
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 3 cut(s) 161, 481, 498
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 462
TspGWI ACGGA 1 cut(s) 146
XapI RAATTY 4 cut(s) 183, 269, 374, 492
XmiI GTMKAC 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.