Rh6CG493500

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
N/A
Physical Location & Seq
Forward (+)
65942160 .. 65943575
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG493500.1

Sequence Viewer

Length: 963 bp
ATGATCAGTAAAACCGACTGGTCTTATGGGTGTAAACCGGCTGGTTTCAATCTGTCCTGCAAGAGTAGTGCACGGGAGGAGTTTGGTTTTGTGCATCTTCCACGTATTGAGATGTATGGGTATGATTATGCCGTCTATGGCAATTACACATTAGATGAGTGCAAAAGTTTGTGCCTGGACTTGTGCAACTGTACTGCATTCCACCACAAATTTGGTGGTGGTCAGTATCAGTGTTATCCGAAGGCGCAATTACGAAATGGGTACCGGTCACCTGCTTTTGATGGGGAGTTGTATGTCAAGCTACCAATAGGCCTCCTCAATGCTACCTATAGTGATACCAACATGTGCTCGGCTAAACTTACAGCACAGCTTGACAGAACATATGAAAGAAGCAAGCCCAATGGATCGATTGAGTTTATGCTAAAATTTGCATCTGCCTTGGGAGGAATAGAGGTTATTTGCATCTTTGTTGTGTGGTTTTTTGTGACAAGAAGAAGCGGTGGAGATAAAAAAGATTCAGAATTAGAACTACTTGCTCAAGGCTACCTTCAAGCCGCCAGCGGATTCAGAAGGTTTACTTACTCAGAGTTGAAGAAGGCCACAAAAGGTTTCAAAGAAGAGATTGGCAGAGGAGGAGGAGGAGTTGTGTACAAAGGCATATTGTCTGATCAACGAGTTGCAGCAATCAAGCAACTGAATGACTGTAATCAGGGGGAAGCAGAGTTCCTTGCAAAAGTGAGCCTTATTGGTGGAGGGGACACACAGAAGAAAATGATGGTCAAGTGGGTCATGGAGAAAATGGATGGAGCGTTTCCAAATGCAGGGACCGAGATTGGAGGTGAAAATGAAGATGGCAAGCTGGGAATTCTTGTTAAAGTGGCTCTTCAGTGTATAGAGGAAGACAGAAATGCTAGACCCTCTATGAGTCGAGTAGTTGAGATGCTTCTGCATCATGAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

320

Amino Acids

35.56

Weight (kDa)

7.92

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 280
Acc36I ACCTGC 1 cut(s) 280
Acc65I GGTACC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 261
AciI CCGC 3 cut(s) 498, 555, 561
AclWI GGATC 1 cut(s) 412
AcsI RAATTY 3 cut(s) 209, 425, 864
AcuI CTGAAG 1 cut(s) 869
AfaI GTAC 3 cut(s) 193, 263, 650
AfiI CCNNNNNNNGG 1 cut(s) 821
AflIII ACRYGT 1 cut(s) 342
AgeI ACCGGT 1 cut(s) 264
AgsI TTSAA 4 cut(s) 49, 551, 592, 613
AjnI CCWGG 1 cut(s) 174
AloI GAACNNNNNNTCC 2 cut(s) 707, 739
AluBI AGCT 3 cut(s) 301, 370, 859
AluI AGCT 3 cut(s) 301, 370, 859
Alw21I GWGCWC 2 cut(s) 73, 350
Alw44I GTGCAC 1 cut(s) 69
AlwI GGATC 1 cut(s) 412
AoxI GGCC 2 cut(s) 310, 597
ApaLI GTGCAC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 680
ApoI RAATTY 3 cut(s) 209, 425, 864
AsiGI ACCGGT 1 cut(s) 264
Asp718I GGTACC 1 cut(s) 261
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 825
AsuHPI GGTGA 2 cut(s) 261, 851
AvaII GGWCC 1 cut(s) 825
BaeGI GKGCMC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 906
Bbv12I GWGCWC 2 cut(s) 73, 350
BbvI GCAGC 1 cut(s) 692
BccI CCATC 4 cut(s) 275, 769, 797, 845
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 176
BclI TGATCA 2 cut(s) 3, 667
BfaI CTAG 1 cut(s) 912
BfmI CTRYAG 1 cut(s) 328
BfuAI ACCTGC 1 cut(s) 280
BisI GCNGC 2 cut(s) 555, 681
BlsI GCNGC 2 cut(s) 556, 682
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 1 cut(s) 825
BmgT120I GGNCC 1 cut(s) 825
BmiI GGNNCC 2 cut(s) 263, 826
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 5 cut(s) 103, 440, 471, 930, 958
BpiI GAAGAC 1 cut(s) 906
BpuEI CTTGAG 1 cut(s) 522
Bsa29I ATCGAT 1 cut(s) 407
BsaAI YACGTR 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 438
BsaWI WCCGGW 1 cut(s) 264
BsaXI ACNNNNNCTCC 4 cut(s) 627, 630, 657, 660
Bsc4I CCNNNNNNNGG 1 cut(s) 821
Bse118I RCCGGY 2 cut(s) 37, 264
Bse1I ACTGG 1 cut(s) 23
BseBI CCWGG 1 cut(s) 176
BseCI ATCGAT 1 cut(s) 407
BseDI CCNNGG 1 cut(s) 438
BseGI GGATG 1 cut(s) 808
BseLI CCNNNNNNNGG 1 cut(s) 821
BseMII CTCAG 1 cut(s) 597
BseNI ACTGG 1 cut(s) 23
BseRI GAGGAG 6 cut(s) 92, 305, 645, 648, 651, 654
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 1 cut(s) 692
BseYI CCCAGC 1 cut(s) 859
BshFI GGCC 2 cut(s) 312, 599
BshNI GGYRCC 1 cut(s) 261
BshTI ACCGGT 1 cut(s) 264
BshVI ATCGAT 1 cut(s) 407
BsiHKAI GWGCWC 2 cut(s) 73, 350
BsiSI CCGG 2 cut(s) 38, 265
BslFI GGGAC 2 cut(s) 770, 838
BslI CCNNNNNNNGG 1 cut(s) 821
BsmFI GGGAC 2 cut(s) 770, 838
BsmI GAATGC 1 cut(s) 197
BsnI GGCC 2 cut(s) 312, 599
Bsp1286I GDGCHC 2 cut(s) 73, 350
Bsp1407I TGTACA 1 cut(s) 648
Bsp143I GATC 3 cut(s) 3, 404, 667
BspACI CCGC 3 cut(s) 498, 555, 561
BspANI GGCC 2 cut(s) 312, 599
BspCNI CTCAG 1 cut(s) 596
BspDI ATCGAT 1 cut(s) 407
BspHI TCATGA 1 cut(s) 952
BspLI GGNNCC 2 cut(s) 263, 826
BspMI ACCTGC 1 cut(s) 280
BspPI GGATC 1 cut(s) 412
BspQI GCTCTTC 1 cut(s) 888
BspT107I GGYRCC 1 cut(s) 261
BsrFI RCCGGY 2 cut(s) 37, 264
BsrGI TGTACA 1 cut(s) 648
BsrI ACTGG 1 cut(s) 23
BssAI RCCGGY 2 cut(s) 37, 264
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 3 cut(s) 3, 404, 667
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 2 cut(s) 191, 704
Bst6I CTCTTC 2 cut(s) 612, 888
BstAUI TGTACA 1 cut(s) 648
BstBAI YACGTR 1 cut(s) 104
BstC8I GCNNGC 3 cut(s) 395, 559, 857
BstDEI CTNAG 1 cut(s) 583
BstEII GGTNACC 1 cut(s) 267
BstF5I GGATG 1 cut(s) 808
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 3 cut(s) 6, 407, 670
BstMBI GATC 3 cut(s) 3, 404, 667
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 346
BstPI GGTNACC 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 328
BstSLI GKGCMC 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 692
BstV2I GAAGAC 1 cut(s) 906
BstXI CCANNNNNNTGG 1 cut(s) 212
Bsu15I ATCGAT 1 cut(s) 407
BsuRI GGCC 2 cut(s) 312, 599
BsuTUI ATCGAT 1 cut(s) 407
BtsCI GGATG 1 cut(s) 808
BtsIMutI CAGTG 2 cut(s) 236, 893
BveI ACCTGC 1 cut(s) 280
Cac8I GCNNGC 3 cut(s) 395, 559, 857
CciI TCATGA 1 cut(s) 952
CfoI GCGC 1 cut(s) 247
Cfr10I RCCGGY 2 cut(s) 37, 264
Cfr13I GGNCC 1 cut(s) 825
ClaI ATCGAT 1 cut(s) 407
Csp6I GTAC 3 cut(s) 192, 262, 649
CspAI ACCGGT 1 cut(s) 264
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 3 cut(s) 343, 790, 953
CviQI GTAC 3 cut(s) 192, 262, 649
DdeI CTNAG 1 cut(s) 583
DpnI GATC 3 cut(s) 5, 406, 669
DpnII GATC 3 cut(s) 3, 404, 667
Eam1104I CTCTTC 2 cut(s) 612, 888
EarI CTCTTC 2 cut(s) 612, 888
Eco130I CCWWGG 1 cut(s) 438
Eco147I AGGCCT 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 825
Eco57I CTGAAG 1 cut(s) 869
Eco91I GGTNACC 1 cut(s) 267
EcoO65I GGTNACC 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 864
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 3 cut(s) 346, 793, 956
FalI AAGNNNNNCTT 8 cut(s) 531, 563, 562, 594, 726, 758, 867, 899
FaqI GGGAC 2 cut(s) 770, 838
FatI CATG 3 cut(s) 342, 789, 952
FauNDI CATATG 1 cut(s) 382
FbaI TGATCA 2 cut(s) 3, 667
Fnu4HI GCNGC 2 cut(s) 555, 681
FokI GGATG 1 cut(s) 815
Fsp4HI GCNGC 2 cut(s) 555, 681
FspBI CTAG 1 cut(s) 912
GlaI GCGC 1 cut(s) 246
GluI GCNGC 2 cut(s) 555, 681
GsaI CCCAGC 1 cut(s) 863
HaeIII GGCC 2 cut(s) 312, 599
HapII CCGG 2 cut(s) 38, 265
HhaI GCGC 1 cut(s) 247
Hin1II CATG 3 cut(s) 346, 793, 956
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HinfI GANTC 3 cut(s) 515, 564, 925
HpaII CCGG 2 cut(s) 38, 265
HphI GGTGA 2 cut(s) 261, 851
Hpy166II GTNNAC 4 cut(s) 35, 71, 576, 649
Hpy188I TCNGA 5 cut(s) 240, 520, 569, 586, 667
Hpy188III TCNNGA 1 cut(s) 953
Hpy8I GTNNAC 4 cut(s) 35, 71, 576, 649
HpyAV CCTTC 4 cut(s) 235, 557, 564, 589
HpyCH4III ACNGT 2 cut(s) 191, 704
HpyCH4IV ACGT 1 cut(s) 103
HpyF3I CTNAG 1 cut(s) 583
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 3 cut(s) 346, 793, 956
HspAI GCGC 1 cut(s) 245
KpnI GGTACC 1 cut(s) 265
Ksp22I TGATCA 2 cut(s) 3, 667
Kzo9I GATC 3 cut(s) 3, 404, 667
LguI GCTCTTC 1 cut(s) 888
LmnI GCTCC 1 cut(s) 806
Lsp1109I GCAGC 1 cut(s) 692
LweI GCATC 5 cut(s) 103, 440, 471, 930, 958
MaeI CTAG 1 cut(s) 912
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 2 cut(s) 267, 484
MalI GATC 3 cut(s) 5, 406, 669
MboI GATC 3 cut(s) 3, 404, 667
MboII GAAGA 8 cut(s) 89, 504, 604, 629, 778, 860, 875, 911
MhlI GDGCHC 2 cut(s) 73, 350
MluCI AATT 7 cut(s) 142, 209, 248, 425, 521, 864, 956
MlyI GAGTC 1 cut(s) 934
MseI TTAA 1 cut(s) 873
MspA1I CMGCKG 1 cut(s) 561
MspI CCGG 2 cut(s) 38, 265
MspR9I CCNGG 1 cut(s) 176
Mva1269I GAATGC 1 cut(s) 197
MvaI CCWGG 1 cut(s) 176
NdeI CATATG 1 cut(s) 382
NdeII GATC 3 cut(s) 3, 404, 667
NlaIII CATG 3 cut(s) 346, 793, 956
NlaIV GGNNCC 2 cut(s) 263, 826
NmeAIII GCCGAG 1 cut(s) 329
NmuCI GTSAC 2 cut(s) 267, 484
NspI RCATGY 1 cut(s) 346
PagI TCATGA 1 cut(s) 952
PaqCI CACCTGC 1 cut(s) 280
PceI AGGCCT 1 cut(s) 312
PciI ACATGT 1 cut(s) 342
PciSI GCTCTTC 1 cut(s) 888
PctI GAATGC 1 cut(s) 197
PfeI GAWTC 2 cut(s) 515, 564
PinAI ACCGGT 1 cut(s) 264
PkrI GCNGC 2 cut(s) 556, 682
PleI GAGTC 1 cut(s) 933
PpsI GAGTC 1 cut(s) 933
Ppu21I YACGTR 1 cut(s) 104
PscI ACATGT 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 174
PspEI GGTNACC 1 cut(s) 267
PspFI CCCAGC 1 cut(s) 859
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 263, 826
PspPI GGNCC 1 cut(s) 825
RsaI GTAC 3 cut(s) 193, 263, 650
RsaNI GTAC 3 cut(s) 192, 262, 649
SapI GCTCTTC 1 cut(s) 888
SaqAI TTAA 1 cut(s) 873
SatI GCNGC 2 cut(s) 555, 681
Sau3AI GATC 3 cut(s) 3, 404, 667
Sau96I GGNCC 1 cut(s) 825
SchI GAGTC 1 cut(s) 934
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 2 cut(s) 73, 350
SfaNI GCATC 5 cut(s) 103, 440, 471, 930, 958
SfcI CTRYAG 1 cut(s) 328
SinI GGWCC 1 cut(s) 825
SmlI CTYRAG 1 cut(s) 537
SmoI CTYRAG 1 cut(s) 537
Sse9I AATT 7 cut(s) 142, 209, 248, 425, 521, 864, 956
SseBI AGGCCT 1 cut(s) 312
SsiI CCGC 3 cut(s) 498, 555, 561
SspMI CTAG 1 cut(s) 912
StuI AGGCCT 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 174
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 2 cut(s) 191, 704
TaiI ACGT 1 cut(s) 106
TaqI TCGA 2 cut(s) 407, 928
TaqII GACCGA 1 cut(s) 842
TasI AATT 7 cut(s) 142, 209, 248, 425, 521, 864, 956
TatI WGTACW 2 cut(s) 191, 648
TauI GCSGC 1 cut(s) 557
TfiI GAWTC 2 cut(s) 515, 564
Tru1I TTAA 1 cut(s) 873
Tru9I TTAA 1 cut(s) 873
TscAI CASTG 2 cut(s) 236, 893
TseFI GTSAC 2 cut(s) 267, 484
TseI GCWGC 1 cut(s) 680
Tsp45I GTSAC 2 cut(s) 267, 484
TspDTI ATGAA 2 cut(s) 399, 861
TspRI CASTG 2 cut(s) 236, 893
VneI GTGCAC 1 cut(s) 69
VpaK11BI GGWCC 1 cut(s) 825
XapI RAATTY 3 cut(s) 209, 425, 864
XceI RCATGY 1 cut(s) 346
XcmI CCANNNNNNNNNTGG 2 cut(s) 209, 212
XspI CTAG 1 cut(s) 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.