Rh6DG068400

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
N/A
Physical Location & Seq
Reverse (-)
6982547 .. 6988014
5468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG068400.1

Sequence Viewer

Length: 444 bp
ATGACTTTGTTCGGTGTTCCCTCGCTTGGTCCAGTGATCATCTTACTCGGATCTGAATGGTTTGAATGGTTCTCCGCAATTGACCTTTGGAGCACCAAAAATAAAAAAATAAAAAAGCTCCAAGAGAAACTAGGATCTGTCAACCAAGCTTTGTCTGCTAAGGAATTCAAGCTTCTCTGCTCTAAGTTGGCTTGTTTTCTTGGCCGTCAATTTAGAAAGCTTGAGGCGAAGTGGAATGATCATAAAGAATCTGTGGATAGTGCTGAAATGAGTGGAGACAAAATCAAGCATGAGGTTCGAGCATGGCTAACAGAAGCTGATAATGCCATGACAAATGAACCGAGTCACAATCCATACATCCCTATGGTAGCAAGTGAACAATCACATTCTCAAATTGCTTCAAGATGTGCAGAAGAAAGGGATGGTGAAATCCAATGGTCCTGA

Protein Analysis

147

Amino Acids

16.71

Weight (kDa)

6.43

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 75
AclWI GGATC 2 cut(s) 58, 142
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 3 cut(s) 65, 169, 402
AluBI AGCT 5 cut(s) 118, 149, 172, 220, 317
AluI AGCT 5 cut(s) 118, 149, 172, 220, 317
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 270
AlwI GGATC 2 cut(s) 58, 142
AlwNI CAGNNNCTG 1 cut(s) 317
AoxI GGCC 1 cut(s) 202
ApoI RAATTY 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 29, 438
AsuHPI GGTGA 1 cut(s) 437
AvaII GGWCC 2 cut(s) 29, 438
Bbv12I GWGCWC 1 cut(s) 95
BccI CCATC 1 cut(s) 416
BceAI ACGGC 1 cut(s) 189
BcgI CGANNNNNNTGC 2 cut(s) 278, 312
BclI TGATCA 2 cut(s) 36, 238
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 1 cut(s) 131
Bme18I GGWCC 2 cut(s) 29, 438
BmgT120I GGNCC 2 cut(s) 29, 438
Bpu10I CCTNAGC 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 242
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 32
BseGI GGATG 2 cut(s) 357, 427
BseLI CCNNNNNNNGG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 32
BsgI GTGCAG 1 cut(s) 429
BshFI GGCC 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 270
BsnI GGCC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 4 cut(s) 36, 50, 134, 238
BspACI CCGC 1 cut(s) 75
BspANI GGCC 1 cut(s) 204
BspPI GGATC 2 cut(s) 58, 142
BsrI ACTGG 1 cut(s) 32
BssMI GATC 4 cut(s) 36, 50, 134, 238
BstDEI CTNAG 2 cut(s) 159, 183
BstF5I GGATG 2 cut(s) 357, 427
BstKTI GATC 4 cut(s) 39, 53, 137, 241
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 4 cut(s) 36, 50, 134, 238
BstMWI GCNNNNNNNGC 2 cut(s) 155, 323
BstX2I RGATCY 2 cut(s) 50, 134
BstYI RGATCY 2 cut(s) 50, 134
BsuRI GGCC 1 cut(s) 204
BtsCI GGATG 2 cut(s) 357, 427
BtsIMutI CAGTG 1 cut(s) 39
CaiI CAGNNNCTG 1 cut(s) 317
Cfr13I GGNCC 2 cut(s) 29, 438
CviAII CATG 3 cut(s) 290, 303, 328
CviJI RGCY 8 cut(s) 118, 149, 172, 191, 204, 220, 307, 317
CviKI_1 RGCY 8 cut(s) 118, 149, 172, 191, 204, 220, 307, 317
DdeI CTNAG 2 cut(s) 159, 183
DpnI GATC 4 cut(s) 38, 52, 136, 240
DpnII GATC 4 cut(s) 36, 50, 134, 238
EaeI YGGCCR 1 cut(s) 202
Eco47I GGWCC 2 cut(s) 29, 438
EcoRI GAATTC 1 cut(s) 164
FaeI CATG 3 cut(s) 293, 306, 331
FaiI YATR 6 cut(s) 243, 291, 304, 329, 355, 365
FatI CATG 3 cut(s) 289, 302, 327
FbaI TGATCA 2 cut(s) 36, 238
FokI GGATG 2 cut(s) 344, 434
FspBI CTAG 1 cut(s) 131
HaeIII GGCC 1 cut(s) 204
Hin1II CATG 3 cut(s) 293, 306, 331
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 3 cut(s) 147, 170, 218
HinfI GANTC 2 cut(s) 248, 343
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 2 cut(s) 142, 377
Hpy188I TCNGA 2 cut(s) 50, 55
Hpy188III TCNNGA 2 cut(s) 402, 441
Hpy8I GTNNAC 2 cut(s) 142, 377
HpyCH4V TGCA 1 cut(s) 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 323
HpyF3I CTNAG 2 cut(s) 159, 183
Hsp92II CATG 3 cut(s) 293, 306, 331
Ksp22I TGATCA 2 cut(s) 36, 238
Kzo9I GATC 4 cut(s) 36, 50, 134, 238
LmnI GCTCC 2 cut(s) 90, 123
LpnPI CCDG 1 cut(s) 45
MaeI CTAG 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 344
MalI GATC 4 cut(s) 38, 52, 136, 240
MboI GATC 4 cut(s) 36, 50, 134, 238
MboII GAAGA 1 cut(s) 425
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 2 cut(s) 50, 134
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 4 cut(s) 78, 164, 209, 393
MlyI GAGTC 1 cut(s) 352
MnlI CCTC 3 cut(s) 31, 217, 286
MslI CAYNNNNRTG 1 cut(s) 362
MunI CAATTG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 155, 323
NdeII GATC 4 cut(s) 36, 50, 134, 238
NlaIII CATG 3 cut(s) 293, 306, 331
NmuCI GTSAC 1 cut(s) 344
PfeI GAWTC 1 cut(s) 248
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
PspPI GGNCC 2 cut(s) 29, 438
PstNI CAGNNNCTG 1 cut(s) 317
PsuI RGATCY 2 cut(s) 50, 134
RseI CAYNNNNRTG 1 cut(s) 362
Sau3AI GATC 4 cut(s) 36, 50, 134, 238
Sau96I GGNCC 2 cut(s) 29, 438
SchI GAGTC 1 cut(s) 352
SduI GDGCHC 1 cut(s) 95
SetI ASST 7 cut(s) 87, 120, 151, 174, 222, 297, 319
SinI GGWCC 2 cut(s) 29, 438
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 4 cut(s) 78, 164, 209, 393
SsiI CCGC 1 cut(s) 75
SspMI CTAG 1 cut(s) 131
TaqI TCGA 1 cut(s) 298
TasI AATT 4 cut(s) 78, 164, 209, 393
TfiI GAWTC 1 cut(s) 248
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 1 cut(s) 351
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 2 cut(s) 29, 438
XapI RAATTY 1 cut(s) 164
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.