Rh6DG137300

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
N/A
Physical Location & Seq
Forward (+)
19632321 .. 19655840
23520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG137300.1

Sequence Viewer

Length: 453 bp
ATGTTTTTGTCTTCAGCGAATCAAACTCACTGTAAGTCCTCTCCTTCTCCATCTTTCCCCAAATTTACAATGGGAAAGAAGAAATCCACCGGTACTGAAAATGAGGGATCTGGAAAACAAAAAACCACACAGCCGAATGAGGTTGTGGGAACTCCGAGTTATATGTGCCCTGAGCTTCTTGCCGATATACCATATGGTTCTAAGTCAGATATTTGGTCTCTACGGTGCTGTATATATGAAATGGCCGCTCACAAGCCAGCATTTAAAGCCTTTGATATACAATCTCTGATCAACAAAATCAACAAGTCAATAGTGGCTCCACTTCCAACGTTAGCGCTATACGGTGGTCAACTAGAAAGATTCTTCTCGACTACAGTTGAAGTCATTGAACTCACAATACTCTTCTCCTCTAGCCCCTACATGTTGTTCATATCTCGGTCTCTGATAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

150

Amino Acids

16.51

Weight (kDa)

8.9

Isoelectric Point (pI)

55.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 42 - 102 2.3e-12 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 248
AciI CCGC 1 cut(s) 246
AclI AACGTT 1 cut(s) 329
AclWI GGATC 1 cut(s) 115
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 62
AfaI GTAC 1 cut(s) 94
AfeI AGCGCT 1 cut(s) 336
AflIII ACRYGT 1 cut(s) 420
AgeI ACCGGT 1 cut(s) 89
AgsI TTSAA 2 cut(s) 380, 389
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
Alw26I GTCTC 2 cut(s) 222, 444
AlwI GGATC 1 cut(s) 115
Aor51HI AGCGCT 1 cut(s) 336
AoxI GGCC 1 cut(s) 243
ApoI RAATTY 1 cut(s) 62
AsiGI ACCGGT 1 cut(s) 89
AspLEI GCGC 1 cut(s) 337
BaeGI GKGCMC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 3
BccI CCATC 1 cut(s) 58
BclI TGATCA 1 cut(s) 288
BcoDI GTCTC 2 cut(s) 222, 444
BfaI CTAG 2 cut(s) 353, 411
BfmI CTRYAG 1 cut(s) 372
BfoI RGCGCY 1 cut(s) 338
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 318
BpiI GAAGAC 1 cut(s) 3
Bpu10I CCTNAGC 1 cut(s) 171
BsaI GGTCTC 2 cut(s) 222, 444
BsaWI WCCGGW 1 cut(s) 89
Bse118I RCCGGY 1 cut(s) 89
BseMII CTCAG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 397
BseSI GKGCMC 1 cut(s) 170
BshFI GGCC 1 cut(s) 245
BshTI ACCGGT 1 cut(s) 89
BsiSI CCGG 1 cut(s) 90
BsmAI GTCTC 2 cut(s) 222, 444
BsnI GGCC 1 cut(s) 245
Bso31I GGTCTC 2 cut(s) 222, 444
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 107, 288
BspACI CCGC 1 cut(s) 246
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 318
BspPI GGATC 1 cut(s) 115
BspTNI GGTCTC 2 cut(s) 222, 444
BsrBI CCGCTC 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 89
BssMI GATC 2 cut(s) 107, 288
Bst4CI ACNGT 4 cut(s) 32, 225, 344, 376
Bst6I CTCTTC 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 2 cut(s) 171, 201
BstH2I RGCGCY 1 cut(s) 338
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 2 cut(s) 110, 291
BstMAI GTCTC 2 cut(s) 222, 444
BstMBI GATC 2 cut(s) 107, 288
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNSI RCATGY 1 cut(s) 424
BstSFI CTRYAG 1 cut(s) 372
BstSLI GKGCMC 1 cut(s) 170
BstV2I GAAGAC 1 cut(s) 3
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
BsuRI GGCC 1 cut(s) 245
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 258
CfoI GCGC 1 cut(s) 337
Cfr10I RCCGGY 1 cut(s) 89
Csp6I GTAC 1 cut(s) 93
CspAI ACCGGT 1 cut(s) 89
CviAII CATG 2 cut(s) 421, 450
CviJI RGCY 7 cut(s) 133, 175, 245, 256, 269, 317, 414
CviKI_1 RGCY 7 cut(s) 133, 175, 245, 256, 269, 317, 414
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 2 cut(s) 171, 201
DpnI GATC 2 cut(s) 109, 290
DpnII GATC 2 cut(s) 107, 288
DraI TTTAAA 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco31I GGTCTC 2 cut(s) 222, 444
Eco47III AGCGCT 1 cut(s) 336
FaeI CATG 2 cut(s) 424, 453
FatI CATG 2 cut(s) 420, 449
FauNDI CATATG 1 cut(s) 193
FbaI TGATCA 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 2 cut(s) 353, 411
GlaI GCGC 1 cut(s) 336
GluI GCNGC 1 cut(s) 246
HaeII RGCGCY 1 cut(s) 338
HaeIII GGCC 1 cut(s) 245
HapII CCGG 1 cut(s) 90
HhaI GCGC 1 cut(s) 337
Hin1II CATG 2 cut(s) 424, 453
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HincII GTYRAC 1 cut(s) 350
HindII GTYRAC 1 cut(s) 350
HinfI GANTC 2 cut(s) 19, 360
HpaII CCGG 1 cut(s) 90
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 4 cut(s) 156, 208, 288, 444
Hpy188III TCNNGA 2 cut(s) 111, 367
Hpy8I GTNNAC 1 cut(s) 350
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 4 cut(s) 32, 225, 344, 376
HpyCH4IV ACGT 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 2 cut(s) 171, 201
HpySE526I ACGT 1 cut(s) 329
Hsp92II CATG 2 cut(s) 424, 453
HspAI GCGC 1 cut(s) 335
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 2 cut(s) 107, 288
LmnI GCTCC 1 cut(s) 322
LpnPI CCDG 4 cut(s) 96, 103, 183, 270
MaeI CTAG 2 cut(s) 353, 411
MaeII ACGT 1 cut(s) 329
MalI GATC 2 cut(s) 109, 290
MbiI CCGCTC 1 cut(s) 248
MboI GATC 2 cut(s) 107, 288
MboII GAAGA 4 cut(s) 3, 91, 355, 394
MflI RGATCY 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 350
MnlI CCTC 4 cut(s) 49, 97, 133, 418
MseI TTAA 1 cut(s) 264
MspI CCGG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 266
NdeI CATATG 1 cut(s) 193
NdeII GATC 2 cut(s) 107, 288
NlaIII CATG 2 cut(s) 424, 453
NlaIV GGNNCC 1 cut(s) 318
NspI RCATGY 1 cut(s) 424
PciI ACATGT 1 cut(s) 420
PfeI GAWTC 2 cut(s) 19, 360
PinAI ACCGGT 1 cut(s) 89
PkrI GCNGC 1 cut(s) 247
PscI ACATGT 1 cut(s) 420
Psp1406I AACGTT 1 cut(s) 329
PspN4I GGNNCC 1 cut(s) 318
PsrI GAACNNNNNNTAC 2 cut(s) 381, 413
PsuI RGATCY 1 cut(s) 107
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 2 cut(s) 107, 288
SduI GDGCHC 1 cut(s) 170
SetI ASST 3 cut(s) 144, 177, 332
SfcI CTRYAG 1 cut(s) 372
Sse9I AATT 1 cut(s) 62
SsiI CCGC 1 cut(s) 246
SspMI CTAG 2 cut(s) 353, 411
TaaI ACNGT 4 cut(s) 32, 225, 344, 376
TaiI ACGT 1 cut(s) 332
TaqI TCGA 1 cut(s) 368
TaqII GACCGA 1 cut(s) 426
TasI AATT 1 cut(s) 62
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 2 cut(s) 19, 360
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 1 cut(s) 35
TspDTI ATGAA 2 cut(s) 252, 418
TspRI CASTG 1 cut(s) 35
XapI RAATTY 1 cut(s) 62
XceI RCATGY 1 cut(s) 424
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XspI CTAG 2 cut(s) 353, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.