Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

33185398 .. 33185811

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG186700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAAGCTCTAGATATAAGCGCGAAGCTCCTCGAGAAAAACCCCGAGTGCTACACCGCCTGGAATTACAGAAAGCTCGCCATCCAGCACAACCTCCCAGCCGTTCAGTCCGACTCCAATTTCGATTCCGACGCGATCAAGGCTATTCTCGACCTGGAACTGAAAGTGGTGGTGGATGCGTTGAAGCAAAATTACAAGTCCTATGGAGTTTGGCACCATCGTAAATGGGTACTGAGCAAGGGGCATTGTTCTTTAGACCATGAACTGAAGCTTCTCAAAAAGTTCAAGAATTGTAGTCCAAGAATTTCAGATTTTGTGCTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008318 GO:0009987 GO:0010035 GO:0010038 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0031267 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036211 GO:0042221 GO:0042981 GO:0043067 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050789 GO:0050794 GO:0050877 GO:0050896 GO:0050953 GO:0051020 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097354 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_6 PPTA

Protein Analysis

108

Amino Acids

12.5

Weight (kDa)

8.76

Isoelectric Point (pI)

23.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPTA	PF01239	2 - 30	4.2e-08	Protein prenyltransferase alpha subunit repeat
PPTA	PF01239	51 - 80	5.1e-07	Protein prenyltransferase alpha subunit repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	213
AccII	CGCG	2 cut(s)	23, 134
AciI	CCGC	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	287
AfaI	GTAC	1 cut(s)	231
AgsI	TTSAA	2 cut(s)	184, 286
AjnI	CCWGG	2 cut(s)	59, 153
AluBI	AGCT	4 cut(s)	8, 28, 76, 271
AluI	AGCT	4 cut(s)	8, 28, 76, 271
Ama87I	CYCGRG	2 cut(s)	32, 44
ApoI	RAATTY	1 cut(s)	303
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AspLEI	GCGC	1 cut(s)	23
AvaI	CYCGRG	2 cut(s)	32, 44
BanI	GGYRCC	1 cut(s)	213
BarI	GAAGNNNNNNTAC	2 cut(s)	176, 208
BccI	CCATC	2 cut(s)	89, 225
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	61, 155
BfaI	CTAG	1 cut(s)	11
Bme1390I	CCNGG	2 cut(s)	61, 155
BmeT110I	CYCGRG	2 cut(s)	32, 44
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	2 cut(s)	61, 155
BmsI	GCATC	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	61, 155
BseGI	GGATG	2 cut(s)	81, 181
BseMII	CTCAG	1 cut(s)	224
BseRI	GAGGAG	1 cut(s)	20
BseYI	CCCAGC	1 cut(s)	97
Bsh1236I	CGCG	2 cut(s)	23, 134
BshNI	GGYRCC	1 cut(s)	213
BsiHKCI	CYCGRG	2 cut(s)	32, 44
BsoBI	CYCGRG	2 cut(s)	32, 44
Bsp143I	GATC	1 cut(s)	135
BspACI	CCGC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	225
BspFNI	CGCG	2 cut(s)	23, 134
BspLI	GGNNCC	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	213
BssMI	GATC	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	61, 155
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	233
BstF5I	GGATG	2 cut(s)	81, 181
BstFNI	CGCG	2 cut(s)	23, 134
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	2 cut(s)	61, 155
BstSCI	CCNGG	2 cut(s)	59, 153
BstUI	CGCG	2 cut(s)	23, 134
BtsCI	GGATG	2 cut(s)	81, 181
Cac8I	GCNNGC	1 cut(s)	78
CfoI	GCGC	1 cut(s)	23
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	230
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	6 cut(s)	8, 28, 76, 101, 143, 271
CviKI_1	RGCY	6 cut(s)	8, 28, 76, 101, 143, 271
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	287
Eco88I	CYCGRG	2 cut(s)	32, 44
EcoRII	CCWGG	2 cut(s)	59, 153
FaeI	CATG	1 cut(s)	263
FaiI	YATR	3 cut(s)	17, 204, 261
FatI	CATG	1 cut(s)	259
FokI	GGATG	2 cut(s)	68, 188
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	22
GsaI	CCCAGC	1 cut(s)	101
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	2 cut(s)	113, 125
Hpy188I	TCNGA	3 cut(s)	112, 130, 310
Hpy188III	TCNNGA	4 cut(s)	11, 34, 149, 286
Hpy99I	CGWCG	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	233
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	6 cut(s)	46, 73, 98, 111, 140, 167
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	11
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MluCI	AATT	6 cut(s)	64, 118, 190, 289, 303, 322
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	2 cut(s)	135, 153
MnlI	CCTC	2 cut(s)	41, 104
MseI	TTAA	1 cut(s)	325
MspR9I	CCNGG	2 cut(s)	61, 155
MvaI	CCWGG	2 cut(s)	61, 155
MvnI	CGCG	2 cut(s)	23, 134
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	215
PaeR7I	CTCGAG	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	125
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Psp6I	CCWGG	2 cut(s)	59, 153
PspFI	CCCAGC	1 cut(s)	97
PspGI	CCWGG	2 cut(s)	59, 153
PspN4I	GGNNCC	1 cut(s)	215
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	325
Sau3AI	GATC	1 cut(s)	135
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	61, 155
SetI	ASST	6 cut(s)	10, 30, 78, 96, 156, 273
SfaNI	GCATC	1 cut(s)	166
Sfr274I	CTCGAG	1 cut(s)	32
SlaI	CTCGAG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	6 cut(s)	64, 118, 190, 289, 303, 322
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	2 cut(s)	59, 153
TaqI	TCGA	3 cut(s)	33, 123, 150
TasI	AATT	6 cut(s)	64, 118, 190, 289, 303, 322
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	325
Tru9I	TTAA	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	276
XapI	RAATTY	1 cut(s)	303
XbaI	TCTAGA	1 cut(s)	10
XhoI	CTCGAG	1 cut(s)	32
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.