Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

37105184 .. 37107209

Gene Structure 2026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG208600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGCCTTCCTTATACCAATTTCAAATTCTTCCCAGCTTGCTGTCGATCAGGGCCTCCATGCTTGATTCAGGTAACTTGGTCCTCTACAATTCTGATTCAAACATCATTTGGCAGACTTTTGATATTCCAACAGATACCATTGTATCCGGGCAGCGTCTGTTGGCTGGAACAAAGCTCATCTCCTCCATATCAAAGACGAATCACGCAAGTGGAAGATTTAAAGTGGTCATGCAAAGAGATGGCAACTTGGTTCAATATCCAAATATTGATCAATTTACATTGAGTTCTGATGAATATTCTTATTGGAACCCGGGGACATTCAGTGCTGGGAACAATGTGTCCCTCAATCTTGATCAAAATGGGGGGCTCTATCTTCTTAATTCCACTGGTTTAAAGATAAGAAGTTTTCCACTTAAGAATGGCCTTTCTATGTATCGTAGCTATCGCCTGACGATTGATGCTGATGGAATACTCCGGTTGTACTCCTACAGTTTGGTTAAGAATAATTCTTGGTCAATTGAGTGGTCACCAACTGATGGTAAATGTGCTCCTATTGGCCTTTGTGGCCTAAATTCTTACTGTGTTCTTGTGGATCAGGAATCTTCTTGTGTATGTCTCCCTGGTTTCGTTTTCATCGACGAGGGCCAAAAATATTTAGGCTGCAAGAGAAACTTGAGTACAATTGGTTGCAAAGGTGAGAATGAAACTTCATATTCTATTGTTGATGTCAATAACATAAATTGGGAAAGCACTCCATACTCTGTTCTATCATTGGATAAGACTGCTTGTAAAGAGGACTGTTTGATGGATTGTAACTGTGAAGCTGCGATATTTACGGACCAGCAGTGCAGAAAACAAAAGCTCCCTCTAAGATTTGGAAGAACTCCCCAACGCGCTGTGGTGACAACCTTTGTCAAAAAGGGTACTACTGATGAGAGTTCAGGTGTAAAATGGTTGAGCAAGGAAAGAAAAAATGTTGACAGTGTCAAATTTATCAGCAGCATTGCAACTTTAACTTTTTCACTAGTTATTATGGCAATTACAGGTGTTGTTATATATAGATATCGTGTTTGGGATTACCGAAAGGTTACAAATTCTGCTGGTGAAGGGTTAATTGAAGGTTCCACCATGGACATACCTGAGGATCTATTAACTCTTGAGAATTGGATGTACCATTGTTTGGAGGCCAATGAACTGGATAAGCTAGTGAAGGATGATGATGAGATTGACACGAGCAAACTACGGGAGATGGTTAAGCTTGGTCTTTGCTGCATCCAAGAGGAACCATCATTACGCCCTTTGATGACGAAGGTGGTACTAATGCTGGAAGGGATACTAGAGATACCATCCCCTCCAAATTCTTTTAGTTCCAGACATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

460

Amino Acids

51.52

Weight (kDa)

5.4

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	17 - 54	6.2e-08	D-mannose binding lectin
S_locus_glycop	PF00954	145 - 210	1.5e-06	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	536, 1180
AccII	CGCG	1 cut(s)	894
AclWI	GGATC	2 cut(s)	600, 1152
AcsI	RAATTY	5 cut(s)	24, 571, 989, 1093, 1357
AfaI	GTAC	5 cut(s)	482, 679, 925, 1172, 1317
AfiI	CCNNNNNNNGG	2 cut(s)	536, 1180
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	4 cut(s)	23, 99, 254, 1118
AhlI	ACTAGT	1 cut(s)	1024
AjnI	CCWGG	1 cut(s)	619
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AleI	CACNNNNGTG	1 cut(s)	207
AloI	GAACNNNNNNTCC	2 cut(s)	323, 355
AluBI	AGCT	7 cut(s)	36, 175, 441, 824, 862, 1204, 1258
AluI	AGCT	7 cut(s)	36, 175, 441, 824, 862, 1204, 1258
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	1 cut(s)	620
AlwI	GGATC	2 cut(s)	600, 1152
AlwNI	CAGNNNCTG	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	310
AoxI	GGCC	6 cut(s)	51, 421, 556, 565, 643, 1185
ApeKI	GCWGC	5 cut(s)	151, 660, 824, 999, 1269
ApoI	RAATTY	5 cut(s)	24, 571, 989, 1093, 1357
AspLEI	GCGC	1 cut(s)	896
AspS9I	GGNCC	4 cut(s)	51, 79, 643, 838
AsuC2I	CCSGG	3 cut(s)	148, 311, 312
AsuHPI	GGTGA	4 cut(s)	519, 707, 913, 1115
AvaI	CYCGRG	1 cut(s)	310
AvaII	GGWCC	2 cut(s)	79, 838
AxyI	CCTNAGG	1 cut(s)	1140
BaeI	ACNNNNGTAYC	4 cut(s)	126, 126, 159, 159
BanII	GRGCYC	1 cut(s)	369
BauI	CACGAG	1 cut(s)	1231
Bbv12I	GWGCWC	1 cut(s)	550
BbvI	GCAGC	5 cut(s)	163, 647, 811, 1011, 1256
BccI	CCATC	7 cut(s)	233, 458, 530, 799, 1243, 1294, 1354
BciT130I	CCWGG	1 cut(s)	621
BciVI	GTATCC	2 cut(s)	154, 1326
BclI	TGATCA	2 cut(s)	268, 352
BcnI	CCSGG	3 cut(s)	148, 311, 312
BcoDI	GTCTC	1 cut(s)	620
BcuI	ACTAGT	1 cut(s)	1024
BfaI	CTAG	3 cut(s)	1025, 1205, 1337
BfmI	CTRYAG	1 cut(s)	487
BfrI	CTTAAG	1 cut(s)	413
BfuI	GTATCC	2 cut(s)	154, 1326
BglI	GCCNNNNNGGC	1 cut(s)	564
BisI	GCNGC	5 cut(s)	152, 661, 825, 1000, 1270
BlsI	GCNGC	5 cut(s)	153, 662, 826, 1001, 1271
Bme1390I	CCNGG	4 cut(s)	148, 311, 312, 621
Bme18I	GGWCC	2 cut(s)	79, 838
BmeT110I	CYCGRG	1 cut(s)	310
BmgT120I	GGNCC	4 cut(s)	51, 79, 643, 838
BmiI	GGNNCC	3 cut(s)	308, 1123, 1284
BmrFI	CCNGG	4 cut(s)	148, 311, 312, 621
BmsI	GCATC	2 cut(s)	448, 1281
BpuEI	CTTGAG	2 cut(s)	694, 1178
BpuMI	CCSGG	3 cut(s)	148, 311, 312
BsaJI	CCNNGG	4 cut(s)	310, 311, 619, 1128
BsaWI	WCCGGW	1 cut(s)	474
BsaXI	ACNNNNNCTCC	2 cut(s)	846, 876
Bsc4I	CCNNNNNNNGG	2 cut(s)	536, 1180
Bse1I	ACTGG	2 cut(s)	391, 1200
Bse21I	CCTNAGG	1 cut(s)	1140
Bse3DI	GCAATG	1 cut(s)	1002
BseBI	CCWGG	1 cut(s)	621
BseDI	CCNNGG	4 cut(s)	310, 311, 619, 1128
BseGI	GGATG	4 cut(s)	1173, 1219, 1272, 1346
BseLI	CCNNNNNNNGG	2 cut(s)	536, 1180
BseMI	GCAATG	1 cut(s)	1002
BseMII	CTCAG	1 cut(s)	1131
BseNI	ACTGG	2 cut(s)	391, 1200
BseRI	GAGGAG	1 cut(s)	172
BseXI	GCAGC	5 cut(s)	163, 647, 811, 1011, 1256
BseYI	CCCAGC	2 cut(s)	32, 326
BsgI	GTGCAG	1 cut(s)	868
Bsh1236I	CGCG	1 cut(s)	894
BshFI	GGCC	6 cut(s)	53, 423, 558, 567, 645, 1187
BsiHKAI	GWGCWC	1 cut(s)	550
BsiHKCI	CYCGRG	1 cut(s)	310
BsiSI	CCGG	3 cut(s)	147, 311, 475
BslFI	GGGAC	2 cut(s)	325, 328
BslI	CCNNNNNNNGG	2 cut(s)	536, 1180
BsmAI	GTCTC	1 cut(s)	620
BsmFI	GGGAC	2 cut(s)	325, 328
BsnI	GGCC	6 cut(s)	53, 423, 558, 567, 645, 1187
BsoBI	CYCGRG	1 cut(s)	310
Bsp1286I	GDGCHC	2 cut(s)	369, 550
Bsp143I	GATC	5 cut(s)	45, 268, 352, 592, 1144
Bsp19I	CCATGG	1 cut(s)	1128
BspANI	GGCC	6 cut(s)	53, 423, 558, 567, 645, 1187
BspCNI	CTCAG	1 cut(s)	1132
BspFNI	CGCG	1 cut(s)	894
BspLI	GGNNCC	3 cut(s)	308, 1123, 1284
BspPI	GGATC	2 cut(s)	600, 1152
BspTI	CTTAAG	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	1002
BsrI	ACTGG	2 cut(s)	391, 1200
BssECI	CCNNGG	4 cut(s)	310, 311, 619, 1128
BssMI	GATC	5 cut(s)	45, 268, 352, 592, 1144
BssSI	CACGAG	1 cut(s)	1231
BssT1I	CCWWGG	1 cut(s)	1128
Bst2BI	CACGAG	1 cut(s)	1231
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	5 cut(s)	491, 581, 800, 818, 983
BstAFI	CTTAAG	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	2 cut(s)	869, 1140
BstDSI	CCRYGG	1 cut(s)	1128
BstEII	GGTNACC	1 cut(s)	525
BstF5I	GGATG	4 cut(s)	1173, 1219, 1272, 1346
BstFNI	CGCG	1 cut(s)	894
BstHHI	GCGC	1 cut(s)	896
BstKTI	GATC	5 cut(s)	48, 271, 355, 595, 1147
BstMAI	GTCTC	1 cut(s)	620
BstMBI	GATC	5 cut(s)	45, 268, 352, 592, 1144
BstMWI	GCNNNNNNNGC	1 cut(s)	564
BstNI	CCWGG	1 cut(s)	621
BstPI	GGTNACC	1 cut(s)	525
BstSCI	CCNGG	4 cut(s)	146, 309, 310, 619
BstSFI	CTRYAG	1 cut(s)	487
BstUI	CGCG	1 cut(s)	894
BstV1I	GCAGC	5 cut(s)	163, 647, 811, 1011, 1256
BstX2I	RGATCY	1 cut(s)	1144
BstXI	CCANNNNNNTGG	1 cut(s)	1195
BstYI	RGATCY	1 cut(s)	1144
Bsu36I	CCTNAGG	1 cut(s)	1140
BsuI	GTATCC	2 cut(s)	154, 1326
BsuRI	GGCC	6 cut(s)	53, 423, 558, 567, 645, 1187
BtgI	CCRYGG	1 cut(s)	1128
BtsCI	GGATG	4 cut(s)	1173, 1219, 1272, 1346
BtsI	GCAGTG	1 cut(s)	851
BtsIMutI	CAGTG	4 cut(s)	328, 384, 851, 988
Cac8I	GCNNGC	1 cut(s)	38
CaiI	CAGNNNCTG	1 cut(s)	157
CfoI	GCGC	1 cut(s)	896
Cfr13I	GGNCC	4 cut(s)	51, 79, 643, 838
Cfr9I	CCCGGG	1 cut(s)	310
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	5 cut(s)	481, 678, 924, 1171, 1316
CviAII	CATG	4 cut(s)	58, 229, 1129, 1376
CviQI	GTAC	5 cut(s)	481, 678, 924, 1171, 1316
DdeI	CTNAG	2 cut(s)	869, 1140
DpnI	GATC	5 cut(s)	47, 270, 354, 594, 1146
DpnII	GATC	5 cut(s)	45, 268, 352, 592, 1144
DraI	TTTAAA	2 cut(s)	220, 393
Eco130I	CCWWGG	1 cut(s)	1128
Eco24I	GRGCYC	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	1064
Eco47I	GGWCC	2 cut(s)	79, 838
Eco81I	CCTNAGG	1 cut(s)	1140
Eco88I	CYCGRG	1 cut(s)	310
Eco91I	GGTNACC	1 cut(s)	525
EcoO109I	RGGNCCY	1 cut(s)	51
EcoO65I	GGTNACC	1 cut(s)	525
EcoRII	CCWGG	1 cut(s)	619
EcoRV	GATATC	1 cut(s)	1064
EcoT14I	CCWWGG	1 cut(s)	1128
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	1128
FaeI	CATG	4 cut(s)	61, 232, 1132, 1379
FalI	AAGNNNNNCTT	2 cut(s)	656, 688
FaqI	GGGAC	2 cut(s)	325, 328
FatI	CATG	4 cut(s)	57, 228, 1128, 1375
FbaI	TGATCA	2 cut(s)	268, 352
Fnu4HI	GCNGC	5 cut(s)	152, 661, 825, 1000, 1270
FokI	GGATG	4 cut(s)	1180, 1226, 1259, 1333
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	5 cut(s)	152, 661, 825, 1000, 1270
FspBI	CTAG	3 cut(s)	1025, 1205, 1337
GlaI	GCGC	1 cut(s)	895
GluI	GCNGC	5 cut(s)	152, 661, 825, 1000, 1270
GsaI	CCCAGC	2 cut(s)	36, 330
HaeIII	GGCC	6 cut(s)	53, 423, 558, 567, 645, 1187
HapII	CCGG	3 cut(s)	147, 311, 475
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	896
Hin1II	CATG	4 cut(s)	61, 232, 1132, 1379
Hin6I	GCGC	1 cut(s)	894
HinP1I	GCGC	1 cut(s)	894
HincII	GTYRAC	1 cut(s)	979
HindII	GTYRAC	1 cut(s)	979
HindIII	AAGCTT	1 cut(s)	1256
HinfI	GANTC	4 cut(s)	65, 95, 199, 599
HpaII	CCGG	3 cut(s)	147, 311, 475
HphI	GGTGA	4 cut(s)	519, 707, 913, 1115
Hpy166II	GTNNAC	1 cut(s)	979
Hpy188I	TCNGA	2 cut(s)	94, 289
Hpy188III	TCNNGA	4 cut(s)	350, 596, 1157, 1371
Hpy8I	GTNNAC	1 cut(s)	979
Hpy99I	CGWCG	1 cut(s)	641
HpyAV	CCTTC	6 cut(s)	15, 1100, 1112, 1204, 1303, 1322
HpyCH4III	ACNGT	5 cut(s)	491, 581, 800, 818, 983
HpyCH4V	TGCA	6 cut(s)	232, 663, 690, 849, 1007, 1272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	564
HpyF3I	CTNAG	2 cut(s)	869, 1140
Hsp92II	CATG	4 cut(s)	61, 232, 1132, 1379
HspAI	GCGC	1 cut(s)	894
Ksp22I	TGATCA	2 cut(s)	268, 352
Kzo9I	GATC	5 cut(s)	45, 268, 352, 592, 1144
LmnI	GCTCC	2 cut(s)	553, 867
Lsp1109I	GCAGC	5 cut(s)	163, 647, 811, 1011, 1256
LweI	GCATC	2 cut(s)	448, 1281
MaeI	CTAG	3 cut(s)	1025, 1205, 1337
MaeIII	GTNAC	5 cut(s)	71, 525, 812, 901, 1087
MalI	GATC	5 cut(s)	47, 270, 354, 594, 1146
MboI	GATC	5 cut(s)	45, 268, 352, 592, 1144
MboII	GAAGA	5 cut(s)	20, 225, 365, 594, 891
MfeI	CAATTG	2 cut(s)	516, 681
MflI	RGATCY	1 cut(s)	1144
MhlI	GDGCHC	2 cut(s)	369, 550
MmeI	TCCRAC	1 cut(s)	152
MseI	TTAA	9 cut(s)	219, 378, 392, 414, 498, 1013, 1112, 1151, 1254
MslI	CAYNNNNRTG	1 cut(s)	207
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	3 cut(s)	147, 311, 475
MspR9I	CCNGG	4 cut(s)	148, 311, 312, 621
MunI	CAATTG	2 cut(s)	516, 681
MvaI	CCWGG	1 cut(s)	621
MvnI	CGCG	1 cut(s)	894
MwoI	GCNNNNNNNGC	1 cut(s)	564
NciI	CCSGG	3 cut(s)	148, 311, 312
NcoI	CCATGG	1 cut(s)	1128
NdeII	GATC	5 cut(s)	45, 268, 352, 592, 1144
NlaIII	CATG	4 cut(s)	61, 232, 1132, 1379
NlaIV	GGNNCC	3 cut(s)	308, 1123, 1284
NmuCI	GTSAC	2 cut(s)	525, 901
OliI	CACNNNNGTG	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	633
PfeI	GAWTC	4 cut(s)	65, 95, 199, 599
PflFI	GACNNNGTC	1 cut(s)	983
PflMI	CCANNNNNTGG	2 cut(s)	536, 1180
PkrI	GCNGC	5 cut(s)	153, 662, 826, 1001, 1271
Psp6I	CCWGG	1 cut(s)	619
PspEI	GGTNACC	1 cut(s)	525
PspFI	CCCAGC	2 cut(s)	32, 326
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	3 cut(s)	308, 1123, 1284
PspPI	GGNCC	4 cut(s)	51, 79, 643, 838
PsrI	GAACNNNNNNTAC	2 cut(s)	1275, 1307
PstNI	CAGNNNCTG	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	1144
PsyI	GACNNNGTC	1 cut(s)	983
RsaI	GTAC	5 cut(s)	482, 679, 925, 1172, 1317
RsaNI	GTAC	5 cut(s)	481, 678, 924, 1171, 1316
RseI	CAYNNNNRTG	1 cut(s)	207
SaqAI	TTAA	9 cut(s)	219, 378, 392, 414, 498, 1013, 1112, 1151, 1254
SatI	GCNGC	5 cut(s)	152, 661, 825, 1000, 1270
Sau3AI	GATC	5 cut(s)	45, 268, 352, 592, 1144
Sau96I	GGNCC	4 cut(s)	51, 79, 643, 838
ScrFI	CCNGG	4 cut(s)	148, 311, 312, 621
SduI	GDGCHC	2 cut(s)	369, 550
SfaNI	GCATC	2 cut(s)	448, 1281
SfcI	CTRYAG	1 cut(s)	487
SfiI	GGCCNNNNNGGCC	1 cut(s)	564
SinI	GGWCC	2 cut(s)	79, 838
SmaI	CCCGGG	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	3 cut(s)	413, 673, 1157
SmoI	CTYRAG	3 cut(s)	413, 673, 1157
SpeI	ACTAGT	1 cut(s)	1024
SspI	AATATT	3 cut(s)	265, 296, 653
SspMI	CTAG	3 cut(s)	1025, 1205, 1337
StyD4I	CCNGG	4 cut(s)	146, 309, 310, 619
StyI	CCWWGG	1 cut(s)	1128
TaaI	ACNGT	5 cut(s)	491, 581, 800, 818, 983
TaqI	TCGA	2 cut(s)	44, 636
TatI	WGTACW	2 cut(s)	480, 677
TfiI	GAWTC	4 cut(s)	65, 95, 199, 599
Tru1I	TTAA	9 cut(s)	219, 378, 392, 414, 498, 1013, 1112, 1151, 1254
Tru9I	TTAA	9 cut(s)	219, 378, 392, 414, 498, 1013, 1112, 1151, 1254
TscAI	CASTG	4 cut(s)	328, 391, 851, 988
TseFI	GTSAC	2 cut(s)	525, 901
TseI	GCWGC	5 cut(s)	151, 660, 824, 999, 1269
Tsp45I	GTSAC	2 cut(s)	525, 901
TspDTI	ATGAA	5 cut(s)	306, 622, 699, 717, 1206
TspGWI	ACGGA	1 cut(s)	851
TspMI	CCCGGG	1 cut(s)	310
TspRI	CASTG	4 cut(s)	328, 391, 851, 988
Tth111I	GACNNNGTC	1 cut(s)	983
Van91I	CCANNNNNTGG	2 cut(s)	536, 1180
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	79, 838
XapI	RAATTY	5 cut(s)	24, 571, 989, 1093, 1357
XmaI	CCCGGG	1 cut(s)	310
XspI	CTAG	3 cut(s)	1025, 1205, 1337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.