Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

37194586 .. 37194966

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG208900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCAGGGAGATGGCAACCTGGTTCAGTATCCAATTGGCCCATTTACAGTGACAGGTGATCAATATGCTTATTGGAACACTGAGACATCCACAGCAGGGACCAATGTGTCCCTCAATCTTGATCAAAATGAGGGGCTCTATCTTCTTAATTCCACCAGTTTCAAGATAAGTAGTTTATTTTCTCTTCAGAATAGCCTTTCTATGAATCGTGGCTATCGTCTCATGATTGATGCTGATGGAATACTCCGGTTGTACTCCTACAGTTTGGGTCAGAATGATTCTTGGTCAATTGAGTGGTCACCACCAATTGTTGATAAGTGTGCTCCTCCTGGACTCTGTGGCCTAAATTCTTATTGTGTTCTTGGGGAACCGGAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

126

Amino Acids

13.86

Weight (kDa)

4.1

Isoelectric Point (pI)

23.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	2 cut(s)	18, 328
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	2 cut(s)	77, 224
AoxI	GGCC	2 cut(s)	37, 340
ApoI	RAATTY	1 cut(s)	346
AspS9I	GGNCC	2 cut(s)	38, 99
AsuHPI	GGTGA	2 cut(s)	68, 291
AvaII	GGWCC	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	325
BccI	CCATC	2 cut(s)	5, 230
BciT130I	CCWGG	2 cut(s)	20, 330
BciVI	GTATCC	1 cut(s)	39
BclI	TGATCA	2 cut(s)	58, 121
BcoDI	GTCTC	2 cut(s)	77, 224
BfmI	CTRYAG	1 cut(s)	259
BfuI	GTATCC	1 cut(s)	39
Bme1390I	CCNGG	2 cut(s)	20, 330
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	2 cut(s)	38, 99
BmiI	GGNNCC	3 cut(s)	100, 369, 375
BmrFI	CCNGG	2 cut(s)	20, 330
BmsI	GCATC	1 cut(s)	220
BsaWI	WCCGGW	2 cut(s)	246, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	156
BseBI	CCWGG	2 cut(s)	20, 330
BseGI	GGATG	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	315
BshFI	GGCC	2 cut(s)	39, 342
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	247, 371
BslFI	GGGAC	2 cut(s)	94, 112
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	2 cut(s)	77, 224
BsmBI	CGTCTC	1 cut(s)	224
BsmFI	GGGAC	2 cut(s)	94, 112
BsnI	GGCC	2 cut(s)	39, 342
Bsp1286I	GDGCHC	2 cut(s)	138, 325
Bsp143I	GATC	2 cut(s)	58, 121
BspANI	GGCC	2 cut(s)	39, 342
BspCNI	CTCAG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	3 cut(s)	100, 369, 375
BsrI	ACTGG	1 cut(s)	156
BssMI	GATC	2 cut(s)	58, 121
Bst2UI	CCWGG	2 cut(s)	20, 330
Bst4CI	ACNGT	2 cut(s)	49, 263
Bst6I	CTCTTC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	81
BstEII	GGTNACC	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	86
BstKTI	GATC	2 cut(s)	61, 124
BstMAI	GTCTC	2 cut(s)	77, 224
BstMBI	GATC	2 cut(s)	58, 121
BstNI	CCWGG	2 cut(s)	20, 330
BstPI	GGTNACC	1 cut(s)	297
BstSCI	CCNGG	2 cut(s)	18, 328
BstSFI	CTRYAG	1 cut(s)	259
BsuI	GTATCC	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	39, 342
BtsCI	GGATG	1 cut(s)	86
BtsIMutI	CAGTG	2 cut(s)	54, 78
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	38, 99
CsiI	ACCWGGT	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	5 cut(s)	39, 136, 195, 213, 342
CviKI_1	RGCY	5 cut(s)	39, 136, 195, 213, 342
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	2 cut(s)	60, 123
DpnII	GATC	2 cut(s)	58, 121
DrdI	GACNNNNNNGTC	1 cut(s)	106
DseDI	GACNNNNNNGTC	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	170
Eco91I	GGTNACC	1 cut(s)	297
EcoO65I	GGTNACC	1 cut(s)	297
EcoRII	CCWGG	2 cut(s)	18, 328
EcoT38I	GRGCYC	1 cut(s)	138
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	1 cut(s)	226
FaiI	YATR	3 cut(s)	66, 203, 224
FaqI	GGGAC	2 cut(s)	94, 112
FatI	CATG	1 cut(s)	222
FbaI	TGATCA	2 cut(s)	58, 121
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	39, 342
HapII	CCGG	2 cut(s)	247, 371
Hin1II	CATG	1 cut(s)	226
HinfI	GANTC	3 cut(s)	205, 278, 333
HpaII	CCGG	2 cut(s)	247, 371
HphI	GGTGA	2 cut(s)	68, 291
Hpy188I	TCNGA	2 cut(s)	189, 273
Hpy188III	TCNNGA	3 cut(s)	119, 163, 223
HpyCH4III	ACNGT	2 cut(s)	49, 263
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	226
Ksp22I	TGATCA	2 cut(s)	58, 121
Kzo9I	GATC	2 cut(s)	58, 121
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	8 cut(s)	5, 32, 39, 81, 169, 260, 315, 342
LweI	GCATC	1 cut(s)	220
MabI	ACCWGGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	49, 297
MalI	GATC	2 cut(s)	60, 123
MboI	GATC	2 cut(s)	58, 121
MboII	GAAGA	2 cut(s)	134, 176
MfeI	CAATTG	3 cut(s)	33, 288, 306
MhlI	GDGCHC	2 cut(s)	138, 325
MluCI	AATT	5 cut(s)	33, 148, 288, 306, 346
MlyI	GAGTC	1 cut(s)	327
MnlI	CCTC	3 cut(s)	122, 124, 336
MseI	TTAA	2 cut(s)	147, 379
MspI	CCGG	2 cut(s)	247, 371
MspR9I	CCNGG	2 cut(s)	20, 330
MunI	CAATTG	3 cut(s)	33, 288, 306
MvaI	CCWGG	2 cut(s)	20, 330
NdeII	GATC	2 cut(s)	58, 121
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	3 cut(s)	100, 369, 375
NmuCI	GTSAC	2 cut(s)	49, 297
PagI	TCATGA	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	205, 278
PfoI	TCCNGGA	1 cut(s)	328
PleI	GAGTC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	327
Psp6I	CCWGG	2 cut(s)	18, 328
PspEI	GGTNACC	1 cut(s)	297
PspGI	CCWGG	2 cut(s)	18, 328
PspN4I	GGNNCC	3 cut(s)	100, 369, 375
PspPI	GGNCC	2 cut(s)	38, 99
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	147, 379
Sau3AI	GATC	2 cut(s)	58, 121
Sau96I	GGNCC	2 cut(s)	38, 99
SchI	GAGTC	1 cut(s)	327
ScrFI	CCNGG	2 cut(s)	20, 330
SduI	GDGCHC	2 cut(s)	138, 325
SetI	ASST	3 cut(s)	21, 58, 379
SexAI	ACCWGGT	1 cut(s)	18
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	1 cut(s)	259
SinI	GGWCC	1 cut(s)	99
Sse9I	AATT	5 cut(s)	33, 148, 288, 306, 346
StyD4I	CCNGG	2 cut(s)	18, 328
TaaI	ACNGT	2 cut(s)	49, 263
TasI	AATT	5 cut(s)	33, 148, 288, 306, 346
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	2 cut(s)	205, 278
Tru1I	TTAA	2 cut(s)	147, 379
Tru9I	TTAA	2 cut(s)	147, 379
TscAI	CASTG	2 cut(s)	54, 85
TseFI	GTSAC	2 cut(s)	49, 297
Tsp45I	GTSAC	2 cut(s)	49, 297
TspDTI	ATGAA	1 cut(s)	218
TspRI	CASTG	2 cut(s)	54, 85
VpaK11BI	GGWCC	1 cut(s)	99
XapI	RAATTY	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.