Rh6DG256400
NAC Family

Transcription regulatory protein SNF2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
N/A
Physical Location & Seq
Reverse (-)
44656977 .. 44659473
2497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG256400.1

Sequence Viewer

Length: 261 bp
ATGTTGATTTTGAGATGTGTGTTGTTGCAAGATGAAGGTGACAATTGTGGAGGGGATGATTTGTTGGCAGACCTTGAAGATGCTTTTTTGAACCAACGTCACAAGTGCACTTCAGGTGTTGGATTAATTGAATCTAGGGAGAAGAGTTTCCAAAGCCACCTTCAGCATAGATTGGCCAGCTTGAAGGTTCTTCTTCCCAAGTTGAGAGCTCAGTTTATCTCTTGGCTTGGAAGCAACGAAAATCAGCAACTTGCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000182 GO:0000228 GO:0000785 GO:0000790 GO:0000902 GO:0001085 GO:0001101 GO:0001102 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005975 GO:0005984 GO:0005985 GO:0005987 GO:0006066 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006310 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006996 GO:0007154 GO:0007275 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009266 GO:0009267 GO:0009311 GO:0009313 GO:0009408 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010015 GO:0010035 GO:0010073 GO:0010074 GO:0010078 GO:0010154 GO:0010162 GO:0010231 GO:0010431 GO:0010453 GO:0010455 GO:0010468 GO:0010492 GO:0010556 GO:0010557 GO:0010570 GO:0010604 GO:0010628 GO:0010810 GO:0010811 GO:0016043 GO:0016049 GO:0016052 GO:0016462 GO:0016514 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019827 GO:0021700 GO:0022414 GO:0022611 GO:0022622 GO:0030155 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031491 GO:0031492 GO:0031494 GO:0031496 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032991 GO:0033554 GO:0033613 GO:0034198 GO:0034641 GO:0034645 GO:0034728 GO:0036003 GO:0040007 GO:0040008 GO:0042148 GO:0042221 GO:0042393 GO:0042594 GO:0042623 GO:0042766 GO:0043044 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043618 GO:0043620 GO:0043900 GO:0043902 GO:0043933 GO:0044107 GO:0044109 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044877 GO:0045595 GO:0045597 GO:0045785 GO:0045893 GO:0045927 GO:0045935 GO:0045944 GO:0046164 GO:0046352 GO:0046483 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048589 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051716 GO:0060255 GO:0060560 GO:0061412 GO:0061458 GO:0065007 GO:0070013 GO:0070577 GO:0070603 GO:0070784 GO:0070786 GO:0071496 GO:0071695 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090033 GO:0090304 GO:0097159 GO:0097437 GO:0098727 GO:0099402 GO:0140030 GO:0140033 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1900428 GO:1900430 GO:1901360 GO:1901363 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901700 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1904949 GO:1905392 GO:1990837 GO:1990928 GO:2000112 GO:2000217 GO:2000219 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 ko05225 map04714 map05225
Pfam Domains
Protein Families
Helicase_C SNF2_N SnAC

Protein Analysis

86

Amino Acids

9.68

Weight (kDa)

5.52

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 174
AcuI CTGAAG 2 cut(s) 96, 146
AgsI TTSAA 4 cut(s) 77, 91, 131, 184
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AluBI AGCT 2 cut(s) 180, 209
AluI AGCT 2 cut(s) 180, 209
Alw21I GWGCWC 2 cut(s) 110, 211
Alw44I GTGCAC 1 cut(s) 106
AoxI GGCC 1 cut(s) 174
ApaLI GTGCAC 1 cut(s) 106
AseI ATTAAT 1 cut(s) 125
Asp700I GAANNNNTTC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 110
BalI TGGCCA 1 cut(s) 176
BanII GRGCYC 1 cut(s) 211
Bbv12I GWGCWC 2 cut(s) 110, 211
BfaI CTAG 1 cut(s) 135
BmsI GCATC 1 cut(s) 70
BseGI GGATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 224
BseSI GKGCMC 1 cut(s) 110
BshFI GGCC 1 cut(s) 176
BsiHKAI GWGCWC 2 cut(s) 110, 211
BsnI GGCC 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 110, 211
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 61
BstSLI GKGCMC 1 cut(s) 110
BsuRI GGCC 1 cut(s) 176
BtsCI GGATG 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 178
CviJI RGCY 5 cut(s) 156, 176, 180, 209, 226
CviKI_1 RGCY 5 cut(s) 156, 176, 180, 209, 226
DdeI CTNAG 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
Ecl136II GAGCTC 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 209
Eco57I CTGAAG 2 cut(s) 96, 146
EcoICRI GAGCTC 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 211
FaiI YATR 1 cut(s) 168
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 211
FspBI CTAG 1 cut(s) 135
HaeIII GGCC 1 cut(s) 176
HinfI GANTC 1 cut(s) 131
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 108
Hpy8I GTNNAC 1 cut(s) 108
HpyAV CCTTC 3 cut(s) 29, 170, 178
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 3 cut(s) 28, 108, 254
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 1 cut(s) 97
LpnPI CCDG 2 cut(s) 99, 190
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 135
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 2 cut(s) 38, 98
MboII GAAGA 4 cut(s) 89, 154, 182, 185
MfeI CAATTG 1 cut(s) 43
MhlI GDGCHC 2 cut(s) 110, 211
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 2 cut(s) 43, 126
MluNI TGGCCA 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 1 cut(s) 44
Mox20I TGGCCA 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 146
MscI TGGCCA 1 cut(s) 176
MseI TTAA 1 cut(s) 125
Msp20I TGGCCA 1 cut(s) 176
MunI CAATTG 1 cut(s) 43
NmuCI GTSAC 2 cut(s) 38, 98
PdmI GAANNNNTTC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 131
PshBI ATTAAT 1 cut(s) 125
Psp124BI GAGCTC 1 cut(s) 211
SacI GAGCTC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 125
SduI GDGCHC 2 cut(s) 110, 211
SetI ASST 8 cut(s) 40, 75, 100, 118, 162, 182, 189, 211
SfaNI GCATC 1 cut(s) 70
Sse9I AATT 2 cut(s) 43, 126
SspMI CTAG 1 cut(s) 135
SstI GAGCTC 1 cut(s) 211
TaiI ACGT 1 cut(s) 100
TasI AATT 2 cut(s) 43, 126
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TseFI GTSAC 2 cut(s) 38, 98
Tsp45I GTSAC 2 cut(s) 38, 98
TspDTI ATGAA 1 cut(s) 48
VneI GTGCAC 1 cut(s) 106
VspI ATTAAT 1 cut(s) 125
XmnI GAANNNNTTC 1 cut(s) 146
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.