Rh6DG298300
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
N/A
Physical Location & Seq
Reverse (-)
49978849 .. 49984679
5831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG298300.1

Sequence Viewer

Length: 1290 bp
ATGCTTCTTCAGGGAGGAACGGGAATCCCCCACCTGAAGTGGTTTGGAGTTGAGGGTGACTACAATGTCATGGTTATTGATCTTCTGGGACCAAGTTTGGAAGATTTGTTCAACTATTGTAATAGGAAGTTTACATTGAAAACAGTTTTGATGCTTGCAGATCAATTAGTAAGTACTTTTGGCTATCCTTTACCATATGTTGAAAATGGCCCGGATTATAATTGTTTTTCCTTCTTCCACATTTCATCTTTTCAGATTAACAGAGTCGAGTACATGCACTCAAGAGGTTTCCTTCATCGTGATATAAAACCTGACAACTTCTTAATGGGCCTAGGGCGTAAAGCCAATCAGGTATATGCTATTGATTATGGCCTTGCAAAGAAGTATAGGGATCTCCAGACTCACAAACACATACCATACAGGGAGAACAAGAACCTCACAGGCACTGCCCGCTATGCAAGTGTTAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCACTTGGTTATGTGCTTATGTATTTCCTAAGAGGAAGCCTTCCCTGGCAAGGATTGAAGGCTGGCACAAAAAAGCAAAAATACGACAAAATCAGTGAAAAGAAAATGTCAACTCCTATAGAGGTGCTTTGCAGATCACATCCATCTGAGTTTGTATCCTACTTTCACTACTGCCGATCATTGCGGTTTGAAGACAAGCCGGATTATTCATACCTGAAGAGGCTTTTTCGAGACTTATTTATTCGAGAAGGTTATCAATTTGACTATGTATTTGACTGGACCGTACTGAAGTACCCCCAGATTGGTGGAAGCTCCAGAGGATGGCATTCCAGTGGAAAAGCAGGTGCAAATGCGGGACCATCTGGGGAAAGACCTGAAAGAGTCTCAGTTGGAAAAGAGATTCGAGAAAGATTCTCAGGTGCAGTTGAAGCATTTTCGAGGAGAAATACCACAGCTTCTAGTCCACGTCAAGATCACTACAAGCACAGGTCTTTTGAGGATGCAACTCCACCATCCCGAGACACGCCCCATGATTCTGAAAGGGGACGCAATTCCTCCCGATATATTAGCAGTTCAAGGAAGGCTGTGGCCAGCAGTAAGCCAAGTTCCTCAGGTGAGCCCAGTGAAGGTCGCACAAGCCGACTACTCTCAAACAGTAGCCGCCCGTCTACTGGGCACCACCGAGTTCATTCTGGGCATGAATCCAAGCGGCCTGTTGCTACAAGAGGGACCCGCGATGATCCTCTCCGTAGCTTCGAGCTCCTCTCAATCAGGAAGTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

429

Amino Acids

49.14

Weight (kDa)

9.67

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 89 - 200 1.4e-13 Protein kinase domain
Pkinase_fungal PF17667 94 - 179 2.3e-07 Fungal protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
AarI CACCTGC 1 cut(s) 842
AasI GACNNNNNNGTC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 842
AccB1I GGYRCC 1 cut(s) 1185
AccB7I CCANNNNNTGG 1 cut(s) 831
AccI GTMKAC 1 cut(s) 1178
AccII CGCG 1 cut(s) 1245
AciI CCGC 6 cut(s) 451, 694, 863, 1171, 1219, 1243
AclWI GGATC 2 cut(s) 399, 1244
AcoI YGGCCR 1 cut(s) 1098
AcuI CTGAAG 3 cut(s) 56, 746, 818
AfaI GTAC 4 cut(s) 175, 272, 795, 803
AfiI CCNNNNNNNGG 5 cut(s) 560, 812, 831, 1136, 1181
AgsI TTSAA 8 cut(s) 112, 139, 203, 485, 568, 701, 938, 1086
AjiI CACGTC 1 cut(s) 977
AjnI CCWGG 1 cut(s) 554
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 4 cut(s) 822, 965, 1263, 1270
AluI AGCT 4 cut(s) 822, 965, 1263, 1270
Alw21I GWGCWC 1 cut(s) 1272
Alw26I GTCTC 3 cut(s) 735, 898, 1023
AlwI GGATC 2 cut(s) 399, 1244
AlwNI CAGNNNCTG 1 cut(s) 446
Ama87I CYCGRG 1 cut(s) 1026
AoxI GGCC 5 cut(s) 208, 328, 370, 1098, 1220
ArsI GACNNNNNNTTYG 2 cut(s) 764, 796
AspA2I CCTAGG 1 cut(s) 331
AspS9I GGNCC 6 cut(s) 89, 209, 328, 789, 866, 1239
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 68, 1136
AvaI CYCGRG 1 cut(s) 1026
AvaII GGWCC 4 cut(s) 89, 789, 866, 1239
AvrII CCTAGG 1 cut(s) 331
AxyI CCTNAGG 1 cut(s) 1120
BaeGI GKGCMC 1 cut(s) 1188
BaeI ACNNNNGTAYC 2 cut(s) 785, 818
BalI TGGCCA 1 cut(s) 1100
BanI GGYRCC 1 cut(s) 1185
BanII GRGCYC 2 cut(s) 1131, 1272
BbsI GAAGAC 1 cut(s) 708
Bbv12I GWGCWC 1 cut(s) 1272
BccI CCATC 4 cut(s) 661, 825, 877, 1030
BciT130I CCWGG 1 cut(s) 556
BciVI GTATCC 1 cut(s) 676
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 3 cut(s) 735, 898, 1023
BfaI CTAG 2 cut(s) 332, 969
BfmI CTRYAG 1 cut(s) 627
BfuAI ACCTGC 1 cut(s) 842
BfuI GTATCC 1 cut(s) 676
BisI GCNGC 2 cut(s) 1171, 1220
BlnI CCTAGG 1 cut(s) 331
BlsI GCNGC 2 cut(s) 1172, 1221
BmcAI AGTACT 1 cut(s) 175
Bme1390I CCNGG 2 cut(s) 212, 556
Bme18I GGWCC 4 cut(s) 89, 789, 866, 1239
BmeT110I CYCGRG 1 cut(s) 1026
BmgBI CACGTC 1 cut(s) 977
BmgT120I GGNCC 6 cut(s) 89, 209, 328, 789, 866, 1239
BmiI GGNNCC 5 cut(s) 90, 867, 1187, 1240, 1241
BmrFI CCNGG 2 cut(s) 212, 556
BmrI ACTGGG 2 cut(s) 1125, 1191
BmsI GCATC 2 cut(s) 141, 1000
BmuI ACTGGG 2 cut(s) 1125, 1191
BpiI GAAGAC 1 cut(s) 708
BplI GAGNNNNNCTC 1 cut(s) 1259
BpmI CTGGAG 2 cut(s) 380, 808
BpuEI CTTGAG 1 cut(s) 265
BpuMI CCSGG 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 331, 554
Bsc4I CCNNNNNNNGG 5 cut(s) 560, 812, 831, 1136, 1181
Bse1I ACTGG 4 cut(s) 791, 840, 1131, 1186
Bse21I CCTNAGG 1 cut(s) 1120
Bse3DI GCAATG 1 cut(s) 689
BseBI CCWGG 1 cut(s) 556
BseDI CCNNGG 2 cut(s) 331, 554
BseGI GGATG 5 cut(s) 505, 649, 836, 1015, 1022
BseLI CCNNNNNNNGG 5 cut(s) 560, 812, 831, 1136, 1181
BseMI GCAATG 1 cut(s) 689
BseMII CTCAG 4 cut(s) 648, 909, 939, 1134
BseNI ACTGG 4 cut(s) 791, 840, 1131, 1186
BseRI GAGGAG 2 cut(s) 964, 1262
BseSI GKGCMC 1 cut(s) 1188
BsgI GTGCAG 1 cut(s) 951
Bsh1236I CGCG 1 cut(s) 1245
BshFI GGCC 5 cut(s) 210, 330, 372, 1100, 1222
BshNI GGYRCC 1 cut(s) 1185
BsiHKAI GWGCWC 1 cut(s) 1272
BsiHKCI CYCGRG 1 cut(s) 1026
BsiSI CCGG 2 cut(s) 212, 710
BslFI GGGAC 4 cut(s) 102, 879, 1068, 1252
BslI CCNNNNNNNGG 5 cut(s) 560, 812, 831, 1136, 1181
BsmAI GTCTC 3 cut(s) 735, 898, 1023
BsmFI GGGAC 4 cut(s) 102, 879, 1068, 1252
BsmI GAATGC 1 cut(s) 835
BsnI GGCC 5 cut(s) 210, 330, 372, 1100, 1222
BsoBI CYCGRG 1 cut(s) 1026
Bsp1286I GDGCHC 3 cut(s) 1131, 1188, 1272
Bsp143I GATC 8 cut(s) 79, 160, 391, 502, 644, 686, 982, 1249
BspACI CCGC 6 cut(s) 451, 694, 863, 1171, 1219, 1243
BspANI GGCC 5 cut(s) 210, 330, 372, 1100, 1222
BspCNI CTCAG 4 cut(s) 649, 908, 938, 1133
BspFNI CGCG 1 cut(s) 1245
BspLI GGNNCC 5 cut(s) 90, 867, 1187, 1240, 1241
BspMI ACCTGC 1 cut(s) 842
BspPI GGATC 2 cut(s) 399, 1244
BspT107I GGYRCC 1 cut(s) 1185
BsrDI GCAATG 1 cut(s) 689
BsrI ACTGG 4 cut(s) 791, 840, 1131, 1186
BssECI CCNNGG 2 cut(s) 331, 554
BssMI GATC 8 cut(s) 79, 160, 391, 502, 644, 686, 982, 1249
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 1 cut(s) 556
Bst4CI ACNGT 3 cut(s) 145, 793, 1166
Bst6I CTCTTC 1 cut(s) 722
BstC8I GCNNGC 4 cut(s) 156, 451, 574, 1102
BstDEI CTNAG 5 cut(s) 539, 657, 895, 925, 1120
BstF5I GGATG 5 cut(s) 505, 649, 836, 1015, 1022
BstFNI CGCG 1 cut(s) 1245
BstKTI GATC 8 cut(s) 82, 163, 394, 505, 647, 689, 985, 1252
BstMAI GTCTC 3 cut(s) 735, 898, 1023
BstMBI GATC 8 cut(s) 79, 160, 391, 502, 644, 686, 982, 1249
BstMWI GCNNNNNNNGC 3 cut(s) 450, 455, 938
BstNI CCWGG 1 cut(s) 556
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 2 cut(s) 210, 554
BstSFI CTRYAG 1 cut(s) 627
BstSLI GKGCMC 1 cut(s) 1188
BstUI CGCG 1 cut(s) 1245
BstV2I GAAGAC 1 cut(s) 708
BstX2I RGATCY 1 cut(s) 391
BstXI CCANNNNNNTGG 1 cut(s) 815
BstYI RGATCY 1 cut(s) 391
Bsu36I CCTNAGG 1 cut(s) 1120
BsuI GTATCC 1 cut(s) 676
BsuRI GGCC 5 cut(s) 210, 330, 372, 1100, 1222
BtgZI GCGATG 1 cut(s) 1260
BtrI CACGTC 1 cut(s) 977
BtsCI GGATG 5 cut(s) 505, 649, 836, 1015, 1022
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 4 cut(s) 444, 610, 847, 1138
BveI ACCTGC 1 cut(s) 842
Cac8I GCNNGC 4 cut(s) 156, 451, 574, 1102
CaiI CAGNNNCTG 1 cut(s) 446
Cfr13I GGNCC 6 cut(s) 89, 209, 328, 789, 866, 1239
CseI GACGC 1 cut(s) 1065
Csp6I GTAC 4 cut(s) 174, 271, 794, 802
CviAII CATG 4 cut(s) 70, 274, 1040, 1208
CviQI GTAC 4 cut(s) 174, 271, 794, 802
DdeI CTNAG 5 cut(s) 539, 657, 895, 925, 1120
DpnI GATC 8 cut(s) 81, 162, 393, 504, 646, 688, 984, 1251
DpnII GATC 8 cut(s) 79, 160, 391, 502, 644, 686, 982, 1249
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
EaeI YGGCCR 1 cut(s) 1098
Eam1104I CTCTTC 1 cut(s) 722
EarI CTCTTC 1 cut(s) 722
Ecl136II GAGCTC 1 cut(s) 1270
Eco130I CCWWGG 1 cut(s) 331
Eco24I GRGCYC 2 cut(s) 1131, 1272
Eco47I GGWCC 4 cut(s) 89, 789, 866, 1239
Eco53kI GAGCTC 1 cut(s) 1270
Eco57I CTGAAG 3 cut(s) 56, 746, 818
Eco81I CCTNAGG 1 cut(s) 1120
Eco88I CYCGRG 1 cut(s) 1026
EcoICRI GAGCTC 1 cut(s) 1270
EcoO109I RGGNCCY 1 cut(s) 1239
EcoRII CCWGG 1 cut(s) 554
EcoT14I CCWWGG 1 cut(s) 331
EcoT38I GRGCYC 2 cut(s) 1131, 1272
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 4 cut(s) 73, 277, 1043, 1211
FaqI GGGAC 4 cut(s) 102, 879, 1068, 1252
FatI CATG 4 cut(s) 69, 273, 1039, 1207
FauI CCCGC 3 cut(s) 458, 856, 1250
FauNDI CATATG 1 cut(s) 196
FblI GTMKAC 1 cut(s) 1178
Fnu4HI GCNGC 2 cut(s) 1171, 1220
FokI GGATG 5 cut(s) 512, 636, 843, 1009, 1022
FriOI GRGCYC 2 cut(s) 1131, 1272
Fsp4HI GCNGC 2 cut(s) 1171, 1220
FspBI CTAG 2 cut(s) 332, 969
GluI GCNGC 2 cut(s) 1171, 1220
GsuI CTGGAG 2 cut(s) 380, 808
HaeIII GGCC 5 cut(s) 210, 330, 372, 1100, 1222
HapII CCGG 2 cut(s) 212, 710
HgaI GACGC 1 cut(s) 1065
Hin1II CATG 4 cut(s) 73, 277, 1043, 1211
HincII GTYRAC 2 cut(s) 466, 621
HindII GTYRAC 2 cut(s) 466, 621
HinfI GANTC 9 cut(s) 24, 264, 400, 509, 891, 910, 921, 1043, 1211
HpaI GTTAAC 1 cut(s) 466
HpaII CCGG 2 cut(s) 212, 710
HphI GGTGA 2 cut(s) 68, 1136
Hpy166II GTNNAC 5 cut(s) 132, 466, 621, 974, 1179
Hpy188I TCNGA 3 cut(s) 255, 658, 1048
Hpy8I GTNNAC 5 cut(s) 132, 466, 621, 974, 1179
HpyAV CCTTC 8 cut(s) 241, 302, 489, 560, 562, 752, 1084, 1130
HpyCH4III ACNGT 3 cut(s) 145, 793, 1166
HpyCH4IV ACGT 1 cut(s) 976
HpyCH4V TGCA 8 cut(s) 158, 277, 377, 458, 642, 857, 932, 1013
HpyF10VI GCNNNNNNNGC 3 cut(s) 450, 455, 938
HpyF3I CTNAG 5 cut(s) 539, 657, 895, 925, 1120
HpySE526I ACGT 1 cut(s) 976
Hsp92II CATG 4 cut(s) 73, 277, 1043, 1211
KflI GGGWCCC 1 cut(s) 1239
KspAI GTTAAC 1 cut(s) 466
Kzo9I GATC 8 cut(s) 79, 160, 391, 502, 644, 686, 982, 1249
LmnI GCTCC 2 cut(s) 827, 1275
LweI GCATC 2 cut(s) 141, 1000
MaeI CTAG 2 cut(s) 332, 969
MaeII ACGT 1 cut(s) 976
MaeIII GTNAC 1 cut(s) 56
MalI GATC 8 cut(s) 81, 162, 393, 504, 646, 688, 984, 1251
MboI GATC 8 cut(s) 79, 160, 391, 502, 644, 686, 982, 1249
MboII GAAGA 5 cut(s) 74, 113, 226, 713, 739
MflI RGATCY 1 cut(s) 391
MhlI GDGCHC 3 cut(s) 1131, 1188, 1272
MlsI TGGCCA 1 cut(s) 1100
MluCI AATT 5 cut(s) 164, 220, 480, 767, 1060
MluNI TGGCCA 1 cut(s) 1100
MlyI GAGTC 3 cut(s) 273, 394, 900
MmeI TCCRAC 1 cut(s) 880
Mox20I TGGCCA 1 cut(s) 1100
MscI TGGCCA 1 cut(s) 1100
MseI TTAA 3 cut(s) 258, 323, 465
MslI CAYNNNNRTG 1 cut(s) 840
Msp20I TGGCCA 1 cut(s) 1100
MspI CCGG 2 cut(s) 212, 710
MspR9I CCNGG 2 cut(s) 212, 556
Mva1269I GAATGC 1 cut(s) 835
MvaI CCWGG 1 cut(s) 556
MvnI CGCG 1 cut(s) 1245
MwoI GCNNNNNNNGC 3 cut(s) 450, 455, 938
NciI CCSGG 1 cut(s) 212
NdeI CATATG 1 cut(s) 196
NdeII GATC 8 cut(s) 79, 160, 391, 502, 644, 686, 982, 1249
NlaIII CATG 4 cut(s) 73, 277, 1043, 1211
NlaIV GGNNCC 5 cut(s) 90, 867, 1187, 1240, 1241
NmuCI GTSAC 1 cut(s) 56
NspI RCATGY 1 cut(s) 277
PaqCI CACCTGC 1 cut(s) 842
PcsI WCGNNNNNNNCGW 1 cut(s) 1147
PctI GAATGC 1 cut(s) 835
PfeI GAWTC 6 cut(s) 24, 509, 910, 921, 1043, 1211
PflMI CCANNNNNTGG 1 cut(s) 831
PkrI GCNGC 2 cut(s) 1172, 1221
PleI GAGTC 3 cut(s) 272, 394, 899
PpsI GAGTC 3 cut(s) 272, 394, 899
PpuMI RGGWCCY 1 cut(s) 1239
PsiI TTATAA 1 cut(s) 219
Psp124BI GAGCTC 1 cut(s) 1272
Psp5II RGGWCCY 1 cut(s) 1239
Psp6I CCWGG 1 cut(s) 554
PspGI CCWGG 1 cut(s) 554
PspN4I GGNNCC 5 cut(s) 90, 867, 1187, 1240, 1241
PspPI GGNCC 6 cut(s) 89, 209, 328, 789, 866, 1239
PspPPI RGGWCCY 1 cut(s) 1239
PsrI GAACNNNNNNTAC 2 cut(s) 1099, 1131
PstNI CAGNNNCTG 1 cut(s) 446
PsuI RGATCY 1 cut(s) 391
RsaI GTAC 4 cut(s) 175, 272, 795, 803
RsaNI GTAC 4 cut(s) 174, 271, 794, 802
RseI CAYNNNNRTG 1 cut(s) 840
SacI GAGCTC 1 cut(s) 1272
SaqAI TTAA 3 cut(s) 258, 323, 465
SatI GCNGC 2 cut(s) 1171, 1220
Sau3AI GATC 8 cut(s) 79, 160, 391, 502, 644, 686, 982, 1249
Sau96I GGNCC 6 cut(s) 89, 209, 328, 789, 866, 1239
ScaI AGTACT 1 cut(s) 175
SchI GAGTC 3 cut(s) 273, 394, 900
ScrFI CCNGG 2 cut(s) 212, 556
SduI GDGCHC 3 cut(s) 1131, 1188, 1272
SfaNI GCATC 2 cut(s) 141, 1000
SfcI CTRYAG 1 cut(s) 627
SinI GGWCC 4 cut(s) 89, 789, 866, 1239
SmiMI CAYNNNNRTG 1 cut(s) 840
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 5 cut(s) 164, 220, 480, 767, 1060
SsiI CCGC 6 cut(s) 451, 694, 863, 1171, 1219, 1243
SspMI CTAG 2 cut(s) 332, 969
SstI GAGCTC 1 cut(s) 1272
StyD4I CCNGG 2 cut(s) 210, 554
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 3 cut(s) 145, 793, 1166
TaiI ACGT 1 cut(s) 979
TaqI TCGA 6 cut(s) 267, 739, 754, 913, 947, 1266
TasI AATT 5 cut(s) 164, 220, 480, 767, 1060
TatI WGTACW 2 cut(s) 173, 270
TauI GCSGC 2 cut(s) 1173, 1222
TfiI GAWTC 6 cut(s) 24, 509, 910, 921, 1043, 1211
Tru1I TTAA 3 cut(s) 258, 323, 465
Tru9I TTAA 3 cut(s) 258, 323, 465
TscAI CASTG 4 cut(s) 451, 610, 847, 1138
TseFI GTSAC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 5 cut(s) 234, 284, 708, 1187, 1224
TspGWI ACGGA 1 cut(s) 1247
TspRI CASTG 4 cut(s) 451, 610, 847, 1138
Van91I CCANNNNNTGG 1 cut(s) 831
VpaK11BI GGWCC 4 cut(s) 89, 789, 866, 1239
XceI RCATGY 1 cut(s) 277
XmaJI CCTAGG 1 cut(s) 331
XmiI GTMKAC 1 cut(s) 1178
XspI CTAG 2 cut(s) 332, 969
ZrmI AGTACT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.