Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

58012993 .. 58016765

Gene Structure 3773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG387200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAGCTCTGGAGTGCTTTGTCTTTGCTTCTTCTTTCTGCATTCCAGCTTGTTTCGGCACAAACAACCACTTCTCCTGATGAAGTTACTGCTCTCCACAAGGTAGTAGAACACTGGAACTTGGTAAATCACTTGAATCTTACCATTGACCCCTGCACTGAAAATGCAACATGGGCATCTGGAACTGCGAATCCCCGTGTGGCTTGCGATTGTACAGGCAGCGCCTGCCATATTACTCACCTGAAGATATATGCCTTGGACATAATTGGTGATCTACCAGGAGAACTATTTGAGCTAAAGCAGCTAATAGACTTGAATCTTGGTCAGAATGTATTAAGCGGGCGCATTCCTCCTGAAATAGGACTGTTATCCAACATGCAGTATCTTAGCTTAGGCATAAACAATCTGTCAGGTCCAGTTCCATCAGAGCTTGGCAACTTGGCCAAGTTGGTTGAGCTAAGTTTTAGCTCAAACCAGTTCTCTGGACCATTGCCCTTGGACCTTGGAAAACTGACCTCCTTGCAGCAGTTGTACATAGACAGCAGTGGAGTAACTGGACCAATTCCACAGGAGCTTTCAAACTTAAAATCCCTTCAAACTTTCTGGGCATCTGATAATCTCTTCACCGGAAAACTCCCACAGTTCTTAGGGACTCTTACAGAACTCATAGACTTGCGACTTGAAGGCACGTTGCTTGATGGACCAATTCCAAGCAATTTTGGTGCTCTAACCAAACTAGACATCTTGAGAATTGGTGATCTTAGCAACAAAGATTCTTCTCTTGATTTTTTGGAAAATCTAACAAGTTTGTCCATGCTGTCTTTGAGAAGTTGTCGAGTATCTGGAGAAATTCCTGAACAAATTGGAAAGTTTTCCAAGTTGCAATACCTAGATTTGAGATTCAACAAGTTGACTGGCTCAATACCAAACTCATTCCAAGATGTTACTGTGCTGCAATTTCTTCTCGGATGCCGGGTCTTCTTCGAAAAGCGAGAGGAAGCGTGTGGGAAGGATTGTGGGAGTGTCATTTGGATGTGCAGCTGTTGTGATCATAATGTCATCAGTGTTCTACCTATGGTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA LRR_1 LRR_4 LRR_8 Malectin

Protein Analysis

361

Amino Acids

39.43

Weight (kDa)

4.77

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	73 - 181	5.3e-08	Leucine-rich repeat region
LRR_14	PF23598	167 - 273	5e-09	Leucine-rich repeat region
LRR_14	PF23598	249 - 323	2.3e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	849
AcuI	CTGAAG	1 cut(s)	263
AfaI	GTAC	2 cut(s)	214, 533
AfiI	CCNNNNNNNGG	1 cut(s)	359
AgsI	TTSAA	6 cut(s)	136, 316, 579, 596, 683, 904
AjnI	CCWGG	1 cut(s)	277
AloI	GAACNNNNNNTCC	2 cut(s)	175, 207
Alw21I	GWGCWC	2 cut(s)	9, 727
AlwNI	CAGNNNCTG	1 cut(s)	225
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	5 cut(s)	219, 301, 523, 952, 1038
ApoI	RAATTY	1 cut(s)	849
Asp700I	GAANNNNTTC	1 cut(s)	871
AspLEI	GCGC	2 cut(s)	224, 345
AspS9I	GGNCC	5 cut(s)	413, 485, 499, 557, 701
AsuC2I	CCSGG	1 cut(s)	974
AsuHPI	GGTGA	4 cut(s)	230, 281, 616, 767
AsuII	TTCGAA	1 cut(s)	984
AvaII	GGWCC	5 cut(s)	413, 485, 499, 557, 701
BalI	TGGCCA	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	970
Bbv12I	GWGCWC	2 cut(s)	9, 727
BbvI	GCAGC	5 cut(s)	231, 313, 535, 939, 1050
BccI	CCATC	2 cut(s)	430, 692
BciT130I	CCWGG	1 cut(s)	279
BclI	TGATCA	1 cut(s)	1048
BcnI	CCSGG	1 cut(s)	974
BfaI	CTAG	2 cut(s)	737, 890
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	5 cut(s)	220, 302, 524, 953, 1039
BlsI	GCNGC	5 cut(s)	221, 303, 525, 954, 1040
Bme1390I	CCNGG	2 cut(s)	279, 974
Bme18I	GGWCC	5 cut(s)	413, 485, 499, 557, 701
BmgT120I	GGNCC	5 cut(s)	413, 485, 499, 557, 701
BmrFI	CCNGG	2 cut(s)	279, 974
BmsI	GCATC	3 cut(s)	185, 617, 959
BpiI	GAAGAC	1 cut(s)	970
BpmI	CTGGAG	2 cut(s)	31, 864
Bpu10I	CCTNAGC	1 cut(s)	391
Bpu14I	TTCGAA	1 cut(s)	984
BpuEI	CTTGAG	1 cut(s)	766
BpuMI	CCSGG	1 cut(s)	974
BsaJI	CCNNGG	3 cut(s)	255, 495, 502
BsaWI	WCCGGW	1 cut(s)	626
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse1I	ACTGG	5 cut(s)	119, 416, 475, 559, 919
Bse3DI	GCAATG	1 cut(s)	488
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	3 cut(s)	255, 495, 502
BseGI	GGATG	2 cut(s)	974, 1038
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseMI	GCAATG	1 cut(s)	488
BseNI	ACTGG	5 cut(s)	119, 416, 475, 559, 919
BseXI	GCAGC	5 cut(s)	231, 313, 535, 939, 1050
BsgI	GTGCAG	2 cut(s)	139, 1057
BshFI	GGCC	1 cut(s)	443
BsiHKAI	GWGCWC	2 cut(s)	9, 727
BsiSI	CCGG	2 cut(s)	627, 973
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	664
BsmI	GAATGC	2 cut(s)	41, 345
BsnI	GGCC	1 cut(s)	443
Bsp119I	TTCGAA	1 cut(s)	984
Bsp1286I	GDGCHC	2 cut(s)	9, 727
Bsp1407I	TGTACA	2 cut(s)	212, 531
Bsp143I	GATC	3 cut(s)	271, 757, 1048
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	443
BspT104I	TTCGAA	1 cut(s)	984
BsrDI	GCAATG	1 cut(s)	488
BsrGI	TGTACA	2 cut(s)	212, 531
BsrI	ACTGG	5 cut(s)	119, 416, 475, 559, 919
BssECI	CCNNGG	3 cut(s)	255, 495, 502
BssMI	GATC	3 cut(s)	271, 757, 1048
BssT1I	CCWWGG	3 cut(s)	255, 495, 502
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	3 cut(s)	366, 642, 949
Bst6I	CTCTTC	1 cut(s)	626
BstAPI	GCANNNNNTGC	1 cut(s)	225
BstAUI	TGTACA	2 cut(s)	212, 531
BstBI	TTCGAA	1 cut(s)	984
BstC8I	GCNNGC	3 cut(s)	205, 226, 341
BstDEI	CTNAG	5 cut(s)	386, 391, 458, 646, 761
BstENI	CCTNNNNNAGG	1 cut(s)	357
BstF5I	GGATG	2 cut(s)	974, 1038
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	2 cut(s)	224, 345
BstKTI	GATC	3 cut(s)	274, 760, 1051
BstMBI	GATC	3 cut(s)	271, 757, 1048
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 225, 301
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	277, 972
BstV1I	GCAGC	5 cut(s)	231, 313, 535, 939, 1050
BstV2I	GAAGAC	1 cut(s)	970
BstXI	CCANNNNNNTGG	1 cut(s)	482
BsuRI	GGCC	1 cut(s)	443
BtsCI	GGATG	2 cut(s)	974, 1038
BtsI	GCAGTG	1 cut(s)	550
BtsIMutI	CAGTG	4 cut(s)	112, 156, 550, 1069
Cac8I	GCNNGC	3 cut(s)	205, 226, 341
CaiI	CAGNNNCTG	1 cut(s)	225
CfoI	GCGC	2 cut(s)	224, 345
Cfr13I	GGNCC	5 cut(s)	413, 485, 499, 557, 701
Csp6I	GTAC	2 cut(s)	213, 532
CviAII	CATG	3 cut(s)	171, 376, 814
CviQI	GTAC	2 cut(s)	213, 532
DdeI	CTNAG	5 cut(s)	386, 391, 458, 646, 761
DpnI	GATC	3 cut(s)	273, 759, 1050
DpnII	GATC	3 cut(s)	271, 757, 1048
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	626
EarI	CTCTTC	1 cut(s)	626
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	3 cut(s)	255, 495, 502
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	5 cut(s)	413, 485, 499, 557, 701
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	7
EcoNI	CCTNNNNNAGG	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	3 cut(s)	255, 495, 502
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	3 cut(s)	255, 495, 502
FaeI	CATG	3 cut(s)	174, 379, 817
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	3 cut(s)	170, 375, 813
FauI	CCCGC	1 cut(s)	332
FbaI	TGATCA	1 cut(s)	1048
Fnu4HI	GCNGC	5 cut(s)	220, 302, 524, 953, 1039
FokI	GGATG	2 cut(s)	981, 1045
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	5 cut(s)	220, 302, 524, 953, 1039
FspBI	CTAG	2 cut(s)	737, 890
GlaI	GCGC	2 cut(s)	223, 344
GluI	GCNGC	5 cut(s)	220, 302, 524, 953, 1039
GsuI	CTGGAG	2 cut(s)	31, 864
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	2 cut(s)	627, 973
HhaI	GCGC	2 cut(s)	224, 345
Hin1II	CATG	3 cut(s)	174, 379, 817
Hin6I	GCGC	2 cut(s)	222, 343
HinP1I	GCGC	2 cut(s)	222, 343
HincII	GTYRAC	1 cut(s)	912
HindII	GTYRAC	1 cut(s)	912
HinfI	GANTC	6 cut(s)	136, 190, 316, 652, 773, 900
HpaII	CCGG	2 cut(s)	627, 973
HphI	GGTGA	4 cut(s)	230, 281, 616, 767
Hpy166II	GTNNAC	1 cut(s)	912
Hpy188I	TCNGA	4 cut(s)	327, 427, 613, 968
Hpy188III	TCNNGA	9 cut(s)	10, 77, 180, 353, 483, 745, 782, 843, 854
Hpy8I	GTNNAC	1 cut(s)	912
HpyAV	CCTTC	3 cut(s)	602, 677, 1003
HpyCH4III	ACNGT	3 cut(s)	366, 642, 949
HpyCH4IV	ACGT	1 cut(s)	689
HpyCH4V	TGCA	8 cut(s)	41, 156, 167, 379, 523, 883, 955, 1038
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 225, 301
HpyF3I	CTNAG	5 cut(s)	386, 391, 458, 646, 761
HpySE526I	ACGT	1 cut(s)	689
Hsp92II	CATG	3 cut(s)	174, 379, 817
HspAI	GCGC	2 cut(s)	222, 343
Ksp22I	TGATCA	1 cut(s)	1048
Kzo9I	GATC	3 cut(s)	271, 757, 1048
LmnI	GCTCC	2 cut(s)	4, 571
Lsp1109I	GCAGC	5 cut(s)	231, 313, 535, 939, 1050
LweI	GCATC	3 cut(s)	185, 617, 959
MaeI	CTAG	2 cut(s)	737, 890
MaeII	ACGT	1 cut(s)	689
MaeIII	GTNAC	3 cut(s)	85, 550, 943
MalI	GATC	3 cut(s)	273, 759, 1050
MboI	GATC	3 cut(s)	271, 757, 1048
MboII	GAAGA	7 cut(s)	23, 256, 613, 768, 953, 970, 973
MhlI	GDGCHC	2 cut(s)	9, 727
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	8 cut(s)	264, 561, 705, 715, 750, 849, 861, 956
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	1 cut(s)	646
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	3 cut(s)	360, 526, 988
Mox20I	TGGCCA	1 cut(s)	443
MroXI	GAANNNNTTC	1 cut(s)	871
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	3 cut(s)	335, 584, 1084
MslI	CAYNNNNRTG	1 cut(s)	1031
Msp20I	TGGCCA	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	1041
MspI	CCGG	2 cut(s)	627, 973
MspR9I	CCNGG	2 cut(s)	279, 974
Mva1269I	GAATGC	2 cut(s)	41, 345
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	3 cut(s)	173, 225, 301
NciI	CCSGG	1 cut(s)	974
NdeII	GATC	3 cut(s)	271, 757, 1048
NlaIII	CATG	3 cut(s)	174, 379, 817
NspI	RCATGY	1 cut(s)	379
NspV	TTCGAA	1 cut(s)	984
PctI	GAATGC	2 cut(s)	41, 345
PdmI	GAANNNNTTC	1 cut(s)	871
PfeI	GAWTC	5 cut(s)	136, 190, 316, 773, 900
PkrI	GCNGC	5 cut(s)	221, 303, 525, 954, 1040
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspPI	GGNCC	5 cut(s)	413, 485, 499, 557, 701
PstNI	CAGNNNCTG	1 cut(s)	225
PvuII	CAGCTG	1 cut(s)	1041
RsaI	GTAC	2 cut(s)	214, 533
RsaNI	GTAC	2 cut(s)	213, 532
RseI	CAYNNNNRTG	1 cut(s)	1031
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	335, 584, 1084
SatI	GCNGC	5 cut(s)	220, 302, 524, 953, 1039
Sau3AI	GATC	3 cut(s)	271, 757, 1048
Sau96I	GGNCC	5 cut(s)	413, 485, 499, 557, 701
SchI	GAGTC	1 cut(s)	646
ScrFI	CCNGG	2 cut(s)	279, 974
SduI	GDGCHC	2 cut(s)	9, 727
SfaNI	GCATC	3 cut(s)	185, 617, 959
SfuI	TTCGAA	1 cut(s)	984
SinI	GGWCC	5 cut(s)	413, 485, 499, 557, 701
SmiMI	CAYNNNNRTG	1 cut(s)	1031
SmlI	CTYRAG	1 cut(s)	745
SmoI	CTYRAG	1 cut(s)	745
Sse9I	AATT	8 cut(s)	264, 561, 705, 715, 750, 849, 861, 956
SsiI	CCGC	1 cut(s)	339
SspMI	CTAG	2 cut(s)	737, 890
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	277, 972
StyI	CCWWGG	3 cut(s)	255, 495, 502
TaaI	ACNGT	3 cut(s)	366, 642, 949
TaiI	ACGT	1 cut(s)	692
TaqI	TCGA	2 cut(s)	835, 984
TasI	AATT	8 cut(s)	264, 561, 705, 715, 750, 849, 861, 956
TatI	WGTACW	2 cut(s)	212, 531
TfiI	GAWTC	5 cut(s)	136, 190, 316, 773, 900
Tru1I	TTAA	3 cut(s)	335, 584, 1084
Tru9I	TTAA	3 cut(s)	335, 584, 1084
TscAI	CASTG	4 cut(s)	119, 163, 550, 1069
TseI	GCWGC	5 cut(s)	219, 301, 523, 952, 1038
TspDTI	ATGAA	1 cut(s)	96
TspRI	CASTG	4 cut(s)	119, 163, 550, 1069
VpaK11BI	GGWCC	5 cut(s)	413, 485, 499, 557, 701
XagI	CCTNNNNNAGG	1 cut(s)	357
XapI	RAATTY	1 cut(s)	849
XceI	RCATGY	1 cut(s)	379
XmnI	GAANNNNTTC	1 cut(s)	871
XspI	CTAG	2 cut(s)	737, 890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.