Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

60243469 .. 60244020

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG420000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGACCGAGTATGTTGTCACTCGTTGGTATAGGGCTCCAGAGCTCCTCCTGTGCTGCGATAACTATGGAACTTCCATTGATGTATGGTCTGTTGGATGCATCTTTGCTGAGCTTCTTGGCCGTAAGCCTATCTTCCCTGGGACAGAATGTCTCAACCAACTTAAACTTATAATTAACATCCTTGGCAGCCAGAGGGAGGAGGATATTGAATTTATAGACAATCCAAAGGCGAAGAAGTACATCAAGTCATTGCCATATTCTCCTGGGACGCCCTTCTCCTGTCTTTACCCTGATGCCCATCCTTTGGCCATTGATCTACTACAGAAGATGCTTGTTTTTGACCCATCAAAGAGGATCGGTGTCACTGAAGCACTCCAACACCCTTACATGTCCCAATTGTATGATCCCAATGGTAACCCTCCCGCAGAGGTACCAATTGATCTTGACATAGATGAGGACTTGGGAGAAGAGATGATAAGGGAGATGATGTGGAGGGAAATGCTTCAATATCATCCTGAAGCTGTTACAAGCAATGGTCAAGTGTATTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

183

Amino Acids

20.93

Weight (kDa)

4.59

Isoelectric Point (pI)

54.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 130	3.2e-22	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
Acc65I	GGTACC	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	430
AccB7I	CCANNNNNTGG	1 cut(s)	304
AciI	CCGC	1 cut(s)	423
AclWI	GGATC	2 cut(s)	362, 398
AcoI	YGGCCR	2 cut(s)	118, 306
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	2 cut(s)	387, 537
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	2 cut(s)	239, 432
AfiI	CCNNNNNNNGG	2 cut(s)	196, 304
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	2 cut(s)	209, 506
AhdI	GACNNNNNGTC	1 cut(s)	147
AjnI	CCWGG	2 cut(s)	136, 262
AluBI	AGCT	3 cut(s)	43, 112, 521
AluI	AGCT	3 cut(s)	43, 112, 521
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	2 cut(s)	362, 398
AoxI	GGCC	2 cut(s)	118, 306
ApeKI	GCWGC	2 cut(s)	54, 186
ApoI	RAATTY	1 cut(s)	209
Asp700I	GAANNNNTTC	1 cut(s)	501
Asp718I	GGTACC	1 cut(s)	430
BalI	TGGCCA	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	430
BanII	GRGCYC	2 cut(s)	37, 45
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	41, 198
BccI	CCATC	2 cut(s)	306, 352
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	2 cut(s)	138, 264
BcoDI	GTCTC	1 cut(s)	155
BfmI	CTRYAG	1 cut(s)	320
BisI	GCNGC	2 cut(s)	55, 187
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	2 cut(s)	56, 188
Bme1390I	CCNGG	2 cut(s)	138, 264
BmeRI	GACNNNNNGTC	1 cut(s)	147
BmiI	GGNNCC	2 cut(s)	36, 432
BmrFI	CCNGG	2 cut(s)	138, 264
BmsI	GCATC	4 cut(s)	86, 108, 283, 318
BpmI	CTGGAG	1 cut(s)	21
Bpu1102I	GCTNAGC	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	269
BsaJI	CCNNGG	4 cut(s)	136, 137, 181, 263
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 304
Bse3DI	GCAATG	2 cut(s)	248, 538
Bse8I	GATNNNNATC	1 cut(s)	297
BseBI	CCWGG	2 cut(s)	138, 264
BseDI	CCNNGG	4 cut(s)	136, 137, 181, 263
BseGI	GGATG	4 cut(s)	101, 177, 298, 511
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	2 cut(s)	196, 304
BseMI	GCAATG	2 cut(s)	248, 538
BseMII	CTCAG	1 cut(s)	99
BseRI	GAGGAG	2 cut(s)	35, 212
BseXI	GCAGC	2 cut(s)	41, 198
BshFI	GGCC	2 cut(s)	120, 308
BshNI	GGYRCC	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	45
BslFI	GGGAC	3 cut(s)	154, 280, 376
BslI	CCNNNNNNNGG	2 cut(s)	196, 304
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	3 cut(s)	154, 280, 376
BsnI	GGCC	2 cut(s)	120, 308
Bsp1286I	GDGCHC	2 cut(s)	37, 45
Bsp143I	GATC	4 cut(s)	313, 354, 403, 439
Bsp1720I	GCTNAGC	1 cut(s)	108
BspACI	CCGC	1 cut(s)	423
BspANI	GGCC	2 cut(s)	120, 308
BspCNI	CTCAG	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	36, 432
BspPI	GGATC	2 cut(s)	362, 398
BspT107I	GGYRCC	1 cut(s)	430
BsrDI	GCAATG	2 cut(s)	248, 538
BssECI	CCNNGG	4 cut(s)	136, 137, 181, 263
BssMI	GATC	4 cut(s)	313, 354, 403, 439
BssNI	GRCGYC	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	181
Bst2UI	CCWGG	2 cut(s)	138, 264
Bst6I	CTCTTC	1 cut(s)	462
BstACI	GRCGYC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	108
BstEII	GGTNACC	1 cut(s)	413
BstF5I	GGATG	4 cut(s)	101, 177, 298, 511
BstKTI	GATC	4 cut(s)	316, 357, 406, 442
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	4 cut(s)	313, 354, 403, 439
BstNI	CCWGG	2 cut(s)	138, 264
BstNSI	RCATGY	1 cut(s)	391
BstPI	GGTNACC	1 cut(s)	413
BstSCI	CCNGG	2 cut(s)	136, 262
BstSFI	CTRYAG	1 cut(s)	320
BstV1I	GCAGC	2 cut(s)	41, 198
BsuRI	GGCC	2 cut(s)	120, 308
BtsCI	GGATG	4 cut(s)	101, 177, 298, 511
BtsIMutI	CAGTG	1 cut(s)	363
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	238, 431
CviAII	CATG	1 cut(s)	388
CviJI	RGCY	8 cut(s)	35, 43, 112, 120, 127, 189, 308, 521
CviKI_1	RGCY	8 cut(s)	35, 43, 112, 120, 127, 189, 308, 521
CviQI	GTAC	2 cut(s)	238, 431
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	4 cut(s)	315, 356, 405, 441
DpnII	GATC	4 cut(s)	313, 354, 403, 439
DriI	GACNNNNNGTC	1 cut(s)	147
EaeI	YGGCCR	2 cut(s)	118, 306
Eam1104I	CTCTTC	1 cut(s)	462
Eam1105I	GACNNNNNGTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	462
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	181
Eco24I	GRGCYC	2 cut(s)	37, 45
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	2 cut(s)	387, 537
Eco91I	GGTNACC	1 cut(s)	413
EcoICRI	GAGCTC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	413
EcoRII	CCWGG	2 cut(s)	136, 262
EcoT14I	CCWWGG	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	101
EcoT38I	GRGCYC	2 cut(s)	37, 45
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	1 cut(s)	391
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	3 cut(s)	154, 280, 376
FatI	CATG	1 cut(s)	387
FauI	CCCGC	1 cut(s)	430
Fnu4HI	GCNGC	2 cut(s)	55, 187
FokI	GGATG	4 cut(s)	108, 164, 285, 498
FriOI	GRGCYC	2 cut(s)	37, 45
Fsp4HI	GCNGC	2 cut(s)	55, 187
GluI	GCNGC	2 cut(s)	55, 187
GsuI	CTGGAG	1 cut(s)	21
HaeIII	GGCC	2 cut(s)	120, 308
HgaI	GACGC	1 cut(s)	277
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	391
Hpy188III	TCNNGA	3 cut(s)	38, 443, 515
HpyAV	CCTTC	1 cut(s)	283
HpyCH4V	TGCA	1 cut(s)	99
HpyF3I	CTNAG	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	1 cut(s)	391
KpnI	GGTACC	1 cut(s)	434
Kzo9I	GATC	4 cut(s)	313, 354, 403, 439
LmnI	GCTCC	2 cut(s)	40, 48
Lsp1109I	GCAGC	2 cut(s)	41, 198
LweI	GCATC	4 cut(s)	86, 108, 283, 318
MaeIII	GTNAC	4 cut(s)	16, 361, 413, 523
MalI	GATC	4 cut(s)	315, 356, 405, 441
MboI	GATC	4 cut(s)	313, 354, 403, 439
MboII	GAAGA	4 cut(s)	124, 244, 337, 479
MfeI	CAATTG	2 cut(s)	395, 435
MhlI	GDGCHC	2 cut(s)	37, 45
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	4 cut(s)	171, 209, 395, 435
MluNI	TGGCCA	1 cut(s)	308
MmeI	TCCRAC	2 cut(s)	73, 400
MnlI	CCTC	9 cut(s)	56, 186, 190, 193, 345, 421, 429, 448, 486
Mox20I	TGGCCA	1 cut(s)	308
Mph1103I	ATGCAT	1 cut(s)	101
MroXI	GAANNNNTTC	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	2 cut(s)	162, 174
Msp20I	TGGCCA	1 cut(s)	308
MspR9I	CCNGG	2 cut(s)	138, 264
MunI	CAATTG	2 cut(s)	395, 435
MvaI	CCWGG	2 cut(s)	138, 264
NdeII	GATC	4 cut(s)	313, 354, 403, 439
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	2 cut(s)	36, 432
NmuCI	GTSAC	2 cut(s)	16, 361
NsiI	ATGCAT	1 cut(s)	101
NspI	RCATGY	1 cut(s)	391
PasI	CCCWGGG	1 cut(s)	137
PciI	ACATGT	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	501
PflMI	CCANNNNNTGG	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	56, 188
PscI	ACATGT	1 cut(s)	387
PsiI	TTATAA	1 cut(s)	170
Psp124BI	GAGCTC	1 cut(s)	45
Psp6I	CCWGG	2 cut(s)	136, 262
PspEI	GGTNACC	1 cut(s)	413
PspGI	CCWGG	2 cut(s)	136, 262
PspN4I	GGNNCC	2 cut(s)	36, 432
RsaI	GTAC	2 cut(s)	239, 432
RsaNI	GTAC	2 cut(s)	238, 431
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	162, 174
SatI	GCNGC	2 cut(s)	55, 187
Sau3AI	GATC	4 cut(s)	313, 354, 403, 439
ScrFI	CCNGG	2 cut(s)	138, 264
SduI	GDGCHC	2 cut(s)	37, 45
SetI	ASST	4 cut(s)	45, 114, 432, 523
SfaNI	GCATC	4 cut(s)	86, 108, 283, 318
SfcI	CTRYAG	1 cut(s)	320
Sse9I	AATT	4 cut(s)	171, 209, 395, 435
SsiI	CCGC	1 cut(s)	423
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	136, 262
StyI	CCWWGG	1 cut(s)	181
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	4 cut(s)	171, 209, 395, 435
TatI	WGTACW	1 cut(s)	237
Tru1I	TTAA	2 cut(s)	162, 174
Tru9I	TTAA	2 cut(s)	162, 174
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	2 cut(s)	16, 361
TseI	GCWGC	2 cut(s)	54, 186
Tsp45I	GTSAC	2 cut(s)	16, 361
TspRI	CASTG	1 cut(s)	370
Van91I	CCANNNNNTGG	1 cut(s)	304
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	501
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.