Rh6DG452000

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
N/A
Physical Location & Seq
Reverse (-)
62399106 .. 62401141
2036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG452000.1

Sequence Viewer

Length: 1302 bp
ATGAGTTACCTTTTTGATGAAGCAGGAAACAAAGGCTTGTGTGGACCGCCTCTTGGCAAGTGCAAGTCCCCAAAGAAGCGACTCCTCCTAATCATAGCCACCATAGTCATCTCAGTGGCTTTACTATTGTGTGTCTTCTGGATAATCACCTTAATCCGGCGCAGTCGAGCTCGTCGGACCCGTCAAGCCCAATCGGCCCAACAGGAAAAAGCCCAAATGAAGCCGGTAGCCCGTAAAACTCGCGGAGTATTGGAGGCCCAATTACCCGACCTACCGGTGGAAGACGATGAGTACAAAAAGGCAGAAAAAGGAGGGGAGTTGCATTTTGTGAGAAAGGACAGAGAGAGGTTTGAGGTGCAAGAGCTACTTAGGGCACCAGCTGAGGTTTTGGGGAGTGGGAGCTTTGGGTCGTCTTACAAGGCTGGTCTTATGAGTGGGTCTATGGTTGTGAAGAGGTTTAGGGATATGAACAGAGTTGGGAGAGATGATTTCTATGATCACATGAGTAGGATTGGAAGGTTGTCACACCCTAATCTGCTCCCACTCGTTGCATTCTATTACATGAAAGAAGAGAAGCTCTTGGTTCATGACTTTGCTCTAAACGGAAGCTTGGCTAGTCATCTCCATGCCAAGCGAGCCCCGGGACAGCCAGGACTCGACTGGCCAACCCGCTTGATGATCATAAAAGGAGTAGCAAGAGGCCTAGGCTACCTCTACAAAGAGTTCCCAGGCCTGCCTGTCCCCCACGGCCACCTGAAGTCCTCCAACGTCCTCCTCGATCACAGCCTCAACCCGGTCCTAGGCGAATACGCCCTAATCCCTGTCATCAACAAAGACCACGCCCACAAGTTCATGGTCGCCTACAAATCCCCCGAGTACTCCCAAACCGGACGTACCTCCAAGAAGACCGACGTGTGGAGCCTCGGCATCCTCATCTTCGAAATGCTGACCGGAAAGTTCCCCGCAAACTACCTCCAACAGGGCAAGAGGGCCAACGCCGACCTCGCCAGCTGGGTCAACTCGGTGGTCAGGGAGGAGTGGACCGGCGAGGTTTTCGATAAAGACATGAAGGGTACCAAGAATGGAGAAGGCGAGATGCTGAAGCTGTTGAAGATAGGGATGTGCTGCTGTGAGAGTAGTGTTGAAGGGAGGTGGGATTGGAGAGAGGCGGTGGATAAGATCGAGGAGTTGAAGGAGAGGGACAGTGAGGATGAAGACTACTCGTCGTATGCGAGTGATGGGGATGTGTACTCGTCTAGGGCTGTGACTGATGATGACTTCTCCTTCTCGGTTGCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

433

Amino Acids

48.75

Weight (kDa)

8.78

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 128 - 326 2.8e-24 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 128 - 390 9e-23 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1073
AccB1I GGYRCC 2 cut(s) 373, 1073
AccII CGCG 1 cut(s) 243
AciI CCGC 5 cut(s) 47, 243, 670, 963, 1169
AcoI YGGCCR 2 cut(s) 662, 748
AcuI CTGAAG 2 cut(s) 776, 1121
AfaI GTAC 5 cut(s) 293, 878, 895, 1075, 1250
AfiI CCNNNNNNNGG 7 cut(s) 53, 156, 277, 793, 800, 915, 979
AflIII ACRYGT 1 cut(s) 912
AgeI ACCGGT 1 cut(s) 274
AgsI TTSAA 3 cut(s) 1111, 1145, 1192
AhdI GACNNNNNGTC 1 cut(s) 1222
AjiI CACGTC 1 cut(s) 913
AjnI CCWGG 2 cut(s) 649, 727
AluBI AGCT 9 cut(s) 170, 364, 380, 402, 577, 609, 1011, 1105, 1298
AluI AGCT 9 cut(s) 170, 364, 380, 402, 577, 609, 1011, 1105, 1298
Alw21I GWGCWC 1 cut(s) 172
Ama87I CYCGRG 2 cut(s) 640, 872
AoxI GGCC 7 cut(s) 195, 255, 662, 700, 730, 748, 990
ApeKI GCWGC 2 cut(s) 1125, 1295
AsiGI ACCGGT 1 cut(s) 274
Asp718I GGTACC 1 cut(s) 1073
AspA2I CCTAGG 2 cut(s) 703, 799
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 7 cut(s) 44, 177, 196, 256, 796, 990, 1041
AsuC2I CCSGG 3 cut(s) 641, 642, 794
AsuHPI GGTGA 1 cut(s) 139
AsuII TTCGAA 1 cut(s) 939
AvaI CYCGRG 2 cut(s) 640, 872
AvaII GGWCC 4 cut(s) 44, 177, 796, 1041
AvrII CCTAGG 2 cut(s) 703, 799
BaeGI GKGCMC 1 cut(s) 376
BalI TGGCCA 1 cut(s) 664
BanI GGYRCC 2 cut(s) 373, 1073
BanII GRGCYC 2 cut(s) 172, 640
BbsI GAAGAC 4 cut(s) 127, 288, 911, 1221
Bbv12I GWGCWC 1 cut(s) 172
BbvCI CCTCAGC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 1112
BccI CCATC 1 cut(s) 1232
BceAI ACGGC 1 cut(s) 763
BciT130I CCWGG 2 cut(s) 651, 729
BclI TGATCA 2 cut(s) 496, 678
BcnI CCSGG 3 cut(s) 641, 642, 794
BfaI CTAG 4 cut(s) 615, 704, 800, 1257
BglI GCCNNNNNGGC 1 cut(s) 194
BisI GCNGC 2 cut(s) 1126, 1296
BlnI CCTAGG 2 cut(s) 703, 799
BlsI GCNGC 2 cut(s) 1127, 1297
BmcAI AGTACT 1 cut(s) 878
Bme1390I CCNGG 5 cut(s) 641, 642, 651, 729, 794
Bme18I GGWCC 4 cut(s) 44, 177, 796, 1041
BmeRI GACNNNNNGTC 1 cut(s) 1222
BmeT110I CYCGRG 2 cut(s) 640, 872
BmgBI CACGTC 1 cut(s) 913
BmgT120I GGNCC 7 cut(s) 44, 177, 196, 256, 796, 990, 1041
BmiI GGNNCC 4 cut(s) 179, 375, 920, 1075
BmrFI CCNGG 5 cut(s) 641, 642, 651, 729, 794
BmsI GCATC 2 cut(s) 936, 1086
BpiI GAAGAC 4 cut(s) 127, 288, 911, 1221
Bpu10I CCTNAGC 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 939
BpuMI CCSGG 3 cut(s) 641, 642, 794
BsaJI CCNNGG 7 cut(s) 639, 640, 703, 727, 745, 799, 922
BsaWI WCCGGW 3 cut(s) 274, 887, 950
Bsc4I CCNNNNNNNGG 7 cut(s) 53, 156, 277, 793, 800, 915, 979
Bse118I RCCGGY 3 cut(s) 223, 274, 1043
Bse1I ACTGG 1 cut(s) 665
BseBI CCWGG 2 cut(s) 651, 729
BseDI CCNNGG 7 cut(s) 639, 640, 703, 727, 745, 799, 922
BseGI GGATG 4 cut(s) 927, 1125, 1216, 1249
BseLI CCNNNNNNNGG 7 cut(s) 53, 156, 277, 793, 800, 915, 979
BseMII CTCAG 2 cut(s) 126, 372
BseNI ACTGG 1 cut(s) 665
BseRI GAGGAG 4 cut(s) 74, 764, 1049, 1199
BseSI GKGCMC 1 cut(s) 376
BseXI GCAGC 1 cut(s) 1112
BseYI CCCAGC 1 cut(s) 1011
Bsh1236I CGCG 1 cut(s) 243
BshFI GGCC 7 cut(s) 197, 257, 664, 702, 732, 750, 992
BshNI GGYRCC 2 cut(s) 373, 1073
BshTI ACCGGT 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 172
BsiHKCI CYCGRG 2 cut(s) 640, 872
BsiSI CCGG 8 cut(s) 157, 224, 275, 641, 794, 888, 951, 1044
BslFI GGGAC 4 cut(s) 52, 657, 725, 1214
BslI CCNNNNNNNGG 7 cut(s) 53, 156, 277, 793, 800, 915, 979
BsmFI GGGAC 4 cut(s) 52, 657, 725, 1214
BsmI GAATGC 1 cut(s) 551
BsnI GGCC 7 cut(s) 197, 257, 664, 702, 732, 750, 992
BsoBI CYCGRG 2 cut(s) 640, 872
Bsp119I TTCGAA 1 cut(s) 939
Bsp1286I GDGCHC 3 cut(s) 172, 376, 640
Bsp143I GATC 4 cut(s) 496, 678, 778, 1179
BspACI CCGC 5 cut(s) 47, 243, 670, 963, 1169
BspANI GGCC 7 cut(s) 197, 257, 664, 702, 732, 750, 992
BspCNI CTCAG 2 cut(s) 125, 373
BspFNI CGCG 1 cut(s) 243
BspHI TCATGA 1 cut(s) 586
BspLI GGNNCC 4 cut(s) 179, 375, 920, 1075
BspT104I TTCGAA 1 cut(s) 939
BspT107I GGYRCC 2 cut(s) 373, 1073
BsrFI RCCGGY 3 cut(s) 223, 274, 1043
BsrI ACTGG 1 cut(s) 665
BssAI RCCGGY 3 cut(s) 223, 274, 1043
BssECI CCNNGG 7 cut(s) 639, 640, 703, 727, 745, 799, 922
BssMI GATC 4 cut(s) 496, 678, 778, 1179
BssT1I CCWWGG 2 cut(s) 703, 799
Bst2UI CCWGG 2 cut(s) 651, 729
Bst4CI ACNGT 1 cut(s) 1205
Bst6I CTCTTC 2 cut(s) 446, 564
BstBI TTCGAA 1 cut(s) 939
BstC8I GCNNGC 3 cut(s) 636, 734, 1009
BstDEI CTNAG 3 cut(s) 112, 368, 381
BstDSI CCRYGG 1 cut(s) 745
BstENI CCTNNNNNAGG 1 cut(s) 977
BstF5I GGATG 4 cut(s) 927, 1125, 1216, 1249
BstFNI CGCG 1 cut(s) 243
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 4 cut(s) 499, 681, 781, 1182
BstMBI GATC 4 cut(s) 496, 678, 778, 1179
BstMWI GCNNNNNNNGC 3 cut(s) 194, 635, 1004
BstNI CCWGG 2 cut(s) 651, 729
BstSCI CCNGG 5 cut(s) 639, 640, 649, 727, 792
BstSLI GKGCMC 1 cut(s) 376
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 1112
BstV2I GAAGAC 4 cut(s) 127, 288, 911, 1221
BsuRI GGCC 7 cut(s) 197, 257, 664, 702, 732, 750, 992
BtgI CCRYGG 1 cut(s) 745
BtrI CACGTC 1 cut(s) 913
BtsCI GGATG 4 cut(s) 927, 1125, 1216, 1249
BtsIMutI CAGTG 2 cut(s) 120, 1210
Cac8I GCNNGC 3 cut(s) 636, 734, 1009
CciI TCATGA 1 cut(s) 586
CfoI GCGC 1 cut(s) 162
Cfr10I RCCGGY 3 cut(s) 223, 274, 1043
Cfr13I GGNCC 7 cut(s) 44, 177, 196, 256, 796, 990, 1041
Cfr9I CCCGGG 1 cut(s) 640
Csp6I GTAC 5 cut(s) 292, 877, 894, 1074, 1249
CspAI ACCGGT 1 cut(s) 274
CviAII CATG 6 cut(s) 502, 562, 587, 626, 853, 1066
CviQI GTAC 5 cut(s) 292, 877, 894, 1074, 1249
DdeI CTNAG 3 cut(s) 112, 368, 381
DpnI GATC 4 cut(s) 498, 680, 780, 1181
DpnII GATC 4 cut(s) 496, 678, 778, 1179
DriI GACNNNNNGTC 1 cut(s) 1222
EaeI YGGCCR 2 cut(s) 662, 748
Eam1104I CTCTTC 2 cut(s) 446, 564
Eam1105I GACNNNNNGTC 1 cut(s) 1222
EarI CTCTTC 2 cut(s) 446, 564
Ecl136II GAGCTC 1 cut(s) 170
Eco130I CCWWGG 2 cut(s) 703, 799
Eco147I AGGCCT 2 cut(s) 702, 732
Eco24I GRGCYC 2 cut(s) 172, 640
Eco47I GGWCC 4 cut(s) 44, 177, 796, 1041
Eco53kI GAGCTC 1 cut(s) 170
Eco57I CTGAAG 2 cut(s) 776, 1121
Eco88I CYCGRG 2 cut(s) 640, 872
EcoICRI GAGCTC 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 977
EcoRII CCWGG 2 cut(s) 649, 727
EcoT14I CCWWGG 2 cut(s) 703, 799
EcoT38I GRGCYC 2 cut(s) 172, 640
ErhI CCWWGG 2 cut(s) 703, 799
FaeI CATG 6 cut(s) 505, 565, 590, 629, 856, 1069
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FaqI GGGAC 4 cut(s) 52, 657, 725, 1214
FatI CATG 6 cut(s) 501, 561, 586, 625, 852, 1065
FauI CCCGC 2 cut(s) 677, 970
FbaI TGATCA 2 cut(s) 496, 678
Fnu4HI GCNGC 2 cut(s) 1126, 1296
FokI GGATG 4 cut(s) 914, 1132, 1223, 1256
FriOI GRGCYC 2 cut(s) 172, 640
Fsp4HI GCNGC 2 cut(s) 1126, 1296
FspBI CTAG 4 cut(s) 615, 704, 800, 1257
GlaI GCGC 1 cut(s) 161
GluI GCNGC 2 cut(s) 1126, 1296
GsaI CCCAGC 1 cut(s) 1015
HaeIII GGCC 7 cut(s) 197, 257, 664, 702, 732, 750, 992
HapII CCGG 8 cut(s) 157, 224, 275, 641, 794, 888, 951, 1044
HhaI GCGC 1 cut(s) 162
Hin1II CATG 6 cut(s) 505, 565, 590, 629, 856, 1069
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 1 cut(s) 1018
HindII GTYRAC 1 cut(s) 1018
HindIII AAGCTT 1 cut(s) 607
HinfI GANTC 2 cut(s) 81, 654
HpaII CCGG 8 cut(s) 157, 224, 275, 641, 794, 888, 951, 1044
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 4 cut(s) 44, 1018, 1041, 1249
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 2 cut(s) 139, 587
Hpy8I GTNNAC 4 cut(s) 44, 1018, 1041, 1249
Hpy99I CGWCG 3 cut(s) 177, 914, 1228
HpyAV CCTTC 6 cut(s) 510, 1063, 1082, 1139, 1186, 1294
HpyCH4III ACNGT 1 cut(s) 1205
HpyCH4IV ACGT 3 cut(s) 768, 892, 912
HpyCH4V TGCA 5 cut(s) 63, 322, 358, 551, 1295
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 635, 1004
HpyF3I CTNAG 3 cut(s) 112, 368, 381
HpySE526I ACGT 3 cut(s) 768, 892, 912
Hsp92II CATG 6 cut(s) 505, 565, 590, 629, 856, 1069
HspAI GCGC 1 cut(s) 160
KpnI GGTACC 1 cut(s) 1077
Ksp22I TGATCA 2 cut(s) 496, 678
Kzo9I GATC 4 cut(s) 496, 678, 778, 1179
LmnI GCTCC 3 cut(s) 399, 543, 918
Lsp1109I GCAGC 1 cut(s) 1112
LweI GCATC 2 cut(s) 936, 1086
MaeI CTAG 4 cut(s) 615, 704, 800, 1257
MaeII ACGT 3 cut(s) 768, 892, 912
MaeIII GTNAC 3 cut(s) 5, 522, 1264
MalI GATC 4 cut(s) 498, 680, 780, 1181
MboI GATC 4 cut(s) 496, 678, 778, 1179
MboII GAAGA 8 cut(s) 127, 293, 463, 581, 916, 928, 1123, 1226
MhlI GDGCHC 3 cut(s) 172, 376, 640
MlsI TGGCCA 1 cut(s) 664
MluCI AATT 1 cut(s) 260
MluNI TGGCCA 1 cut(s) 664
MlyI GAGTC 2 cut(s) 75, 648
MmeI TCCRAC 3 cut(s) 155, 789, 1000
Mox20I TGGCCA 1 cut(s) 664
MscI TGGCCA 1 cut(s) 664
MseI TTAA 1 cut(s) 152
MslI CAYNNNNRTG 2 cut(s) 113, 624
Msp20I TGGCCA 1 cut(s) 664
MspA1I CMGCKG 2 cut(s) 380, 1011
MspI CCGG 8 cut(s) 157, 224, 275, 641, 794, 888, 951, 1044
MspR9I CCNGG 5 cut(s) 641, 642, 651, 729, 794
Mva1269I GAATGC 1 cut(s) 551
MvaI CCWGG 2 cut(s) 651, 729
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 3 cut(s) 194, 635, 1004
NciI CCSGG 3 cut(s) 641, 642, 794
NdeII GATC 4 cut(s) 496, 678, 778, 1179
NlaIII CATG 6 cut(s) 505, 565, 590, 629, 856, 1069
NlaIV GGNNCC 4 cut(s) 179, 375, 920, 1075
NmeAIII GCCGAG 1 cut(s) 903
NmuCI GTSAC 2 cut(s) 522, 1264
NspV TTCGAA 1 cut(s) 939
PagI TCATGA 1 cut(s) 586
PceI AGGCCT 2 cut(s) 702, 732
PcsI WCGNNNNNNNCGW 3 cut(s) 178, 774, 1229
PctI GAATGC 1 cut(s) 551
PinAI ACCGGT 1 cut(s) 274
PkrI GCNGC 2 cut(s) 1127, 1297
PleI GAGTC 2 cut(s) 75, 648
PpsI GAGTC 2 cut(s) 75, 648
Psp124BI GAGCTC 1 cut(s) 172
Psp6I CCWGG 2 cut(s) 649, 727
PspFI CCCAGC 1 cut(s) 1011
PspGI CCWGG 2 cut(s) 649, 727
PspN4I GGNNCC 4 cut(s) 179, 375, 920, 1075
PspPI GGNCC 7 cut(s) 44, 177, 196, 256, 796, 990, 1041
PvuII CAGCTG 2 cut(s) 380, 1011
RsaI GTAC 5 cut(s) 293, 878, 895, 1075, 1250
RsaNI GTAC 5 cut(s) 292, 877, 894, 1074, 1249
RseI CAYNNNNRTG 2 cut(s) 113, 624
SacI GAGCTC 1 cut(s) 172
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 2 cut(s) 1126, 1296
Sau3AI GATC 4 cut(s) 496, 678, 778, 1179
Sau96I GGNCC 7 cut(s) 44, 177, 196, 256, 796, 990, 1041
ScaI AGTACT 1 cut(s) 878
SchI GAGTC 2 cut(s) 75, 648
ScrFI CCNGG 5 cut(s) 641, 642, 651, 729, 794
SduI GDGCHC 3 cut(s) 172, 376, 640
SfaNI GCATC 2 cut(s) 936, 1086
SfuI TTCGAA 1 cut(s) 939
SinI GGWCC 4 cut(s) 44, 177, 796, 1041
SmaI CCCGGG 1 cut(s) 642
SmiMI CAYNNNNRTG 2 cut(s) 113, 624
Sse9I AATT 1 cut(s) 260
SseBI AGGCCT 2 cut(s) 702, 732
SsiI CCGC 5 cut(s) 47, 243, 670, 963, 1169
SspMI CTAG 4 cut(s) 615, 704, 800, 1257
SstI GAGCTC 1 cut(s) 172
StuI AGGCCT 2 cut(s) 702, 732
StyD4I CCNGG 5 cut(s) 639, 640, 649, 727, 792
StyI CCWWGG 2 cut(s) 703, 799
TaaI ACNGT 1 cut(s) 1205
TaiI ACGT 3 cut(s) 771, 895, 915
TaqI TCGA 6 cut(s) 166, 657, 777, 939, 1056, 1182
TaqII GACCGA 1 cut(s) 923
TasI AATT 1 cut(s) 260
TatI WGTACW 3 cut(s) 291, 876, 1248
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TscAI CASTG 2 cut(s) 120, 1210
TseFI GTSAC 2 cut(s) 522, 1264
TseI GCWGC 2 cut(s) 1125, 1295
Tsp45I GTSAC 2 cut(s) 522, 1264
TspDTI ATGAA 8 cut(s) 33, 233, 482, 575, 578, 841, 1082, 1227
TspGWI ACGGA 1 cut(s) 618
TspMI CCCGGG 1 cut(s) 640
TspRI CASTG 2 cut(s) 120, 1210
VpaK11BI GGWCC 4 cut(s) 44, 177, 796, 1041
XagI CCTNNNNNAGG 1 cut(s) 977
XcmI CCANNNNNNNNNTGG 1 cut(s) 657
XmaI CCCGGG 1 cut(s) 640
XmaJI CCTAGG 2 cut(s) 703, 799
XspI CTAG 4 cut(s) 615, 704, 800, 1257
ZrmI AGTACT 1 cut(s) 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.