Rh6DG452100

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
N/A
Physical Location & Seq
Reverse (-)
62401147 .. 62402049
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG452100.1

Sequence Viewer

Length: 354 bp
ATGGGCCTAACTGGCCTGATTGACATTGACACGCTCTCAGAGTTGCCGGCCCTCAAGACCATAAGCTTCATGAACAACGGCTTTGGAGGTCCACTGCCCGATGTGAAGAGACTTTCACTCATTAGTGTCTACTTATCCGAGAACCAATTCTCTGGTGATATCCCGGATGATGCTTTCAGTGGCATGGGTGATACCTTGAAGAAAGTTTACTTGGCCAAAAATGGATTTACGGGGAAGATACCGAGTTCTTTGGTTGATTTGCCTAAGCTCATTGAGTTGGACCTTGGGGATAACCAGTTTAGTGGGAAGATACCAAATTTTCAACCAAGGAACTGGACGTTTTACAGACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

117

Amino Acids

12.84

Weight (kDa)

4.91

Isoelectric Point (pI)

13.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 40 - 100 1.2e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 129
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 1 cut(s) 316
AgsI TTSAA 2 cut(s) 199, 323
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 2 cut(s) 66, 268
AluI AGCT 2 cut(s) 66, 268
Alw26I GTCTC 1 cut(s) 103
AoxI GGCC 4 cut(s) 4, 13, 48, 213
ApoI RAATTY 1 cut(s) 316
Asp700I GAANNNNTTC 1 cut(s) 146
AspS9I GGNCC 4 cut(s) 4, 49, 89, 280
AsuC2I CCSGG 1 cut(s) 164
AsuHPI GGTGA 2 cut(s) 167, 200
AvaII GGWCC 2 cut(s) 89, 280
BalI TGGCCA 1 cut(s) 215
BarI GAAGNNNNNNTAC 2 cut(s) 191, 223
BceAI ACGGC 1 cut(s) 94
BcnI CCSGG 1 cut(s) 164
BcoDI GTCTC 1 cut(s) 103
BglI GCCNNNNNGGC 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 164
Bme18I GGWCC 2 cut(s) 89, 280
BmgT120I GGNCC 4 cut(s) 4, 49, 89, 280
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 1 cut(s) 160
Bpu10I CCTNAGC 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 283, 326
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 3 cut(s) 16, 295, 338
BseDI CCNNGG 2 cut(s) 283, 326
BseGI GGATG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 3 cut(s) 16, 295, 338
BshFI GGCC 4 cut(s) 6, 15, 50, 215
BsiSI CCGG 2 cut(s) 47, 164
BsmAI GTCTC 1 cut(s) 103
BsnI GGCC 4 cut(s) 6, 15, 50, 215
BspANI GGCC 4 cut(s) 6, 15, 50, 215
BspCNI CTCAG 1 cut(s) 50
BspHI TCATGA 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 46
BsrI ACTGG 3 cut(s) 16, 295, 338
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 2 cut(s) 283, 326
BssT1I CCWWGG 2 cut(s) 283, 326
Bst6I CTCTTC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 2 cut(s) 37, 264
BstF5I GGATG 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 162
BstXI CCANNNNNNTGG 3 cut(s) 152, 302, 333
BsuRI GGCC 4 cut(s) 6, 15, 50, 215
BtsCI GGATG 1 cut(s) 172
BtsI GCAGTG 1 cut(s) 92
BtsIMutI CAGTG 2 cut(s) 92, 184
Cac8I GCNNGC 1 cut(s) 48
CciI TCATGA 1 cut(s) 69
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 4 cut(s) 4, 49, 89, 280
CviAII CATG 2 cut(s) 70, 184
CviJI RGCY 7 cut(s) 6, 15, 50, 66, 81, 215, 268
CviKI_1 RGCY 7 cut(s) 6, 15, 50, 66, 81, 215, 268
DdeI CTNAG 2 cut(s) 37, 264
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco130I CCWWGG 2 cut(s) 283, 326
Eco32I GATATC 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 89, 280
EcoRV GATATC 1 cut(s) 160
EcoT14I CCWWGG 2 cut(s) 283, 326
ErhI CCWWGG 2 cut(s) 283, 326
FaeI CATG 2 cut(s) 73, 187
FaiI YATR 3 cut(s) 62, 71, 185
FatI CATG 2 cut(s) 69, 183
FblI GTMKAC 1 cut(s) 129
FokI GGATG 1 cut(s) 179
HaeIII GGCC 4 cut(s) 6, 15, 50, 215
HapII CCGG 2 cut(s) 47, 164
Hin1II CATG 2 cut(s) 73, 187
HindIII AAGCTT 1 cut(s) 64
HpaII CCGG 2 cut(s) 47, 164
HphI GGTGA 2 cut(s) 167, 200
Hpy166II GTNNAC 3 cut(s) 92, 130, 208
Hpy188I TCNGA 2 cut(s) 40, 139
Hpy188III TCNNGA 2 cut(s) 55, 70
Hpy8I GTNNAC 3 cut(s) 92, 130, 208
HpyCH4IV ACGT 1 cut(s) 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 2 cut(s) 37, 264
HpySE526I ACGT 1 cut(s) 338
Hsp92II CATG 2 cut(s) 73, 187
KroI GCCGGC 1 cut(s) 46
KroNI GCCGGC 1 cut(s) 48
LpnPI CCDG 6 cut(s) 29, 60, 138, 177, 308, 319
LweI GCATC 1 cut(s) 160
MaeII ACGT 1 cut(s) 338
MboII GAAGA 4 cut(s) 118, 211, 247, 319
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 2 cut(s) 146, 316
MluNI TGGCCA 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 2 cut(s) 62, 80
Mox20I TGGCCA 1 cut(s) 215
MroNI GCCGGC 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 146
MscI TGGCCA 1 cut(s) 215
Msp20I TGGCCA 1 cut(s) 215
MspI CCGG 2 cut(s) 47, 164
MspR9I CCNGG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 12
NaeI GCCGGC 1 cut(s) 48
NciI CCSGG 1 cut(s) 164
NgoMIV GCCGGC 1 cut(s) 46
NlaIII CATG 2 cut(s) 73, 187
PagI TCATGA 1 cut(s) 69
PdiI GCCGGC 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 162
PspPI GGNCC 4 cut(s) 4, 49, 89, 280
Sau96I GGNCC 4 cut(s) 4, 49, 89, 280
ScrFI CCNGG 1 cut(s) 164
SetI ASST 6 cut(s) 68, 91, 197, 270, 285, 341
SfaNI GCATC 1 cut(s) 160
SfiI GGCCNNNNNGGCC 1 cut(s) 12
SinI GGWCC 2 cut(s) 89, 280
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 2 cut(s) 146, 316
StyD4I CCNGG 1 cut(s) 162
StyI CCWWGG 2 cut(s) 283, 326
TaiI ACGT 1 cut(s) 341
TasI AATT 2 cut(s) 146, 316
TscAI CASTG 2 cut(s) 99, 184
TspDTI ATGAA 2 cut(s) 58, 86
TspRI CASTG 2 cut(s) 99, 184
VpaK11BI GGWCC 2 cut(s) 89, 280
XapI RAATTY 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.