Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3140194 .. 3145783

Gene Structure 5590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG046300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGATGATATTTCCTCACCAACCGCATTCTGAAGATCATAACCTTCCAGTCATTACCTCTAATGATTTCCAGACCATGTTTCAGGACAACAAGCCCTGGCTAATTCAGTTGTGCTCATTTGAGAGCAAAAGCTGTGATCAATTTTCTCATGCCTGGAAAGAATTGGTAGATCTTGAAGTGATTCAGCTGGCAACATATCTTGCTGACAGAAAACCAACCGGACAACCTTTCTTCAGGAATGGCCTTCCTTCTTTTGTCGCTTTTCCCCAGGGATGTAAAAGTGCCAAGTGCCTTATTAGCTGCAAAGCAATTGGTGATGTGGACTTGAACAAGTCTGAGCCTTGGGATTTGCCACATAAAGTGAAAATGGGAGAGAAGGAATGGTACTTTTTCTGTGTGAGGGATAGAAAGTATCCAACTGGTCTGAGGACAAACGGAGCAACTGAAGCTGGATATTGGAAAGCTGCTGGGAAAGACAAGGAGATTTACAAAGGGAAATCCTTGAACAAATGGGTGATTTGTAGGGTCTTTGAAAAATCTGCTGGTGGTAAAAAAATCCAAATCACTGGACTTGTGAATTTGGGTTCTCATGGAACTGAAATGCGTTGTTCTGGTTTACCACCATTGTTGGACACAGCGCCTTACAATGGTGCCAAGACCAGACCGGCTTCAGAGTCGAATTACGTGCCCTGCTTCTCCAACCATGAATCCATTGATTCTCAAAGAAACCAAGGGATTGTTGATTACATCAAAGGCAATCCTCTTTTCTCCGTTTCTTCGAATCCTTCAAACAACAACGCTTTCCCACGAGTCACGTATCAGAATTCACTCTATTCTGCTCCTGTTTCATCAGGAAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

287

Amino Acids

32.18

Weight (kDa)

8.75

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	97 - 178	6.2e-20	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	650
AciI	CCGC	1 cut(s)	23
AcsI	RAATTY	3 cut(s)	577, 823, 856
AcuI	CTGAAG	4 cut(s)	51, 217, 465, 654
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	647
AgsI	TTSAA	5 cut(s)	176, 328, 505, 533, 789
AjnI	CCWGG	3 cut(s)	95, 152, 267
AluBI	AGCT	5 cut(s)	132, 187, 300, 449, 464
AluI	AGCT	5 cut(s)	132, 187, 300, 449, 464
Alw21I	GWGCWC	1 cut(s)	116
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	300, 464
ApoI	RAATTY	3 cut(s)	577, 823, 856
Asp700I	GAANNNNTTC	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	640
AsuHPI	GGTGA	3 cut(s)	8, 326, 526
AsuII	TTCGAA	1 cut(s)	779
BaeGI	GKGCMC	1 cut(s)	690
BanI	GGYRCC	1 cut(s)	650
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
BauI	CACGAG	1 cut(s)	807
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	287, 451
BcgI	CGANNNNNNTGC	2 cut(s)	667, 701
BciT130I	CCWGG	3 cut(s)	97, 154, 269
BciVI	GTATCC	1 cut(s)	423
BclI	TGATCA	1 cut(s)	136
BfaI	CTAG	1 cut(s)	862
BfoI	RGCGCY	1 cut(s)	641
BfuI	GTATCC	1 cut(s)	423
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	2 cut(s)	301, 465
BlsI	GCNGC	2 cut(s)	302, 466
Bme1390I	CCNGG	3 cut(s)	97, 154, 269
BmiI	GGNNCC	1 cut(s)	652
BmrFI	CCNGG	3 cut(s)	97, 154, 269
Bpu14I	TTCGAA	1 cut(s)	779
BsaAI	YACGTR	2 cut(s)	685, 816
BsaJI	CCNNGG	5 cut(s)	95, 267, 268, 341, 730
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	1 cut(s)	647
Bse118I	RCCGGY	1 cut(s)	664
BseBI	CCWGG	3 cut(s)	97, 154, 269
BseDI	CCNNGG	5 cut(s)	95, 267, 268, 341, 730
BseGI	GGATG	1 cut(s)	278
BseLI	CCNNNNNNNGG	1 cut(s)	647
BseMII	CTCAG	2 cut(s)	327, 416
BseNI	ACTGG	3 cut(s)	47, 424, 571
BseSI	GKGCMC	1 cut(s)	690
BseXI	GCAGC	2 cut(s)	287, 451
BseYI	CCCAGC	1 cut(s)	467
BshFI	GGCC	1 cut(s)	243
BshNI	GGYRCC	1 cut(s)	650
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	219, 665
BslI	CCNNNNNNNGG	1 cut(s)	647
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	243
Bsp119I	TTCGAA	1 cut(s)	779
Bsp1286I	GDGCHC	2 cut(s)	116, 690
Bsp143I	GATC	3 cut(s)	34, 136, 169
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	2 cut(s)	328, 417
BspLI	GGNNCC	1 cut(s)	652
BspT104I	TTCGAA	1 cut(s)	779
BspT107I	GGYRCC	1 cut(s)	650
BsrFI	RCCGGY	1 cut(s)	664
BsrI	ACTGG	3 cut(s)	47, 424, 571
BssAI	RCCGGY	1 cut(s)	664
BssECI	CCNNGG	5 cut(s)	95, 267, 268, 341, 730
BssMI	GATC	3 cut(s)	34, 136, 169
BssSI	CACGAG	1 cut(s)	807
BssT1I	CCWWGG	2 cut(s)	341, 730
Bst2BI	CACGAG	1 cut(s)	807
Bst2UI	CCWGG	3 cut(s)	97, 154, 269
BstBAI	YACGTR	2 cut(s)	685, 816
BstBI	TTCGAA	1 cut(s)	779
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	2 cut(s)	336, 425
BstF5I	GGATG	1 cut(s)	278
BstH2I	RGCGCY	1 cut(s)	641
BstHHI	GCGC	1 cut(s)	640
BstKTI	GATC	3 cut(s)	37, 139, 172
BstMBI	GATC	3 cut(s)	34, 136, 169
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 446
BstNI	CCWGG	3 cut(s)	97, 154, 269
BstSCI	CCNGG	3 cut(s)	95, 152, 267
BstSLI	GKGCMC	1 cut(s)	690
BstV1I	GCAGC	2 cut(s)	287, 451
BstX2I	RGATCY	1 cut(s)	169
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstYI	RGATCY	1 cut(s)	169
BsuI	GTATCC	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	278
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	640
Cfr10I	RCCGGY	1 cut(s)	664
Csp6I	GTAC	1 cut(s)	385
CspCI	CAANNNNNGTGG	2 cut(s)	609, 644
CviAII	CATG	4 cut(s)	76, 149, 590, 704
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	2 cut(s)	336, 425
DpnI	GATC	3 cut(s)	36, 138, 171
DpnII	GATC	3 cut(s)	34, 136, 169
Eco130I	CCWWGG	2 cut(s)	341, 730
Eco57I	CTGAAG	4 cut(s)	51, 217, 465, 654
EcoRI	GAATTC	1 cut(s)	823
EcoRII	CCWGG	3 cut(s)	95, 152, 267
EcoT14I	CCWWGG	2 cut(s)	341, 730
ErhI	CCWWGG	2 cut(s)	341, 730
FaeI	CATG	4 cut(s)	79, 152, 593, 707
FaiI	YATR	7 cut(s)	39, 77, 150, 196, 357, 591, 705
FatI	CATG	4 cut(s)	75, 148, 589, 703
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	2 cut(s)	301, 465
FokI	GGATG	1 cut(s)	285
Fsp4HI	GCNGC	2 cut(s)	301, 465
FspBI	CTAG	1 cut(s)	862
GlaI	GCGC	1 cut(s)	639
GluI	GCNGC	2 cut(s)	301, 465
GsaI	CCCAGC	1 cut(s)	471
HaeII	RGCGCY	1 cut(s)	641
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	2 cut(s)	219, 665
HhaI	GCGC	1 cut(s)	640
Hin1II	CATG	4 cut(s)	79, 152, 593, 707
Hin6I	GCGC	1 cut(s)	638
HinP1I	GCGC	1 cut(s)	638
HinfI	GANTC	6 cut(s)	181, 674, 707, 716, 781, 810
HpaII	CCGG	2 cut(s)	219, 665
HphI	GGTGA	3 cut(s)	8, 326, 526
Hpy166II	GTNNAC	2 cut(s)	322, 617
Hpy188I	TCNGA	5 cut(s)	31, 337, 426, 673, 822
Hpy188III	TCNNGA	5 cut(s)	70, 83, 173, 235, 852
Hpy8I	GTNNAC	2 cut(s)	322, 617
HpyAV	CCTTC	5 cut(s)	53, 254, 258, 370, 795
HpyCH4IV	ACGT	2 cut(s)	684, 815
HpyCH4V	TGCA	1 cut(s)	303
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 446
HpyF3I	CTNAG	2 cut(s)	336, 425
HpySE526I	ACGT	2 cut(s)	684, 815
Hsp92II	CATG	4 cut(s)	79, 152, 593, 707
HspAI	GCGC	1 cut(s)	638
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	34, 136, 169
LmnI	GCTCC	2 cut(s)	437, 844
Lsp1109I	GCAGC	2 cut(s)	287, 451
MaeI	CTAG	1 cut(s)	862
MaeII	ACGT	2 cut(s)	684, 815
MaeIII	GTNAC	1 cut(s)	811
MalI	GATC	3 cut(s)	36, 138, 171
MboI	GATC	3 cut(s)	34, 136, 169
MboII	GAAGA	3 cut(s)	44, 223, 768
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	2 cut(s)	116, 690
MluCI	AATT	8 cut(s)	102, 140, 161, 309, 577, 679, 823, 856
MlyI	GAGTC	2 cut(s)	683, 819
MmeI	TCCRAC	3 cut(s)	440, 609, 723
MnlI	CCTC	5 cut(s)	24, 67, 393, 420, 771
MroXI	GAANNNNTTC	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	187
MspI	CCGG	2 cut(s)	219, 665
MspR9I	CCNGG	3 cut(s)	97, 154, 269
MunI	CAATTG	1 cut(s)	309
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	3 cut(s)	97, 154, 269
MwoI	GCNNNNNNNGC	2 cut(s)	297, 446
NdeII	GATC	3 cut(s)	34, 136, 169
NlaIII	CATG	4 cut(s)	79, 152, 593, 707
NlaIV	GGNNCC	1 cut(s)	652
NmuCI	GTSAC	1 cut(s)	811
NspV	TTCGAA	1 cut(s)	779
PasI	CCCWGGG	1 cut(s)	268
PctI	GAATGC	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	4 cut(s)	181, 707, 716, 781
PkrI	GCNGC	2 cut(s)	302, 466
PleI	GAGTC	2 cut(s)	682, 818
PpsI	GAGTC	2 cut(s)	682, 818
Ppu21I	YACGTR	2 cut(s)	685, 816
Psp6I	CCWGG	3 cut(s)	95, 152, 267
PspFI	CCCAGC	1 cut(s)	467
PspGI	CCWGG	3 cut(s)	95, 152, 267
PspN4I	GGNNCC	1 cut(s)	652
PsuI	RGATCY	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
SatI	GCNGC	2 cut(s)	301, 465
Sau3AI	GATC	3 cut(s)	34, 136, 169
SchI	GAGTC	2 cut(s)	683, 819
ScrFI	CCNGG	3 cut(s)	97, 154, 269
SduI	GDGCHC	2 cut(s)	116, 690
SfuI	TTCGAA	1 cut(s)	779
Sse9I	AATT	8 cut(s)	102, 140, 161, 309, 577, 679, 823, 856
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	862
StyD4I	CCNGG	3 cut(s)	95, 152, 267
StyI	CCWWGG	2 cut(s)	341, 730
TaiI	ACGT	2 cut(s)	687, 818
TaqI	TCGA	2 cut(s)	677, 779
TasI	AATT	8 cut(s)	102, 140, 161, 309, 577, 679, 823, 856
TfiI	GAWTC	4 cut(s)	181, 707, 716, 781
TscAI	CASTG	1 cut(s)	571
TseFI	GTSAC	1 cut(s)	811
TseI	GCWGC	2 cut(s)	300, 464
Tsp45I	GTSAC	1 cut(s)	811
TspDTI	ATGAA	2 cut(s)	720, 837
TspGWI	ACGGA	2 cut(s)	450, 760
TspRI	CASTG	1 cut(s)	571
XapI	RAATTY	3 cut(s)	577, 823, 856
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.