Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

10071303 .. 10071759

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG127300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATTTTGGTAGCTTGGGAGAAGGCAATTGTTTGGGCTATTCTCATTCGGTCCCCTTCGAACTTTGGGCTAGGATTCGTTGGACCTGATCTATTTCAAGGGAGGGTGAGAGAAGCGGCAGACCAGAGAATTAAAGGGGAGTATGATGAAGAGGAGATGGAAGTTGCACTGAAGCTTGGGCTGGCTTGTGATCATCCTGATCCTCAGAGAAGGCCTAGCATGCATGAAGGAAATTATGGCGATTTTGGGCGGCGAGACCGTGTCTGTTCCAGCACCTGCCGCATTGTTATCGGAACTGGGCATGCGGCGAGAGTGGCTATGTTGCTGGCAGCGAGCGAGGAAGAATCCAGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0016020 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lectin_legB Pkinase

Protein Analysis

118

Amino Acids

13.16

Weight (kDa)

5.91

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	284
AciI	CCGC	4 cut(s)	116, 250, 280, 305
AclWI	GGATC	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	347
AluBI	AGCT	2 cut(s)	14, 175
AluI	AGCT	2 cut(s)	14, 175
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	276
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	329
AspS9I	GGNCC	2 cut(s)	51, 83
AsuHPI	GGTGA	1 cut(s)	118
AsuII	TTCGAA	1 cut(s)	59
AvaII	GGWCC	2 cut(s)	51, 83
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	1 cut(s)	151
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	349
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	2 cut(s)	71, 216
BfuAI	ACCTGC	1 cut(s)	284
BisI	GCNGC	5 cut(s)	117, 251, 280, 306, 330
BlsI	GCNGC	5 cut(s)	118, 252, 281, 307, 331
Bme1390I	CCNGG	1 cut(s)	349
Bme18I	GGWCC	2 cut(s)	51, 83
BmgT120I	GGNCC	2 cut(s)	51, 83
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	349
BmrI	ACTGGG	1 cut(s)	306
BmuI	ACTGGG	1 cut(s)	306
Bpu14I	TTCGAA	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	249
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	341
BshFI	GGCC	1 cut(s)	214
BslFI	GGGAC	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	214
Bso31I	GGTCTC	1 cut(s)	249
Bsp119I	TTCGAA	1 cut(s)	59
Bsp143I	GATC	3 cut(s)	88, 190, 199
BspACI	CCGC	4 cut(s)	116, 250, 280, 305
BspANI	GGCC	1 cut(s)	214
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	53
BspMI	ACCTGC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	194
BspT104I	TTCGAA	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	301
BssMI	GATC	3 cut(s)	88, 190, 199
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	59
BstC8I	GCNNGC	5 cut(s)	183, 221, 303, 327, 334
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	3 cut(s)	91, 193, 202
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	3 cut(s)	88, 190, 199
BstMWI	GCNNNNNNNGC	3 cut(s)	220, 279, 314
BstNI	CCWGG	1 cut(s)	349
BstNSI	RCATGY	2 cut(s)	223, 305
BstSCI	CCNGG	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	167
BveI	ACCTGC	1 cut(s)	284
Cac8I	GCNNGC	5 cut(s)	183, 221, 303, 327, 334
CaiI	CAGNNNCTG	1 cut(s)	276
Cfr13I	GGNCC	2 cut(s)	51, 83
CviAII	CATG	3 cut(s)	220, 224, 302
CviJI	RGCY	8 cut(s)	14, 38, 70, 175, 181, 185, 214, 317
CviKI_1	RGCY	8 cut(s)	14, 38, 70, 175, 181, 185, 214, 317
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	3 cut(s)	90, 192, 201
DpnII	GATC	3 cut(s)	88, 190, 199
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	249
Eco47I	GGWCC	2 cut(s)	51, 83
Eco57I	CTGAAG	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	347
EcoT22I	ATGCAT	1 cut(s)	225
FaeI	CATG	3 cut(s)	223, 227, 305
FaiI	YATR	6 cut(s)	144, 221, 225, 237, 303, 320
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	3 cut(s)	219, 223, 301
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	5 cut(s)	117, 251, 280, 306, 330
FokI	GGATG	1 cut(s)	180
Fsp4HI	GCNGC	5 cut(s)	117, 251, 280, 306, 330
FspBI	CTAG	2 cut(s)	71, 216
GluI	GCNGC	5 cut(s)	117, 251, 280, 306, 330
HaeIII	GGCC	1 cut(s)	214
Hin1II	CATG	3 cut(s)	223, 227, 305
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	2 cut(s)	75, 344
HphI	GGTGA	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	207, 293
Hpy188III	TCNNGA	1 cut(s)	197
HpyAV	CCTTC	4 cut(s)	16, 66, 204, 221
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	2 cut(s)	167, 223
HpyF10VI	GCNNNNNNNGC	3 cut(s)	220, 279, 314
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	3 cut(s)	223, 227, 305
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	88, 190, 199
LpnPI	CCDG	9 cut(s)	99, 137, 167, 210, 282, 283, 289, 311, 334
Lsp1109I	GCAGC	1 cut(s)	341
MaeI	CTAG	2 cut(s)	71, 216
MalI	GATC	3 cut(s)	90, 192, 201
MboI	GATC	3 cut(s)	88, 190, 199
MboII	GAAGA	2 cut(s)	161, 353
MfeI	CAATTG	1 cut(s)	27
MluCI	AATT	3 cut(s)	27, 129, 232
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	4 cut(s)	96, 145, 213, 331
Mph1103I	ATGCAT	1 cut(s)	225
MseI	TTAA	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	349
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	3 cut(s)	220, 279, 314
NdeII	GATC	3 cut(s)	88, 190, 199
NlaIII	CATG	3 cut(s)	223, 227, 305
NlaIV	GGNNCC	1 cut(s)	53
NsiI	ATGCAT	1 cut(s)	225
NspI	RCATGY	2 cut(s)	223, 305
NspV	TTCGAA	1 cut(s)	59
PaeI	GCATGC	2 cut(s)	223, 305
PaqCI	CACCTGC	1 cut(s)	284
PceI	AGGCCT	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	75, 344
PflFI	GACNNNGTC	1 cut(s)	260
PfoI	TCCNGGA	1 cut(s)	347
PkrI	GCNGC	5 cut(s)	118, 252, 281, 307, 331
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	2 cut(s)	51, 83
PstNI	CAGNNNCTG	1 cut(s)	276
PsyI	GACNNNGTC	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	5 cut(s)	117, 251, 280, 306, 330
Sau3AI	GATC	3 cut(s)	88, 190, 199
Sau96I	GGNCC	2 cut(s)	51, 83
ScrFI	CCNGG	1 cut(s)	349
SetI	ASST	4 cut(s)	16, 88, 177, 278
SfuI	TTCGAA	1 cut(s)	59
SinI	GGWCC	2 cut(s)	51, 83
SphI	GCATGC	2 cut(s)	223, 305
Sse9I	AATT	3 cut(s)	27, 129, 232
SseBI	AGGCCT	1 cut(s)	214
SsiI	CCGC	4 cut(s)	116, 250, 280, 305
SspMI	CTAG	2 cut(s)	71, 216
StuI	AGGCCT	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	260
TaqI	TCGA	1 cut(s)	59
TaqII	GACCGA	1 cut(s)	39
TasI	AATT	3 cut(s)	27, 129, 232
TauI	GCSGC	4 cut(s)	119, 253, 282, 308
TfiI	GAWTC	2 cut(s)	75, 344
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	174
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	2 cut(s)	162, 240
TspRI	CASTG	1 cut(s)	174
Tth111I	GACNNNGTC	1 cut(s)	260
VpaK11BI	GGWCC	2 cut(s)	51, 83
XceI	RCATGY	2 cut(s)	223, 305
XspI	CTAG	2 cut(s)	71, 216
Zsp2I	ATGCAT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.