Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11136482 .. 11140741

Gene Structure 4260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG138600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGAAGGAGGGCAGTGATGGGTTTGTTAGGGCCGATCAGATTGATCTCAAGAGCTTGGATGAGCAGCTGGAGAGACATCTCAACAGGGTGTTGACTTTGGAGAAGACCAAGATGAGAGGAGACCAAGACACCAGTTCCACCACCACCACCATCACCACCACCACCAACAACAACAACCTCAACAGTCTCAACCTCAGCACCACCTCCGCCGCCGCCACCTCCACTTCCGGCATGACTCTCTCCATCCCCAAGCGCCACAGGCAGGAGTGGGAGATCGACCCTTCCAAGCTCATCATCAAGACCGTCATTGCACGTGGCACGTTCGGCACCGTCCACCGTGGCATCTACGACGGCCAAGATGTCGCCGTGAAATTACTCGACTGGGGTGAAGAGGGTCACAGGACGGACGCTGAAATTGCTTCTCTAAGGGCAGCTTTTACCCAAGAAGTTGCTGTCTGGCATAAACTAGAACATCCTAATGTTACTAAGTTTATAGGGGCGACAATGGGTTCTTCAGAACTACAAATTCAGACTGAAAATGGTCAAATTGGCATGCCAAGTAATATCTGTTGTGTTGTCGTGGAATATCTTCCTGGGGGTGCTCTAAAATCATACCTTATAAAGAATAGGAGAAGGAAGTTGGCTTTTAAGGTCGTGGTCCAGTTGGCACTAGATCTTGCTAGAGGGTTAAGTTACCTGCACTCACAAAAGATTGTTCACCGAGATGTAAAGACAGAGAACATGCTGCTTGACAAGACACGTACTGTCAAGATTGCTGATTTTGGTGTTGCTCGTGTTGAAGCTTCAAATCCTAATGACATGACTGGGGAGACTGGCACACTTGGTTACATGGCTCCTGAGGTTCTCAATGGAAACCCATATAATCGGAAATGTGATGTGTACAGTTTTGGCATCTGTCTATGGGAGATATACTGCTGTGACATGCCATATCCTGACCTTAGCTTCTCGGAAGTGACTTCAGCTGTGGTTCGCCAGGTAAGCCATTCTCCAATTTCAAGTTTTTCAACCATTGGCACATCTTTCTGGTGCTTATTAAAAATTTGTTATTTACTTAGAGATAAGAATTCCTTTGTTGGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

367

Amino Acids

40.81

Weight (kDa)

7.6

Isoelectric Point (pI)

28.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	99 - 332	7.6e-49	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	101 - 332	3.1e-45	Protein kinase domain
Kinase-like	PF14531	208 - 317	1.6e-06	Kinase-like
Pkinase_fungal	PF17667	228 - 303	5.3e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	620
Acc36I	ACCTGC	1 cut(s)	705
AccB1I	GGYRCC	1 cut(s)	326
AciI	CCGC	3 cut(s)	207, 210, 213
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	3 cut(s)	525, 1059, 1084
AcuI	CTGAAG	2 cut(s)	498, 963
AcvI	CACGTG	1 cut(s)	314
AfaI	GTAC	2 cut(s)	763, 902
AfiI	CCNNNNNNNGG	2 cut(s)	262, 1095
AflIII	ACRYGT	1 cut(s)	758
AgsI	TTSAA	4 cut(s)	800, 807, 1017, 1026
AjnI	CCWGG	2 cut(s)	592, 993
AluBI	AGCT	7 cut(s)	54, 67, 289, 434, 803, 963, 983
AluI	AGCT	7 cut(s)	54, 67, 289, 434, 803, 963, 983
Alw21I	GWGCWC	1 cut(s)	604
Alw26I	GTCTC	4 cut(s)	67, 114, 191, 824
AoxI	GGCC	2 cut(s)	30, 352
ApeKI	GCWGC	3 cut(s)	64, 431, 745
ApoI	RAATTY	3 cut(s)	525, 1059, 1084
Asp700I	GAANNNNTTC	1 cut(s)	588
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	30, 658
AsuHPI	GGTGA	3 cut(s)	145, 398, 710
AvaII	GGWCC	1 cut(s)	658
AxyI	CCTNAGG	1 cut(s)	858
BanI	GGYRCC	1 cut(s)	326
BauI	CACGAG	1 cut(s)	792
BbrPI	CACGTG	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	604
BbvCI	CCTCAGC	1 cut(s)	194
BbvI	GCAGC	3 cut(s)	76, 443, 732
BccI	CCATC	3 cut(s)	11, 158, 251
BceAI	ACGGC	2 cut(s)	350, 367
BciT130I	CCWGG	2 cut(s)	594, 995
BcoDI	GTCTC	4 cut(s)	67, 114, 191, 824
BfaI	CTAG	3 cut(s)	467, 671, 681
BfoI	RGCGCY	1 cut(s)	256
BfuAI	ACCTGC	1 cut(s)	705
BglII	AGATCT	1 cut(s)	673
BisI	GCNGC	5 cut(s)	65, 210, 213, 432, 746
BlsI	GCNGC	5 cut(s)	66, 211, 214, 433, 747
Bme1390I	CCNGG	2 cut(s)	594, 995
Bme18I	GGWCC	1 cut(s)	658
BmgT120I	GGNCC	2 cut(s)	30, 658
BmiI	GGNNCC	2 cut(s)	328, 855
BmrFI	CCNGG	2 cut(s)	594, 995
BmrI	ACTGGG	2 cut(s)	391, 834
BmsI	GCATC	2 cut(s)	351, 921
BmuI	ACTGGG	2 cut(s)	391, 834
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	89
Bpu10I	CCTNAGC	2 cut(s)	194, 959
BpuEI	CTTGAG	1 cut(s)	32
BsaAI	YACGTR	2 cut(s)	314, 761
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	337, 593
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 1095
Bse1I	ACTGG	5 cut(s)	132, 386, 661, 829, 838
Bse21I	CCTNAGG	1 cut(s)	858
Bse3DI	GCAATG	1 cut(s)	306
BseBI	CCWGG	2 cut(s)	594, 995
BseDI	CCNNGG	2 cut(s)	337, 593
BseGI	GGATG	3 cut(s)	64, 243, 472
BseLI	CCNNNNNNNGG	2 cut(s)	262, 1095
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	2 cut(s)	208, 849
BseNI	ACTGG	5 cut(s)	132, 386, 661, 829, 838
BseRI	GAGGAG	1 cut(s)	132
BseXI	GCAGC	3 cut(s)	76, 443, 732
BsgI	GTGCAG	1 cut(s)	683
BshFI	GGCC	2 cut(s)	32, 354
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	604
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	2 cut(s)	262, 1095
BsmAI	GTCTC	4 cut(s)	67, 114, 191, 824
BsnI	GGCC	2 cut(s)	32, 354
Bso31I	GGTCTC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	604
Bsp1407I	TGTACA	1 cut(s)	900
Bsp143I	GATC	4 cut(s)	34, 43, 273, 673
BspACI	CCGC	3 cut(s)	207, 210, 213
BspANI	GGCC	2 cut(s)	32, 354
BspCNI	CTCAG	2 cut(s)	207, 850
BspLI	GGNNCC	2 cut(s)	328, 855
BspMI	ACCTGC	1 cut(s)	705
BspT107I	GGYRCC	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	306
BsrGI	TGTACA	1 cut(s)	900
BsrI	ACTGG	5 cut(s)	132, 386, 661, 829, 838
BssECI	CCNNGG	2 cut(s)	337, 593
BssMI	GATC	4 cut(s)	34, 43, 273, 673
BssSI	CACGAG	1 cut(s)	792
Bst2BI	CACGAG	1 cut(s)	792
Bst2UI	CCWGG	2 cut(s)	594, 995
Bst4CI	ACNGT	6 cut(s)	185, 304, 331, 338, 766, 905
Bst6I	CTCTTC	1 cut(s)	384
BstAUI	TGTACA	1 cut(s)	900
BstBAI	YACGTR	2 cut(s)	314, 761
BstC8I	GCNNGC	1 cut(s)	554
BstDEI	CTNAG	6 cut(s)	194, 425, 486, 858, 959, 1073
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	3 cut(s)	64, 243, 472
BstH2I	RGCGCY	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	4 cut(s)	37, 46, 276, 676
BstMAI	GTCTC	4 cut(s)	67, 114, 191, 824
BstMBI	GATC	4 cut(s)	34, 43, 273, 673
BstMWI	GCNNNNNNNGC	4 cut(s)	259, 324, 416, 999
BstNI	CCWGG	2 cut(s)	594, 995
BstNSI	RCATGY	3 cut(s)	556, 745, 946
BstSCI	CCNGG	2 cut(s)	592, 993
BstV1I	GCAGC	3 cut(s)	76, 443, 732
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	673
Bsu36I	CCTNAGG	1 cut(s)	858
BsuRI	GGCC	2 cut(s)	32, 354
BtgI	CCRYGG	1 cut(s)	337
BtsCI	GGATG	3 cut(s)	64, 243, 472
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
BveI	ACCTGC	1 cut(s)	705
Cac8I	GCNNGC	1 cut(s)	554
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	30, 658
CseI	GACGC	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	762, 901
CviAII	CATG	6 cut(s)	232, 553, 742, 820, 850, 943
CviQI	GTAC	2 cut(s)	762, 901
DdeI	CTNAG	6 cut(s)	194, 425, 486, 858, 959, 1073
DpnI	GATC	4 cut(s)	36, 45, 275, 675
DpnII	GATC	4 cut(s)	34, 43, 273, 673
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
EciI	GGCGGA	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	658
Eco57I	CTGAAG	2 cut(s)	498, 963
Eco72I	CACGTG	1 cut(s)	314
Eco81I	CCTNAGG	1 cut(s)	858
EcoRI	GAATTC	1 cut(s)	1084
EcoRII	CCWGG	2 cut(s)	592, 993
FaeI	CATG	6 cut(s)	235, 556, 745, 823, 853, 946
FalI	AAGNNNNNCTT	3 cut(s)	418, 450, 1073
FatI	CATG	6 cut(s)	231, 552, 741, 819, 849, 942
Fnu4HI	GCNGC	5 cut(s)	65, 210, 213, 432, 746
FokI	GGATG	3 cut(s)	71, 230, 459
Fsp4HI	GCNGC	5 cut(s)	65, 210, 213, 432, 746
FspBI	CTAG	3 cut(s)	467, 671, 681
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	5 cut(s)	65, 210, 213, 432, 746
GsuI	CTGGAG	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	256
HaeIII	GGCC	2 cut(s)	32, 354
HapII	CCGG	1 cut(s)	228
HgaI	GACGC	1 cut(s)	416
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	6 cut(s)	235, 556, 745, 823, 853, 946
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HindIII	AAGCTT	1 cut(s)	801
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	3 cut(s)	145, 398, 710
Hpy166II	GTNNAC	4 cut(s)	93, 334, 718, 901
Hpy188I	TCNGA	5 cut(s)	39, 517, 531, 888, 970
Hpy188III	TCNNGA	5 cut(s)	49, 298, 769, 857, 953
Hpy8I	GTNNAC	4 cut(s)	93, 334, 718, 901
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	2 cut(s)	291, 627
HpyCH4III	ACNGT	6 cut(s)	185, 304, 331, 338, 766, 905
HpyCH4IV	ACGT	3 cut(s)	313, 320, 760
HpyCH4V	TGCA	2 cut(s)	311, 700
HpyF10VI	GCNNNNNNNGC	4 cut(s)	259, 324, 416, 999
HpyF3I	CTNAG	6 cut(s)	194, 425, 486, 858, 959, 1073
HpySE526I	ACGT	3 cut(s)	313, 320, 760
Hsp92II	CATG	6 cut(s)	235, 556, 745, 823, 853, 946
HspAI	GCGC	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	34, 43, 273, 673
LmnI	GCTCC	1 cut(s)	859
Lsp1109I	GCAGC	3 cut(s)	76, 443, 732
LweI	GCATC	2 cut(s)	351, 921
MaeI	CTAG	3 cut(s)	467, 671, 681
MaeII	ACGT	3 cut(s)	313, 320, 760
MaeIII	GTNAC	6 cut(s)	395, 481, 692, 845, 938, 973
MalI	GATC	4 cut(s)	36, 45, 275, 675
MboI	GATC	4 cut(s)	34, 43, 273, 673
MboII	GAAGA	4 cut(s)	115, 401, 504, 581
MflI	RGATCY	1 cut(s)	673
MhlI	GDGCHC	1 cut(s)	604
MluCI	AATT	7 cut(s)	371, 414, 525, 546, 1011, 1059, 1084
MlyI	GAGTC	1 cut(s)	229
MnlI	CCTC	8 cut(s)	110, 188, 203, 214, 229, 385, 677, 853
MroXI	GAANNNNTTC	1 cut(s)	588
MseI	TTAA	3 cut(s)	648, 689, 1055
MslI	CAYNNNNRTG	2 cut(s)	477, 723
MspA1I	CMGCKG	2 cut(s)	67, 983
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	594, 995
MvaI	CCWGG	2 cut(s)	594, 995
MwoI	GCNNNNNNNGC	4 cut(s)	259, 324, 416, 999
NdeII	GATC	4 cut(s)	34, 43, 273, 673
NlaIII	CATG	6 cut(s)	235, 556, 745, 823, 853, 946
NlaIV	GGNNCC	2 cut(s)	328, 855
NmuCI	GTSAC	3 cut(s)	395, 938, 973
NspI	RCATGY	3 cut(s)	556, 745, 946
PaeI	GCATGC	1 cut(s)	556
PdmI	GAANNNNTTC	1 cut(s)	588
PkrI	GCNGC	5 cut(s)	66, 211, 214, 433, 747
PleI	GAGTC	1 cut(s)	229
PmaCI	CACGTG	1 cut(s)	314
PmlI	CACGTG	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	229
Ppu21I	YACGTR	2 cut(s)	314, 761
PsiI	TTATAA	1 cut(s)	620
Psp6I	CCWGG	2 cut(s)	592, 993
PspCI	CACGTG	1 cut(s)	314
PspGI	CCWGG	2 cut(s)	592, 993
PspN4I	GGNNCC	2 cut(s)	328, 855
PspPI	GGNCC	2 cut(s)	30, 658
PsuI	RGATCY	1 cut(s)	673
PvuII	CAGCTG	2 cut(s)	67, 983
RsaI	GTAC	2 cut(s)	763, 902
RsaNI	GTAC	2 cut(s)	762, 901
RseI	CAYNNNNRTG	2 cut(s)	477, 723
SaqAI	TTAA	3 cut(s)	648, 689, 1055
SatI	GCNGC	5 cut(s)	65, 210, 213, 432, 746
Sau3AI	GATC	4 cut(s)	34, 43, 273, 673
Sau96I	GGNCC	2 cut(s)	30, 658
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	2 cut(s)	594, 995
SduI	GDGCHC	1 cut(s)	604
SfaNI	GCATC	2 cut(s)	351, 921
SinI	GGWCC	1 cut(s)	658
SmiMI	CAYNNNNRTG	2 cut(s)	477, 723
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	7 cut(s)	371, 414, 525, 546, 1011, 1059, 1084
SsiI	CCGC	3 cut(s)	207, 210, 213
SspMI	CTAG	3 cut(s)	467, 671, 681
StyD4I	CCNGG	2 cut(s)	592, 993
TaaI	ACNGT	6 cut(s)	185, 304, 331, 338, 766, 905
TaiI	ACGT	3 cut(s)	316, 323, 763
TaqI	TCGA	2 cut(s)	276, 378
TasI	AATT	7 cut(s)	371, 414, 525, 546, 1011, 1059, 1084
TatI	WGTACW	1 cut(s)	900
TauI	GCSGC	2 cut(s)	212, 215
Tru1I	TTAA	3 cut(s)	648, 689, 1055
Tru9I	TTAA	3 cut(s)	648, 689, 1055
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	3 cut(s)	395, 938, 973
TseI	GCWGC	3 cut(s)	64, 431, 745
Tsp45I	GTSAC	3 cut(s)	395, 938, 973
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	658
XapI	RAATTY	3 cut(s)	525, 1059, 1084
XceI	RCATGY	3 cut(s)	556, 745, 946
XmnI	GAANNNNTTC	1 cut(s)	588
XspI	CTAG	3 cut(s)	467, 671, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.