Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

42839843 .. 42882804

Gene Structure 42962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG339900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGACTTCCATCTCTTCCGGAGGTCCTGTAAAACTCATTATCGAGATATCTTCAGCTTTGACATCAAACAAGGAGGCACAGCTTGTGGAGATTTTAGAGGATTGTCCAAGCATCCTTTCGCATTACAGCCACAACTATCAACCTGATGAAATACTAAACATGCAATGTTATTTTTTATATCAATTGCAGCAAGAAAAGCGTAAAATTGTGAGGAGGAAAAAGAAGGATACACATGATGATATTTTTGATCATGATGATTTGGACAACCTGCCACCCAATTTGCCTCCACTGCTTAAGACATTGAGCACATGGGCTAATGATTACTTGAAGGATGGGGTTACTATCCACATAACCTTAGGCGAGGAATTATTCGGATATCCAAAAAAGGTTGCCATCTTCAGAAGGGATGTACCAAAATCAACTGTGGGAACTCCAGCGTATATTGCACCTGAGGTTCTTTCTCGAAGAGAGTATGACGGCAAGATGGCAGATGTATGGTCTTGTGGGGTGACCTTATATGTTATGCTGGTGGGAGCATATCCATTTGAGGACCAAGAAGATCCAAAGAATTTCAGAAAAACCATTAATCGAATAATGGCTGTTCAGTACAAGATCCCAGACTATGTTCACATATCTCAAGATTGTAGGCATCTCCTCTCGCGCATCTTTGTTGCAAATCCAGCAAGGAGGATCAGCATTAAAGAAATCAAGAACCACCCATGGTTTTTGAAGAACTTGCCGAGAGAGCTCACAGAAGCAGCTCAAACCATGTACTACAGAAAAGAAAACCCAACCTTTTCCCTCCAAAGTGTTGAAGACATCATGAAGATAGTGGAAGAAGCCAAAAATCCTCCCCCAGTTTCCCGATCGGTTGGAGGCTTTGGCTGGGGAGGAGAAGAAGACGATGGTGATGCAAAGGATGATGTAGAGGGCGAGGAGGAAGAAGACGAGTATGAAAAGAGAGTGAAAGAAGCACATCAAAGTGGGGAAGTACGTGTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042742 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070300 GO:0071704 GO:0090696 GO:0098542 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

334

Amino Acids

38.35

Weight (kDa)

5.34

Isoelectric Point (pI)

58.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	138 - 242	8.4e-25	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	145 - 238	8.4e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	276
AccII	CGCG	1 cut(s)	661
AccIII	TCCGGA	1 cut(s)	17
AclWI	GGATC	3 cut(s)	554, 607, 698
AcsI	RAATTY	1 cut(s)	568
AcuI	CTGAAG	2 cut(s)	36, 382
AfaI	GTAC	4 cut(s)	411, 608, 773, 993
AflII	CTTAAG	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	994
AgsI	TTSAA	3 cut(s)	328, 730, 815
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
AluBI	AGCT	4 cut(s)	56, 82, 748, 761
AluI	AGCT	4 cut(s)	56, 82, 748, 761
Alw21I	GWGCWC	2 cut(s)	308, 750
AlwI	GGATC	3 cut(s)	554, 607, 698
Aor13HI	TCCGGA	1 cut(s)	17
ApeKI	GCWGC	2 cut(s)	187, 758
ApoI	RAATTY	1 cut(s)	568
AseI	ATTAAT	1 cut(s)	585
AspLEI	GCGC	1 cut(s)	663
AspS9I	GGNCC	2 cut(s)	23, 550
AsuHPI	GGTGA	2 cut(s)	520, 920
AvaII	GGWCC	2 cut(s)	23, 550
AxyI	CCTNAGG	2 cut(s)	355, 450
BanII	GRGCYC	1 cut(s)	750
BbsI	GAAGAC	3 cut(s)	822, 906, 951
Bbv12I	GWGCWC	2 cut(s)	308, 750
BbvI	GCAGC	2 cut(s)	199, 770
BccI	CCATC	5 cut(s)	17, 326, 401, 478, 899
BceAI	ACGGC	1 cut(s)	493
BcgI	CGANNNNNNTGC	2 cut(s)	893, 927
BciVI	GTATCC	1 cut(s)	220
BclI	TGATCA	1 cut(s)	247
BfmI	CTRYAG	1 cut(s)	775
BfrI	CTTAAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	276
BfuI	GTATCC	1 cut(s)	220
BisI	GCNGC	2 cut(s)	188, 759
BlsI	GCNGC	2 cut(s)	189, 760
Bme18I	GGWCC	2 cut(s)	23, 550
BmgT120I	GGNCC	2 cut(s)	23, 550
BmrI	ACTGGG	1 cut(s)	851
BmsI	GCATC	4 cut(s)	120, 658, 672, 901
BmuI	ACTGGG	1 cut(s)	851
BpiI	GAAGAC	3 cut(s)	822, 906, 951
BpmI	CTGGAG	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	621
BsaAI	YACGTR	1 cut(s)	995
BsaJI	CCNNGG	1 cut(s)	719
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bse1I	ACTGG	1 cut(s)	857
Bse21I	CCTNAGG	2 cut(s)	355, 450
Bse3DI	GCAATG	1 cut(s)	170
BseAI	TCCGGA	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	719
BseGI	GGATG	4 cut(s)	111, 337, 412, 925
BseMI	GCAATG	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	857
BseRI	GAGGAG	4 cut(s)	226, 644, 906, 950
BseXI	GCAGC	2 cut(s)	199, 770
BseYI	CCCAGC	1 cut(s)	885
Bsh1236I	CGCG	1 cut(s)	661
Bsh1285I	CGRYCG	1 cut(s)	869
BsiEI	CGRYCG	1 cut(s)	869
BsiHKAI	GWGCWC	2 cut(s)	308, 750
BsiSI	CCGG	1 cut(s)	18
Bsp1286I	GDGCHC	2 cut(s)	308, 750
Bsp13I	TCCGGA	1 cut(s)	17
Bsp143I	GATC	5 cut(s)	247, 559, 612, 690, 866
Bsp19I	CCATGG	1 cut(s)	719
BspCNI	CTCAG	1 cut(s)	442
BspEI	TCCGGA	1 cut(s)	17
BspFNI	CGCG	1 cut(s)	661
BspHI	TCATGA	2 cut(s)	250, 822
BspMI	ACCTGC	1 cut(s)	276
BspPI	GGATC	3 cut(s)	554, 607, 698
BspTI	CTTAAG	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	857
BssECI	CCNNGG	1 cut(s)	719
BssMI	GATC	5 cut(s)	247, 559, 612, 690, 866
BssT1I	CCWWGG	1 cut(s)	719
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	2 cut(s)	19, 460
BstAFI	CTTAAG	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	995
BstDEI	CTNAG	2 cut(s)	355, 450
BstDSI	CCRYGG	1 cut(s)	719
BstEII	GGTNACC	1 cut(s)	508
BstF5I	GGATG	4 cut(s)	111, 337, 412, 925
BstFNI	CGCG	1 cut(s)	661
BstHHI	GCGC	1 cut(s)	663
BstKTI	GATC	5 cut(s)	250, 562, 615, 693, 869
BstMBI	GATC	5 cut(s)	247, 559, 612, 690, 866
BstMCI	CGRYCG	1 cut(s)	869
BstMWI	GCNNNNNNNGC	5 cut(s)	196, 289, 443, 680, 745
BstNSI	RCATGY	1 cut(s)	163
BstPI	GGTNACC	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	775
BstUI	CGCG	1 cut(s)	661
BstV1I	GCAGC	2 cut(s)	199, 770
BstV2I	GAAGAC	3 cut(s)	822, 906, 951
BstX2I	RGATCY	2 cut(s)	559, 612
BstYI	RGATCY	2 cut(s)	559, 612
Bsu36I	CCTNAGG	2 cut(s)	355, 450
BsuI	GTATCC	1 cut(s)	220
BtgI	CCRYGG	1 cut(s)	719
BtsCI	GGATG	4 cut(s)	111, 337, 412, 925
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	1 cut(s)	287
BveI	ACCTGC	1 cut(s)	276
CciI	TCATGA	2 cut(s)	250, 822
CfoI	GCGC	1 cut(s)	663
Cfr13I	GGNCC	2 cut(s)	23, 550
Csp6I	GTAC	4 cut(s)	410, 607, 772, 992
CspCI	CAANNNNNGTGG	2 cut(s)	261, 296
CviAII	CATG	7 cut(s)	160, 233, 251, 309, 720, 769, 823
CviQI	GTAC	4 cut(s)	410, 607, 772, 992
DdeI	CTNAG	2 cut(s)	355, 450
DpnI	GATC	5 cut(s)	249, 561, 614, 692, 868
DpnII	GATC	5 cut(s)	247, 559, 612, 690, 866
Eam1104I	CTCTTC	2 cut(s)	19, 460
EarI	CTCTTC	2 cut(s)	19, 460
Ecl136II	GAGCTC	1 cut(s)	748
Eco130I	CCWWGG	1 cut(s)	719
Eco24I	GRGCYC	1 cut(s)	750
Eco32I	GATATC	2 cut(s)	48, 377
Eco47I	GGWCC	2 cut(s)	23, 550
Eco53kI	GAGCTC	1 cut(s)	748
Eco57I	CTGAAG	2 cut(s)	36, 382
Eco81I	CCTNAGG	2 cut(s)	355, 450
Eco91I	GGTNACC	1 cut(s)	508
EcoICRI	GAGCTC	1 cut(s)	748
EcoO109I	RGGNCCY	1 cut(s)	23
EcoO65I	GGTNACC	1 cut(s)	508
EcoRV	GATATC	2 cut(s)	48, 377
EcoT14I	CCWWGG	1 cut(s)	719
EcoT38I	GRGCYC	1 cut(s)	750
ErhI	CCWWGG	1 cut(s)	719
FaeI	CATG	7 cut(s)	163, 236, 254, 312, 723, 772, 826
FatI	CATG	7 cut(s)	159, 232, 250, 308, 719, 768, 822
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	2 cut(s)	188, 759
FokI	GGATG	4 cut(s)	98, 344, 419, 932
FriOI	GRGCYC	1 cut(s)	750
Fsp4HI	GCNGC	2 cut(s)	188, 759
GlaI	GCGC	1 cut(s)	662
GluI	GCNGC	2 cut(s)	188, 759
GsaI	CCCAGC	1 cut(s)	889
GsuI	CTGGAG	1 cut(s)	417
HapII	CCGG	1 cut(s)	18
HhaI	GCGC	1 cut(s)	663
Hin1II	CATG	7 cut(s)	163, 236, 254, 312, 723, 772, 826
Hin6I	GCGC	1 cut(s)	661
HinP1I	GCGC	1 cut(s)	661
HpaII	CCGG	1 cut(s)	18
HphI	GGTGA	2 cut(s)	520, 920
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	4 cut(s)	374, 401, 575, 1004
Hpy188III	TCNNGA	8 cut(s)	18, 43, 251, 462, 638, 709, 823, 864
Hpy8I	GTNNAC	1 cut(s)	628
HpyAV	CCTTC	3 cut(s)	217, 322, 396
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4IV	ACGT	1 cut(s)	994
HpyCH4V	TGCA	5 cut(s)	163, 187, 446, 674, 914
HpyF10VI	GCNNNNNNNGC	5 cut(s)	196, 289, 443, 680, 745
HpyF3I	CTNAG	2 cut(s)	355, 450
HpySE526I	ACGT	1 cut(s)	994
Hsp92II	CATG	7 cut(s)	163, 236, 254, 312, 723, 772, 826
HspAI	GCGC	1 cut(s)	661
Kpn2I	TCCGGA	1 cut(s)	17
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	5 cut(s)	247, 559, 612, 690, 866
LmnI	GCTCC	1 cut(s)	533
Lsp1109I	GCAGC	2 cut(s)	199, 770
LweI	GCATC	4 cut(s)	120, 658, 672, 901
MaeII	ACGT	1 cut(s)	994
MaeIII	GTNAC	2 cut(s)	337, 508
MalI	GATC	5 cut(s)	249, 561, 614, 692, 868
MboI	GATC	5 cut(s)	247, 559, 612, 690, 866
MfeI	CAATTG	1 cut(s)	182
MflI	RGATCY	2 cut(s)	559, 612
MhlI	GDGCHC	2 cut(s)	308, 750
MluCI	AATT	5 cut(s)	182, 204, 277, 365, 568
MmeI	TCCRAC	1 cut(s)	853
MroI	TCCGGA	1 cut(s)	17
MseI	TTAA	3 cut(s)	294, 585, 699
MslI	CAYNNNNRTG	1 cut(s)	981
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	1 cut(s)	18
MunI	CAATTG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	661
MwoI	GCNNNNNNNGC	5 cut(s)	196, 289, 443, 680, 745
NcoI	CCATGG	1 cut(s)	719
NdeII	GATC	5 cut(s)	247, 559, 612, 690, 866
NlaIII	CATG	7 cut(s)	163, 236, 254, 312, 723, 772, 826
NmeAIII	GCCGAG	1 cut(s)	765
NmuCI	GTSAC	1 cut(s)	508
NspI	RCATGY	1 cut(s)	163
PagI	TCATGA	2 cut(s)	250, 822
PkrI	GCNGC	2 cut(s)	189, 760
Ple19I	CGATCG	1 cut(s)	869
Ppu21I	YACGTR	1 cut(s)	995
PpuMI	RGGWCCY	1 cut(s)	23
PshBI	ATTAAT	1 cut(s)	585
Psp124BI	GAGCTC	1 cut(s)	750
Psp5II	RGGWCCY	1 cut(s)	23
PspEI	GGTNACC	1 cut(s)	508
PspFI	CCCAGC	1 cut(s)	885
PspPI	GGNCC	2 cut(s)	23, 550
PspPPI	RGGWCCY	1 cut(s)	23
PsuI	RGATCY	2 cut(s)	559, 612
PvuI	CGATCG	1 cut(s)	869
RsaI	GTAC	4 cut(s)	411, 608, 773, 993
RsaNI	GTAC	4 cut(s)	410, 607, 772, 992
RseI	CAYNNNNRTG	1 cut(s)	981
SacI	GAGCTC	1 cut(s)	750
SaqAI	TTAA	3 cut(s)	294, 585, 699
SatI	GCNGC	2 cut(s)	188, 759
Sau3AI	GATC	5 cut(s)	247, 559, 612, 690, 866
Sau96I	GGNCC	2 cut(s)	23, 550
SduI	GDGCHC	2 cut(s)	308, 750
SfaNI	GCATC	4 cut(s)	120, 658, 672, 901
SfcI	CTRYAG	1 cut(s)	775
SinI	GGWCC	2 cut(s)	23, 550
SmiMI	CAYNNNNRTG	1 cut(s)	981
SmlI	CTYRAG	2 cut(s)	293, 636
SmoI	CTYRAG	2 cut(s)	293, 636
Sse9I	AATT	5 cut(s)	182, 204, 277, 365, 568
SstI	GAGCTC	1 cut(s)	750
StyI	CCWWGG	1 cut(s)	719
TaaI	ACNGT	1 cut(s)	424
TaiI	ACGT	1 cut(s)	997
TaqI	TCGA	3 cut(s)	42, 463, 589
TasI	AATT	5 cut(s)	182, 204, 277, 365, 568
TatI	WGTACW	2 cut(s)	606, 771
Tru1I	TTAA	3 cut(s)	294, 585, 699
Tru9I	TTAA	3 cut(s)	294, 585, 699
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	2 cut(s)	187, 758
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	3 cut(s)	162, 839, 969
TspRI	CASTG	1 cut(s)	294
Vha464I	CTTAAG	1 cut(s)	293
VpaK11BI	GGWCC	2 cut(s)	23, 550
VspI	ATTAAT	1 cut(s)	585
XapI	RAATTY	1 cut(s)	568
XceI	RCATGY	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.