Rh7AG393500

Bulb-type mannose-specific lectin

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
N/A
Physical Location & Seq
Reverse (-)
51546203 .. 51546547
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG393500.1

Sequence Viewer

Length: 345 bp
ATGGACTATTTTGCAAATCAGTTCATTGAACCTGTGAAACTTGGTGCAAGTTTATCACTATGTCAATCTCCATGCTCTCAAAATTGCACTTGCTTGGCCTTTTTCCATGGAAAATCTTCTGGTTCTTGTTATCTAGTTGAAAACAATTTGGGTTTCATCATATACAGCTCTAGTAGCCAGGAAGATCAAATAGGGTACATAAAGGTGGTAGGGCCTTGGTCAGGGCAGAAGAACAGTATTCCAGTGTTAGATTTGGTAATGATAATTTCTATGCTGTTAATCATCATAGTGGTCATGAGACTCATATGGTGGAGAAAGAAAAAGCGTACTAGAGAGCAAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

12.91

Weight (kDa)

8.9

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 197, 328
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 2 cut(s) 29, 140
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 292
AoxI GGCC 2 cut(s) 96, 212
Asp700I GAANNNNTTC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 3 cut(s) 134, 171, 330
Bme1390I CCNGG 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 106, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 2 cut(s) 106, 215
BseLI CCNNNNNNNGG 1 cut(s) 221
BseNI ACTGG 1 cut(s) 242
BshFI GGCC 2 cut(s) 98, 214
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 292
BsnI GGCC 2 cut(s) 98, 214
Bsp143I GATC 1 cut(s) 184
Bsp19I CCATGG 1 cut(s) 106
BspANI GGCC 2 cut(s) 98, 214
BspHI TCATGA 1 cut(s) 294
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 106, 215
BssMI GATC 1 cut(s) 184
BssT1I CCWWGG 2 cut(s) 106, 215
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 236
BstDSI CCRYGG 1 cut(s) 106
BstENI CCTNNNNNAGG 1 cut(s) 219
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BsuRI GGCC 2 cut(s) 98, 214
BtgI CCRYGG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 249
CciI TCATGA 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 196, 327
CviAII CATG 3 cut(s) 72, 107, 295
CviJI RGCY 4 cut(s) 98, 168, 177, 214
CviKI_1 RGCY 4 cut(s) 98, 168, 177, 214
CviQI GTAC 2 cut(s) 196, 327
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
Eco130I CCWWGG 2 cut(s) 106, 215
EcoNI CCTNNNNNAGG 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 2 cut(s) 106, 215
ErhI CCWWGG 2 cut(s) 106, 215
FaeI CATG 3 cut(s) 75, 110, 298
FatI CATG 3 cut(s) 71, 106, 294
FauNDI CATATG 1 cut(s) 305
FspBI CTAG 3 cut(s) 134, 171, 330
HaeIII GGCC 2 cut(s) 98, 214
Hin1II CATG 3 cut(s) 75, 110, 298
HinfI GANTC 1 cut(s) 300
Hpy188III TCNNGA 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 3 cut(s) 14, 47, 87
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
Hsp92II CATG 3 cut(s) 75, 110, 298
Kzo9I GATC 1 cut(s) 184
LpnPI CCDG 6 cut(s) 45, 105, 164, 191, 207, 255
MaeI CTAG 3 cut(s) 134, 171, 330
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 3 cut(s) 108, 194, 241
MluCI AATT 3 cut(s) 82, 145, 264
MlyI GAGTC 1 cut(s) 294
MroXI GAANNNNTTC 1 cut(s) 115
MseI TTAA 1 cut(s) 278
MslI CAYNNNNRTG 2 cut(s) 203, 287
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 174
NcoI CCATGG 1 cut(s) 106
NdeI CATATG 1 cut(s) 305
NdeII GATC 1 cut(s) 184
NlaIII CATG 3 cut(s) 75, 110, 298
PagI TCATGA 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 115
PleI GAGTC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspPI GGNCC 1 cut(s) 212
RsaI GTAC 2 cut(s) 197, 328
RsaNI GTAC 2 cut(s) 196, 327
RseI CAYNNNNRTG 2 cut(s) 203, 287
SaqAI TTAA 1 cut(s) 278
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 179
SetI ASST 3 cut(s) 34, 170, 207
SmiMI CAYNNNNRTG 2 cut(s) 203, 287
Sse9I AATT 3 cut(s) 82, 145, 264
SspMI CTAG 3 cut(s) 134, 171, 330
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 2 cut(s) 106, 215
TaaI ACNGT 1 cut(s) 236
TasI AATT 3 cut(s) 82, 145, 264
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 1 cut(s) 249
TspDTI ATGAA 2 cut(s) 13, 145
TspRI CASTG 1 cut(s) 249
XagI CCTNNNNNAGG 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 115
XspI CTAG 3 cut(s) 134, 171, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.