Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2867873 .. 2868184

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG045100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGTTCTTCTGGTTTACCACCATTGTTGGACTCGGCGCCTTACAATGATGCCAAGACCAGACCGGCTTCAGAGTCGAATTACGTGCCCTGCTTCTCCAACCATGAATCCATTGATTCTCAAAGAAACCAAGGGATTGTTGATTACATCAACGGGCAATCCTCTTTTCTCCGTTTCTTCAAATCCTTCAAACAACAACGCTTTCCCATGAGTCACGTATCAGAATTCACTCTATTCTGCTCCTGTTTCATCAGGAAATTTCTAGTTTCCGAGTTCGGTTTTAATGCAAGACCATCTGAGGGCCTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

103

Amino Acids

11.61

Weight (kDa)

7.74

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AcsI	RAATTY	2 cut(s)	224, 257
AcuI	CTGAAG	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	2 cut(s)	181, 190
AoxI	GGCC	1 cut(s)	301
ApoI	RAATTY	2 cut(s)	224, 257
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	1 cut(s)	301
BaeGI	GKGCMC	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	37
BccI	CCATC	1 cut(s)	301
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BfaI	CTAG	1 cut(s)	263
BfoI	RGCGCY	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	39
BmsI	GCATC	1 cut(s)	40
BsaAI	YACGTR	2 cut(s)	85, 217
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse118I	RCCGGY	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	288
BseSI	GKGCMC	1 cut(s)	90
BshFI	GGCC	1 cut(s)	303
BshNI	GGYRCC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	299
BsnI	GGCC	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	90
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	37
BsrFI	RCCGGY	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	130
BstACI	GRCGYC	1 cut(s)	38
BstBAI	YACGTR	2 cut(s)	85, 217
BstDEI	CTNAG	1 cut(s)	297
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstSLI	GKGCMC	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	303
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	301
CspCI	CAANNNNNGTGG	2 cut(s)	9, 44
CviAII	CATG	2 cut(s)	104, 208
CviJI	RGCY	2 cut(s)	68, 303
CviKI_1	RGCY	2 cut(s)	68, 303
DdeI	CTNAG	1 cut(s)	297
DinI	GGCGCC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	130
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	2 cut(s)	107, 211
FaiI	YATR	2 cut(s)	105, 209
FatI	CATG	2 cut(s)	103, 207
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	1 cut(s)	65
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	107, 211
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	5 cut(s)	32, 74, 107, 116, 211
HpaII	CCGG	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	4 cut(s)	73, 223, 271, 298
Hpy188III	TCNNGA	1 cut(s)	253
Hpy8I	GTNNAC	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	196
HpyCH4IV	ACGT	2 cut(s)	84, 216
HpyCH4V	TGCA	1 cut(s)	287
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	2 cut(s)	84, 216
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	107, 211
HspAI	GCGC	1 cut(s)	38
KasI	GGCGCC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	5 cut(s)	73, 78, 103, 238, 256
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	2 cut(s)	84, 216
MaeIII	GTNAC	1 cut(s)	212
MboII	GAAGA	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	3 cut(s)	79, 224, 257
Mly113I	GGCGCC	1 cut(s)	38
MlyI	GAGTC	3 cut(s)	26, 83, 220
MmeI	TCCRAC	2 cut(s)	9, 123
MnlI	CCTC	2 cut(s)	172, 292
MseI	TTAA	1 cut(s)	282
MspI	CCGG	1 cut(s)	65
NarI	GGCGCC	1 cut(s)	38
NlaIII	CATG	2 cut(s)	107, 211
NlaIV	GGNNCC	1 cut(s)	39
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	1 cut(s)	212
PfeI	GAWTC	2 cut(s)	107, 116
PleI	GAGTC	3 cut(s)	26, 82, 219
PluTI	GGCGCC	1 cut(s)	41
PpsI	GAGTC	3 cut(s)	26, 82, 219
Ppu21I	YACGTR	2 cut(s)	85, 217
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	301
SaqAI	TTAA	1 cut(s)	282
Sau96I	GGNCC	1 cut(s)	301
SchI	GAGTC	3 cut(s)	26, 83, 220
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	2 cut(s)	87, 219
SfaNI	GCATC	1 cut(s)	40
SfoI	GGCGCC	1 cut(s)	39
Sse9I	AATT	3 cut(s)	79, 224, 257
SspDI	GGCGCC	1 cut(s)	37
SspMI	CTAG	1 cut(s)	263
StyI	CCWWGG	1 cut(s)	130
TaiI	ACGT	2 cut(s)	87, 219
TaqI	TCGA	1 cut(s)	77
TasI	AATT	3 cut(s)	79, 224, 257
TfiI	GAWTC	2 cut(s)	107, 116
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	120, 238
TspGWI	ACGGA	1 cut(s)	161
XapI	RAATTY	2 cut(s)	224, 257
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.